# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_300 - 148 RNA_pol_A_bac PF01000.21 112 0.0035 12.5 0.0 1 1 9.9e-06 0.0042 12.2 0.0 43 90 100 146 76 147 0.80 # 241739 # 242182 # -1 # ID=1_300;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_416 - 439 IstB_IS21 PF01695.12 178 0.00017 16.0 0.0 1 1 1.2e-06 0.0005 14.5 0.0 48 75 253 280 237 287 0.89 # 331455 # 332771 # 1 # ID=1_416;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_1 - 405 MipZ PF09140.6 261 0.00067 13.7 0.2 1 2 2.1e-05 0.0088 10.0 0.0 5 60 113 174 109 203 0.71 # 1 # 1215 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.444 1_1 - 405 MipZ PF09140.6 261 0.00067 13.7 0.2 2 2 0.011 4.8 1.1 0.0 90 143 234 291 211 302 0.75 # 1 # 1215 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.444 1_73 - 529 AIG1 PF04548.11 212 0.00019 15.6 0.1 1 1 1.1e-06 0.00049 14.2 0.0 3 22 249 268 248 299 0.89 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_198 - 388 GIDA PF01134.17 392 0.0016 12.3 0.2 1 1 5.5e-06 0.0023 11.7 0.2 167 251 244 331 230 347 0.74 # 166459 # 167622 # -1 # ID=1_198;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_393 - 182 SSB PF00436.20 104 7.3e-36 117.2 0.2 1 1 2.3e-38 9.8e-36 116.8 0.2 1 100 4 102 4 105 0.97 # 311946 # 312491 # 1 # ID=1_393;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 1_392 - 718 DUF87 PF01935.12 229 1.4e-05 20.0 0.0 1 1 1.3e-07 2.7e-05 19.0 0.0 24 63 197 236 183 367 0.91 # 309702 # 311855 # 1 # ID=1_392;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_73 - 529 DUF87 PF01935.12 229 0.00025 15.9 0.1 1 2 0.028 5.9 1.5 0.0 138 184 68 111 10 147 0.71 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_73 - 529 DUF87 PF01935.12 229 0.00025 15.9 0.1 2 2 1.7e-05 0.0036 12.0 0.0 25 48 248 271 238 280 0.85 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_416 - 439 NB-ARC PF00931.17 287 0.00042 14.1 0.0 1 1 1.6e-06 0.00069 13.4 0.0 16 56 249 290 240 299 0.83 # 331455 # 332771 # 1 # ID=1_416;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_84 - 946 AAA_22 PF13401.1 131 2e-05 19.7 0.3 1 2 0.00024 0.014 10.5 0.0 3 27 502 526 499 555 0.87 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_84 - 946 AAA_22 PF13401.1 131 2e-05 19.7 0.3 2 2 0.006 0.36 5.9 0.0 87 121 765 808 724 813 0.69 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_305 - 787 AAA_22 PF13401.1 131 6.3e-05 18.1 0.0 1 1 1.2e-05 0.00071 14.7 0.0 8 108 188 274 181 293 0.75 # 244227 # 246587 # 1 # ID=1_305;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.442 1_73 - 529 AAA_22 PF13401.1 131 7.6e-05 17.8 0.0 1 1 4.7e-06 0.00028 16.0 0.0 3 27 245 269 242 386 0.77 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_53 - 342 AAA_22 PF13401.1 131 0.00043 15.4 0.1 1 1 4.6e-05 0.0028 12.8 0.0 5 111 69 158 65 181 0.73 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_416 - 439 AAA_22 PF13401.1 131 0.00066 14.8 0.1 1 1 0.00018 0.011 10.9 0.0 6 108 254 371 250 387 0.60 # 331455 # 332771 # 1 # ID=1_416;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_392 - 718 AAA_22 PF13401.1 131 0.0033 12.5 0.0 1 1 0.0002 0.012 10.7 0.0 3 45 195 232 192 277 0.80 # 309702 # 311855 # 1 # ID=1_392;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_222 - 1213 AAA_22 PF13401.1 131 0.0087 11.2 9.8 1 2 0.017 1 4.5 0.2 6 23 28 45 26 53 0.88 # 183676 # 187314 # -1 # ID=1_222;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.434 1_222 - 1213 AAA_22 PF13401.1 131 0.0087 11.2 9.8 2 2 0.00041 0.025 9.7 0.0 83 121 1125 1164 1024 1172 0.81 # 183676 # 187314 # -1 # ID=1_222;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.434 1_173 - 73 tRNA_anti-like PF12869.2 144 0.00083 13.8 0.0 1 1 2.3e-06 0.00096 13.6 0.0 49 97 23 70 7 71 0.83 # 143637 # 143855 # 1 # ID=1_173;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.397 1_196 - 259 NAD_binding_7 PF13241.1 103 0.0025 13.0 0.0 1 1 1.3e-05 0.0054 12.0 0.0 8 85 15 134 12 146 0.67 # 164934 # 165710 # -1 # ID=1_196;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.441 1_166 - 230 AAA_17 PF13207.1 121 0.0038 13.0 0.1 1 1 1.8e-05 0.0075 12.1 0.1 3 32 6 34 4 184 0.75 # 138000 # 138689 # 1 # ID=1_166;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.457 1_222 - 1213 AAA_21 PF13304.1 303 3.9e-05 18.6 1.1 1 3 9.3e-08 3.9e-05 18.6 1.1 4 55 31 85 31 249 0.61 # 183676 # 187314 # -1 # ID=1_222;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.434 1_222 - 1213 AAA_21 PF13304.1 303 3.9e-05 18.6 1.1 2 3 0.069 29 -0.6 2.0 83 210 286 410 252 448 0.76 # 183676 # 187314 # -1 # ID=1_222;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.434 1_222 - 1213 AAA_21 PF13304.1 303 3.9e-05 18.6 1.1 3 3 0.046 19 -0.1 0.7 109 219 1015 1084 978 1142 0.54 # 183676 # 187314 # -1 # ID=1_222;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.434 1_73 - 529 MobB PF03205.9 140 0.00036 15.2 0.0 1 1 4.3e-06 0.0018 12.9 0.0 4 30 250 276 248 347 0.84 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_305 - 787 Helicase_C PF00271.26 78 3.8e-06 21.7 0.0 1 1 3.7e-08 7.8e-06 20.7 0.0 13 75 435 501 426 504 0.89 # 244227 # 246587 # 1 # ID=1_305;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.442 1_193 - 1629 Helicase_C PF00271.26 78 0.00039 15.2 0.0 1 1 7.1e-06 0.0015 13.3 0.0 3 78 1256 1333 1254 1333 0.85 # 158140 # 163026 # -1 # ID=1_193;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.436 1_416 - 439 PhoH PF02562.11 205 5.9e-41 134.9 0.0 1 1 1.8e-43 7.6e-41 134.5 0.0 2 202 233 436 232 438 0.92 # 331455 # 332771 # 1 # ID=1_416;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_53 - 342 MCM PF00493.18 331 9.9e-05 16.2 0.0 1 1 3.6e-07 0.00015 15.5 0.0 61 155 72 169 69 190 0.80 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_73 - 529 T2SE PF00437.15 272 1.9e-33 110.5 0.2 1 1 9.1e-36 3.8e-33 109.4 0.2 63 254 179 379 155 397 0.86 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_256 - 209 Ribosomal_S9 PF00380.14 121 0.0012 14.1 1.1 1 2 0.0033 1.4 4.2 0.1 56 101 119 163 65 167 0.79 # 209862 # 210488 # -1 # ID=1_256;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.437 1_256 - 209 Ribosomal_S9 PF00380.14 121 0.0012 14.1 1.1 2 2 0.00013 0.055 8.7 0.1 72 103 167 198 162 205 0.82 # 209862 # 210488 # -1 # ID=1_256;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.437 1_73 - 529 Zeta_toxin PF06414.7 201 0.002 12.2 0.1 1 1 1.3e-05 0.0056 10.7 0.0 15 45 245 276 235 283 0.79 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_222 - 1213 SMC_N PF02463.14 220 6.1e-05 17.3 0.2 1 1 1.4e-07 6.1e-05 17.3 0.2 24 53 26 55 6 60 0.84 # 183676 # 187314 # -1 # ID=1_222;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.434 1_53 - 342 Arch_ATPase PF01637.13 234 0.0014 13.3 0.0 1 1 5.2e-06 0.0022 12.6 0.0 14 53 62 100 54 167 0.84 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_73 - 529 AAA_16 PF13191.1 185 2.2e-05 19.5 0.0 1 1 8.2e-07 0.00012 17.1 0.0 22 51 244 273 234 336 0.84 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_416 - 439 AAA_16 PF13191.1 185 5.7e-05 18.1 0.0 1 1 3.4e-06 0.00048 15.1 0.0 15 52 243 283 234 333 0.79 # 331455 # 332771 # 1 # ID=1_416;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_53 - 342 AAA_16 PF13191.1 185 0.00013 16.9 0.0 1 1 2e-06 0.00028 15.8 0.0 8 84 52 117 51 162 0.77 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_73 - 529 AAA_23 PF13476.1 202 0.00024 16.4 2.2 1 2 0.011 4.7 2.4 0.1 141 192 68 106 13 125 0.56 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_73 - 529 AAA_23 PF13476.1 202 0.00024 16.4 2.2 2 2 4.6e-06 