# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_12 - 229 Methyltransf_32 PF13679.1 141 4.6e-06 18.2 0.1 1 1 2.5e-07 1.2e-05 16.9 0.1 11 80 54 118 47 154 0.74 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 Methyltransf_12 PF08242.7 99 3.7e-12 38.5 0.1 1 1 1.3e-13 6.1e-12 37.8 0.1 1 99 72 179 72 179 0.88 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 UPF0020 PF01170.13 180 5.3e-07 21.1 0.2 1 1 2.2e-08 1e-06 20.3 0.1 15 112 54 149 45 151 0.84 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 RrnaAD PF00398.15 262 2.1e-05 15.4 0.0 1 1 1e-06 4.7e-05 14.3 0.0 17 54 54 91 43 99 0.88 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 Pox_MCEL PF03291.11 332 1.8e-05 15.5 1.1 1 1 1.1e-06 5.3e-05 14.0 1.1 51 97 56 103 43 206 0.61 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_10 - 277 MipZ PF09140.6 261 1.1e-14 45.9 0.0 1 1 4.4e-14 2e-12 38.5 0.0 3 131 11 161 9 175 0.65 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_10 - 277 YhjQ PF06564.7 244 3.8e-12 37.8 0.0 1 1 1.1e-13 5.2e-12 37.4 0.0 1 150 8 161 8 251 0.80 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_12 - 229 Methyltransf_18 PF12847.2 112 1.6e-11 36.6 0.1 1 1 5.1e-13 2.4e-11 36.1 0.1 1 109 67 181 67 184 0.79 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 MetW PF07021.7 193 2.5e-05 15.5 0.1 1 1 1.3e-06 6.1e-05 14.2 0.1 11 102 65 173 55 219 0.64 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 4_2 - 1102 AAA_22 PF13401.1 131 0.00032 12.7 0.3 1 1 6.6e-05 0.003 9.5 0.1 7 100 333 447 331 469 0.71 # 550 # 3855 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 2_10 - 277 ATP_bind_1 PF03029.12 238 7.7e-07 20.6 0.0 1 1 3.5e-08 1.6e-06 19.6 0.0 6 99 19 137 17 143 0.78 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_12 - 229 Methyltransf_11 PF08241.7 95 5.3e-20 63.6 0.0 1 1 1.8e-21 8.1e-20 63.0 0.0 1 95 72 181 72 181 0.85 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_10 - 277 SRP54 PF00448.17 196 1.9e-05 16.0 0.5 1 1 1.2e-06 5.5e-05 14.5 0.3 10 40 18 48 8 54 0.85 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 1_15 - 584 AAA_21 PF13304.1 303 6.1e-08 24.7 0.0 1 1 1.8e-06 4.2e-05 15.4 0.0 2 272 370 511 369 533 0.75 # 9324 # 11075 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 2_5 - 227 AAA_21 PF13304.1 303 7.8e-05 14.5 0.2 1 1 5.4e-06 0.00012 13.8 0.0 3 81 9 87 7 120 0.85 # 3380 # 4060 # -1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 4_2 - 1102 Helicase_C PF00271.26 78 4e-20 63.4 0.0 1 2 0.00054 0.025 6.4 0.0 10 37 387 414 378 425 0.88 # 550 # 3855 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 4_2 - 1102 Helicase_C PF00271.26 78 4e-20 63.4 0.0 2 2 7.6e-19 3.5e-17 53.9 0.0 8 76 588 656 582 657 0.96 # 550 # 3855 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 2_10 - 277 ArsA_ATPase PF02374.10 305 8.9e-13 39.7 0.1 1 1 4.4e-14 2e-12 38.5 0.1 5 137 13 139 8 144 0.80 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 3_3 - 381 AdoHcyase_NAD PF00670.16 162 4.9e-05 15.0 0.9 1 1 3.7e-06 0.00017 13.3 0.9 22 121 182 294 161 306 0.76 # 1205 # 2347 # -1 # ID=3_3;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 2_12 - 229 CMAS PF02353.15 273 2.3e-08 25.2 0.1 1 1 6.4e-10 2.9e-08 24.8 0.1 51 172 56 189 50 209 0.76 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 3_3 - 381 Shikimate_DH PF01488.15 135 2.5e-05 16.2 2.9 1 3 0.013 0.6 2.0 0.0 105 131 131 159 102 161 0.81 # 1205 # 2347 # -1 # ID=3_3;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 3_3 - 381 Shikimate_DH PF01488.15 135 2.5e-05 16.2 2.9 2 3 0.00058 0.027 6.4 0.6 3 42 174 213 172 216 0.89 # 1205 # 2347 # -1 # ID=3_3;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 3_3 - 381 Shikimate_DH PF01488.15 135 2.5e-05 16.2 2.9 3 3 0.00072 0.033 6.1 0.0 67 125 244 300 226 305 0.81 # 1205 # 2347 # -1 # ID=3_3;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 2_5 - 227 Zeta_toxin PF06414.7 201 5e-17 53.4 0.3 1 1 9.1e-18 4.2e-16 50.4 0.3 15 192 4 164 2 174 0.85 # 3380 # 4060 # -1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 2_12 - 229 CheR PF01739.13 196 0.00069 10.7 1.5 1 2 0.0043 0.2 2.7 0.0 19 44 55 80 46 104 0.71 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 CheR PF01739.13 196 0.00069 10.7 1.5 2 2 0.00021 0.0094 7.0 0.4 112 173 119 181 104 184 0.83 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 1_15 - 584 SMC_N PF02463.14 220 8e-08 23.5 0.0 1 1 8.8e-09 4.1e-07 21.2 0.0 135 212 365 550 314 555 0.71 # 9324 # 11075 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 2_10 - 277 VirC1 PF07015.6 231 3e-06 18.2 0.0 1 1 1e-07 4.7e-06 17.6 0.0 1 50 8 57 8 71 0.92 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 3_3 - 381 Malic_M PF03949.10 255 4.1e-58 188.6 3.5 1 1 1.2e-59 5.7e-58 188.2 3.5 1 251 159 376 159 379 0.96 # 1205 # 2347 # -1 # ID=3_3;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 2_10 - 277 Fer4_NifH PF00142.13 273 4e-06 18.0 0.3 1 2 2.7e-05 0.0012 9.8 0.1 8 44 17 53 9 136 0.85 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_10 - 277 Fer4_NifH PF00142.13 273 4e-06 18.0 0.3 2 2 0.00026 0.012 6.5 0.0 187 236 203 254 190 272 0.76 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_5 - 227 AAA_23 PF13476.1 202 0.0001 14.5 4.0 1 1 4.3e-06 0.0002 13.5 4.0 21 132 7 187 3 222 0.59 # 3380 # 4060 # -1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 2_10 - 277 AAA_18 PF13238.1 129 0.00016 13.9 0.1 1 1 4.1e-05 0.0019 10.3 0.0 8 87 19 100 18 150 0.69 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_10 - 277 CbiA PF01656.18 195 1.6e-26 84.7 0.0 1 1 5.1e-28 2.3e-26 84.2 0.0 1 171 11 214 11 245 0.74 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_12 - 229 Methyltransf_25 PF13649.1 101 6e-11 34.5 0.0 1 1 2.6e-12 1.2e-10 33.6 0.0 1 101 71 177 71 177 0.76 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_10 - 277 AAA_14 PF13173.1 128 2.6e-05 16.0 1.8 1 1 1.3e-06 5.9e-05 14.8 0.5 12 44 19 52 13 135 0.81 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_5 - 227 AAA_29 PF13555.1 62 1.2e-05 16.7 0.0 1 1 1.1e-06 2.5e-05 15.6 0.0 26 47 8 29 2 38 0.80 # 3380 # 4060 # -1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 1_15 - 584 AAA_29 PF13555.1 62 6.3e-05 14.3 0.0 1 1 7.5e-06 0.00017 12.9 0.0 16 40 361 384 356 391 0.84 # 9324 # 11075 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 2_12 - 229 Ubie_methyltran PF01209.13 233 1.3e-13 42.4 0.3 1 1 3.7e-15 1.7e-13 42.0 0.3 30 156 51 186 44 205 0.77 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_3 - 350 RNA_pol_Rpb1_5 PF04998.12 277 0.0041 8.1 5.5 1 1 0.00014 0.0064 7.5 5.5 110 210 216 316 198 347 0.85 # 1573 # 2622 # -1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.370 2_12 - 229 Rsm22 PF09243.5 275 6.9e-08 23.6 0.1 1 1 1.8e-09 8.5e-08 23.3 0.1 8 144 45 187 40 206 0.81 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 N6_Mtase PF02384.11 311 5.9e-06 17.3 0.8 1 2 3.2e-07 1.5e-05 16.0 0.5 34 132 55 150 52 164 0.82 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 N6_Mtase PF02384.11 311 5.9e-06 17.3 0.8 2 2 0.063 2.9 -1.4 0.0 232 275 171 213 152 225 0.71 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_5 - 227 DUF258 PF03193.11 161 0.00041 11.4 0.3 1 1 9.9e-05 0.0046 8.0 0.3 36 55 6 25 1 144 0.71 # 3380 # 4060 # -1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 2_10 - 277 AAA_31 PF13614.1 157 2.3e-15 48.7 0.0 1 1 3.2e-16 1.5e-14 46.0 0.0 2 151 10 161 9 166 0.77 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 2_5 - 227 AAA_33 PF13671.1 143 1.3e-11 36.4 0.0 1 1 4e-13 1.8e-11 35.9 0.0 2 137 8 139 7 146 0.80 # 3380 # 4060 # -1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 2_12 - 229 Methyltransf_20 PF12147.3 311 0.00015 12.5 0.3 1 1 6.7e-06 0.00031 11.4 0.2 126 199 58 136 50 183 0.60 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 Methyltransf_26 PF13659.1 117 2.7e-10 32.1 0.0 1 1 8.5e-12 3.9e-10 31.6 0.0 2 112 69 180 68 184 0.89 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 3_3 - 381 2-Hacid_dh_C PF02826.14 178 0.00016 12.6 0.5 1 1 8.1e-06 0.00037 11.5 0.0 26 70 173 218 153 255 0.82 # 1205 # 2347 # -1 # ID=3_3;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 2_12 - 229 TehB PF03848.9 192 8e-10 30.0 0.3 1 1 2.6e-11 1.2e-09 29.4 0.3 18 109 55 158 42 191 0.73 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 MTS PF05175.9 170 1.8e-08 25.8 0.2 1 1 5.3e-10 2.4e-08 25.3 0.2 25 151 61 196 54 210 0.74 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 3_3 - 381 ELFV_dehydrog PF00208.16 244 1.6e-06 19.6 1.1 1 1 5.9e-08 2.7e-06 18.9 1.1 4 69 156 220 154 268 0.86 # 1205 # 2347 # -1 # ID=3_3;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_15 - 584 ABC_tran PF00005.22 137 2.1e-33 107.3 0.0 1 1 1.6e-34 3.8e-33 106.5 0.0 1 137 357 507 357 507 0.88 # 9324 # 11075 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 2_5 - 227 ABC_tran PF00005.22 137 1.7e-05 17.0 1.2 1 1 1.7e-06 4e-05 15.8 1.2 12 80 6 118 2 221 0.72 # 3380 # 4060 # -1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.366 2_12 - 229 Methyltransf_9 PF08003.6 315 1.9e-06 18.6 0.0 1 1 5.6e-08 2.6e-06 18.1 0.0 113 218 65 182 53 204 0.72 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 NodS PF05401.6 201 5e-08 24.3 0.0 1 1 1.6e-09 7.2e-08 23.8 0.0 42 144 66 181 46 190 0.76 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 1_15 - 584 SbcCD_C PF13558.1 90 0.00029 12.6 2.2 1 1 1e-05 0.00047 11.9 0.4 49 88 488 521 445 523 0.74 # 9324 # 11075 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 3_3 - 381 ThiF PF00899.16 136 1.7e-07 23.0 1.6 1 1 4.9e-09 2.3e-07 22.6 0.4 3 38 184 219 182 262 0.92 # 1205 # 2347 # -1 # ID=3_3;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 2_12 - 229 Methyltransf_31 PF13847.1 152 9.3e-18 56.1 0.2 1 1 3.6e-19 1.7e-17 55.3 0.2 2 112 66 185 65 215 0.86 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 FtsJ PF01728.14 181 4.3e-05 15.3 0.2 1 1 1.8e-06 8.1e-05 14.5 0.1 19 97 63 149 48 198 0.65 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 DOT1 PF08123.8 205 9.5e-05 13.5 0.1 1 1 2.8e-06 0.00013 13.1 0.1 28 80 53 106 50 182 0.70 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 4_2 - 1102 DEAD PF00270.24 169 9.8e-20 62.5 0.0 1 2 1.7e-18 7.7e-17 53.1 0.0 15 162 331 490 306 493 0.70 # 550 # 3855 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 4_2 - 1102 DEAD PF00270.24 169 9.8e-20 62.5 0.0 2 2 0.00051 0.024 5.9 0.0 45 103 543 621 515 631 0.82 # 550 # 3855 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.375 2_12 - 229 TIGR00755 TIGR00755 256 9.9e-05 13.2 0.1 1 1 3.3e-06 0.00015 12.6 0.1 15 61 53 100 46 175 0.65 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_12 - 229 Methyltransf_23 PF13489.1 161 1.3e-13 42.8 0.0 1 1 6e-15 2.8e-13 41.7 0.0 17 131 64 200 52 212 0.71 # 8492 # 9178 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.342 2_10 - 277 AAA_24 PF13479.1 213 1.2e-06 20.1 0.0 1 1 5.8e-08 2.7e-06 18.9 0.0 11 75 17 135 12 136 0.92 # 6957 # 7787 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.367 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c5d64c9d-9514-466a-b6a4-b80cae11bfbb # Target file: checkm_output/bins/pGCA_001702135.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001702135.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c5d64c9d-9514-466a-b6a4-b80cae11bfbb checkm_output/bins/pGCA_001702135.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:10 2020 # [ok]