# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 245 Methyltransf_12 PF08242.7 99 3.5e-09 28.9 0.0 1 1 1.6e-10 6.9e-09 27.9 0.0 1 98 86 178 86 179 0.83 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 1_22 - 400 MipZ PF09140.6 261 2e-10 31.9 0.6 1 2 4.5e-08 2e-06 18.8 0.0 2 53 108 161 107 197 0.80 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 400 MipZ PF09140.6 261 2e-10 31.9 0.6 2 2 1.1e-05 0.00049 10.9 0.0 86 134 230 278 205 284 0.84 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 400 YhjQ PF06564.7 244 2e-05 15.7 0.5 1 2 6.1e-05 0.0027 8.8 0.1 1 49 106 157 106 279 0.84 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 400 YhjQ PF06564.7 244 2e-05 15.7 0.5 2 2 0.00079 0.035 5.1 0.1 171 191 377 397 363 399 0.87 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_9 - 245 Methyltransf_18 PF12847.2 112 4.2e-08 25.5 0.0 1 1 1.9e-09 8.3e-08 24.6 0.0 4 110 84 182 81 184 0.84 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 1_20 - 545 Usp PF00582.21 140 3.3e-13 41.8 0.1 1 1 1.3e-14 5.5e-13 41.1 0.1 2 140 402 538 401 538 0.86 # 19235 # 20869 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_9 - 245 MetW PF07021.7 193 5.8e-06 17.5 0.0 1 1 2.7e-07 1.2e-05 16.5 0.0 11 48 79 116 67 131 0.85 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 2_9 - 380 DUF1611 PF07755.6 301 8.5e-97 315.1 0.0 1 1 2.4e-98 1.1e-96 314.8 0.0 1 293 68 365 68 370 0.97 # 8985 # 10124 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_9 - 245 Methyltransf_11 PF08241.7 95 2e-13 42.5 0.0 1 1 9.1e-15 4e-13 41.5 0.0 1 95 86 181 86 181 0.96 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 2_9 - 380 MobB PF03205.9 140 7.5e-05 14.2 0.4 1 1 8e-06 0.00035 12.0 0.4 1 39 187 226 187 278 0.79 # 8985 # 10124 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_22 - 400 ArsA_ATPase PF02374.10 305 1.2e-06 19.4 0.1 1 1 8.1e-08 3.5e-06 17.9 0.1 7 136 113 252 106 255 0.67 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_9 - 380 AAA_26 PF13500.1 199 3.9e-05 15.0 0.3 1 2 6.4e-05 0.0028 9.0 0.1 2 32 188 218 187 240 0.86 # 8985 # 10124 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 2_9 - 380 AAA_26 PF13500.1 199 3.9e-05 15.0 0.3 2 2 0.0032 0.14 3.4 0.0 88 120 250 283 234 286 0.75 # 8985 # 10124 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_9 - 245 CMAS PF02353.15 273 5.5e-73 237.1 0.1 1 1 3e-74 6.7e-73 236.8 0.1 6 232 26 243 22 244 0.96 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 1_8 - 49 CMAS PF02353.15 273 2.6e-05 15.1 0.1 1 1 1.4e-06 3e-05 14.9 0.1 248 273 7 32 3 32 0.91 # 9252 # 9398 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_22 - 400 VirC1 PF07015.6 231 1.6e-06 19.0 1.8 1 3 0.061 2.7 -1.3 0.1 176 216 4 44 2 60 0.80 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 400 VirC1 PF07015.6 231 1.6e-06 19.0 1.8 2 3 7.9e-06 0.00035 11.4 0.0 1 46 106 154 106 166 0.86 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 400 VirC1 PF07015.6 231 1.6e-06 19.0 1.8 3 3 0.00044 0.019 5.7 0.1 82 133 241 292 225 325 0.84 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 400 CbiA PF01656.18 195 4.2e-25 80.0 0.0 1 1 3.1e-26 6.8e-25 79.3 0.0 1 164 109 318 109 348 0.72 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_9 - 380 CbiA PF01656.18 195 1.5e-06 19.5 0.8 1 1 8.4e-07 1.8e-05 15.9 0.7 1 110 189 280 189 290 0.71 # 8985 # 10124 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_9 - 245 Methyltransf_25 PF13649.1 101 3.5e-09 28.8 0.0 1 1 1.9e-10 8.5e-09 27.5 0.0 2 81 86 157 85 177 0.85 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 1_7 - 450 KaiC PF06745.8 227 6.4e-06 17.1 0.0 1 2 0.06 2.6 -1.2 0.1 91 124 130 163 103 176 0.76 # 7462 # 8811 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.489 1_7 - 450 KaiC PF06745.8 227 6.4e-06 17.1 0.0 2 2 9.6e-07 4.2e-05 14.4 0.0 1 67 188 253 188 271 0.88 # 7462 # 8811 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.489 1_22 - 400 AAA_31 PF13614.1 157 2.2e-08 25.9 0.9 1 2 4.2e-08 9.2e-07 20.7 0.0 8 134 114 259 107 276 0.83 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 400 AAA_31 PF13614.1 157 2.2e-08 25.9 0.9 2 2 0.025 0.56 1.9 0.2 32 90 309 365 295 396 0.60 # 21939 # 23138 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_7 - 450 AAA_31 PF13614.1 157 6.9e-05 14.6 0.0 1 1 7.5e-06 0.00017 13.3 0.0 5 53 209 256 207 296 0.70 # 7462 # 8811 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.489 1_7 - 450 DnaB_C PF03796.10 259 5.4e-102 331.8 0.1 1 1 2.1e-103 9.2e-102 331.0 0.1 1 258 187 445 187 446 0.99 # 7462 # 8811 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.489 1_9 - 245 Methyltransf_26 PF13659.1 117 5.2e-06 18.3 0.0 1 1 1.8e-07 7.9e-06 17.7 0.0 4 74 85 148 82 225 0.84 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 1_9 - 245 MTS PF05175.9 170 4.8e-05 14.5 0.0 1 1 1.9e-06 8.2e-05 13.8 0.0 22 55 72 105 68 163 0.67 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 1_6 - 169 V_cholerae_RfbT PF05575.6 286 3.1e-05 14.8 0.0 1 1 7.8e-07 3.4e-05 14.7 0.0 27 111 3 90 1 134 0.80 # 5254 # 5760 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_9 - 245 Methyltransf_31 PF13847.1 152 2.5e-07 22.2 0.0 1 1 1.2e-08 5.1e-07 21.1 0.0 2 111 80 184 79 220 0.85 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 1_9 - 245 DOT1 PF08123.8 205 0.00012 13.2 0.0 1 1 4.5e-06 0.0002 12.5 0.0 31 87 70 125 60 136 0.90 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 1_9 - 245 Methyltransf_23 PF13489.1 161 1.5e-14 45.8 0.0 1 1 5.1e-16 2.2e-14 45.2 0.0 6 158 66 223 62 226 0.73 # 9420 # 10154 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.454 1_7 - 450 AAA_25 PF13481.1 194 1.1e-17 55.8 0.1 1 1 4e-19 1.7e-17 55.1 0.1 14 190 187 367 174 371 0.85 # 7462 # 8811 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.489 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2a0f2e9b-16b2-423d-b358-7052067e0ae4 # Target file: checkm_output/bins/pGCA_001693615.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001693615.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2a0f2e9b-16b2-423d-b358-7052067e0ae4 checkm_output/bins/pGCA_001693615.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:05 2020 # [ok]