0.002 13.4 0.3 20 39 247 266 240 271 0.87 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_106 - 337 AAA_13 PF13166.1 712 0.0016 11.8 1.0 1 1 5.3e-06 0.0022 11.4 1.0 268 357 150 236 145 264 0.71 # 93875 # 94885 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.477 1_1 - 405 CbiA PF01656.18 195 8.5e-18 59.4 0.1 1 1 4.3e-20 1.8e-17 58.3 0.1 3 171 113 325 112 352 0.74 # 1 # 1215 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.444 1_313 - 345 KaiC PF06745.8 227 1.1e-06 22.8 0.0 1 1 8.4e-09 3.6e-06 21.2 0.0 1 77 39 112 39 157 0.85 # 252192 # 253226 # 1 # ID=1_313;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_305 - 787 AAA_14 PF13173.1 128 0.00026 15.8 0.0 1 2 2e-05 0.0083 11.0 0.0 6 97 188 290 184 320 0.67 # 244227 # 246587 # 1 # ID=1_305;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.442 1_305 - 787 AAA_14 PF13173.1 128 0.00026 15.8 0.0 2 2 0.0099 4.2 2.2 0.0 37 82 400 445 377 453 0.69 # 244227 # 246587 # 1 # ID=1_305;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.442 1_73 - 529 AAA_29 PF13555.1 62 6.8e-05 17.3 0.0 1 1 3.6e-07 0.00015 16.2 0.0 21 51 245 274 233 279 0.80 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_53 - 342 AAA PF00004.24 132 8.1e-07 24.3 0.1 1 1 7.5e-09 3.2e-06 22.3 0.0 2 125 72 201 71 205 0.60 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_53 - 342 Bac_DnaA PF00308.13 219 0.00024 15.7 0.0 1 1 1e-06 0.00042 14.9 0.0 34 113 68 151 54 162 0.77 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_34 - 798 PAPS_reduct PF01507.14 174 1.2e-07 26.6 0.0 1 1 3.4e-09 1.4e-06 23.1 0.0 6 150 153 339 149 347 0.72 # 27008 # 29401 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_392 - 718 TraG-D_C PF12696.2 128 2.8e-14 48.0 0.0 1 1 1.2e-16 5e-14 47.2 0.0 1 128 525 666 525 666 0.90 # 309702 # 311855 # 1 # ID=1_392;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_1 - 405 AAA_31 PF13614.1 157 3.8e-07 25.1 1.0 1 3 0.036 15 0.4 0.1 53 105 38 87 15 96 0.73 # 1 # 1215 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.444 1_1 - 405 AAA_31 PF13614.1 157 3.8e-07 25.1 1.0 2 3 7.9e-05 0.033 9.0 0.0 9 91 117 204 110 223 0.75 # 1 # 1215 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.444 1_1 - 405 AAA_31 PF13614.1 157 3.8e-07 25.1 1.0 3 3 7.9e-06 0.0034 12.3 0.0 110 151 235 275 229 279 0.88 # 1 # 1215 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.444 1_166 - 230 AAA_33 PF13671.1 143 6.3e-06 21.1 0.4 1 3 5.8e-05 0.025 9.4 0.0 1 16 4 19 4 47 0.90 # 138000 # 138689 # 1 # ID=1_166;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.457 1_166 - 230 AAA_33 PF13671.1 143 6.3e-06 21.1 0.4 2 3 0.0041 1.7 3.4 0.0 19 59 56 97 49 101 0.83 # 138000 # 138689 # 1 # ID=1_166;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.457 1_166 - 230 AAA_33 PF13671.1 143 6.3e-06 21.1 0.4 3 3 0.0014 0.6 4.9 0.0 94 126 112 144 103 161 0.77 # 138000 # 138689 # 1 # ID=1_166;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.457 1_260 - 181 DnaB_C PF03796.10 259 0.0025 11.6 0.1 1 1 1e-05 0.0044 10.8 0.1 96 141 5 54 1 68 0.85 # 213313 # 213855 # -1 # ID=1_260;partial=00;start_type=GTG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.444 1_81 - 268 Methyltransf_20 PF12147.3 311 0.0024 11.7 0.0 1 1 8.4e-06 0.0036 11.1 0.0 167 221 120 176 79 198 0.70 # 67978 # 68781 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_193 - 1629 Methyltransf_26 PF13659.1 117 3.4e-12 41.4 0.0 1 1 7.8e-14 1.7e-11 39.2 0.0 3 116 137 245 135 246 0.87 # 158140 # 163026 # -1 # ID=1_193;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.436 1_299 - 295 Methyltransf_26 PF13659.1 117 0.0041 12.1 0.0 1 1 5.9e-05 0.013 10.5 0.0 3 81 31 185 30 201 0.71 # 240824 # 241708 # 1 # ID=1_299;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.443 1_416 - 439 AAA_30 PF13604.1 196 8.7e-07 23.6 0.1 1 2 1.6e-06 0.00035 15.1 0.0 3 43 237 278 235 289 0.80 # 331455 # 332771 # 1 # ID=1_416;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_416 - 439 AAA_30 PF13604.1 196 8.7e-07 23.6 0.1 2 2 0.00099 0.21 6.1 0.1 93 138 351 397 337 437 0.76 # 331455 # 332771 # 1 # ID=1_416;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_73 - 529 AAA_30 PF13604.1 196 4.5e-06 21.3 0.2 1 1 4.9e-08 1e-05 20.1 0.0 2 42 230 270 229 303 0.92 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_84 - 946 FtsK_SpoIIIE PF01580.13 205 2.4e-07 25.4 0.5 1 1 2.9e-08 4.1e-06 21.3 0.0 36 88 501 550 471 560 0.82 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_73 - 529 FtsK_SpoIIIE PF01580.13 205 6e-05 17.5 0.0 1 1 1.1e-06 0.00015 16.2 0.0 35 60 241 268 224 275 0.78 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_392 - 718 FtsK_SpoIIIE PF01580.13 205 0.0024 12.3 0.0 1 1 9.2e-05 0.013 9.9 0.0 31 65 190 223 157 241 0.73 # 309702 # 311855 # 1 # ID=1_392;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_313 - 345 RecA PF00154.16 323 4.8e-39 129.2 0.0 1 1 1.6e-40 6.6e-38 125.4 0.0 4 317 14 342 11 344 0.83 # 252192 # 253226 # 1 # ID=1_313;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_73 - 529 ABC_tran PF00005.22 137 0.0022 13.3 0.1 1 1 3.6e-05 0.0077 11.5 0.0 14 48 249 283 240 352 0.81 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_222 - 1213 ABC_tran PF00005.22 137 0.0051 12.1 0.0 1 1 2.4e-05 0.0051 12.1 0.0 15 31 30 46 24 58 0.89 # 183676 # 187314 # -1 # ID=1_222;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.434 1_166 - 230 TIGR03263 TIGR03263 180 4.8e-25 82.8 0.0 1 1 1.4e-27 6e-25 82.5 0.0 2 149 3 157 2 189 0.85 # 138000 # 138689 # 1 # ID=1_166;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.457 1_313 - 345 ATP-synt_ab PF00006.20 215 0.00069 14.1 0.0 1 1 2.1e-06 0.00088 13.7 0.0 11 59 53 101 41 214 0.87 # 252192 # 253226 # 1 # ID=1_313;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_255 - 413 NAD_binding_4 PF07993.7 249 0.00019 15.4 0.1 1 1 7.6e-07 0.00032 14.6 0.1 33 101 214 286 212 299 0.86 # 208429 # 209667 # 1 # ID=1_255;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.425 1_73 - 529 DAP3 PF10236.4 309 0.0027 11.6 0.0 1 2 0.074 31 -1.8 0.1 105 144 79 121 65 124 0.69 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_73 - 529 DAP3 PF10236.4 309 0.0027 11.6 0.0 2 2 2.1e-05 0.0089 9.9 0.0 19 61 242 284 234 297 0.86 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_53 - 342 RuvB_N PF05496.7 234 0.003 11.6 0.1 1 1 3.4e-05 0.014 9.3 0.1 54 88 72 107 67 208 0.75 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_73 - 529 AAA_19 PF13245.1 76 2.1e-05 19.2 0.0 1 1 5.2e-07 7.4e-05 17.4 0.0 1 46 236 288 236 301 0.74 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_416 - 439 AAA_19 PF13245.1 76 0.00025 15.7 0.4 1 1 8.9e-06 0.0013 13.5 0.0 9 44 251 285 243 293 0.71 # 331455 # 332771 # 1 # ID=1_416;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_84 - 946 AAA_19 PF13245.1 76 0.00043 15.0 0.0 1 1 8e-06 0.0011 13.6 0.0 14 54 507 553 499 581 0.66 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_84 - 946 AAA_10 PF12846.2 304 6.1e-32 106.1 0.0 1 1 8.7e-34 9.2e-32 105.6 0.0 5 303 507 851 503 852 0.79 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_392 - 718 AAA_10 PF12846.2 304 4e-14 47.7 0.0 1 1 4.6e-15 4.8e-13 44.1 0.0 1 297 196 603 196 607 0.64 # 309702 # 311855 # 1 # ID=1_392;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_73 - 529 AAA_10 PF12846.2 304 1.1e-05 19.9 0.0 1 2 0.049 5.2 1.3 0.0 49 170 25 179 7 222 0.51 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_73 - 529 AAA_10 PF12846.2 304 1.1e-05 19.9 0.0 2 2 1.5e-06 0.00015 16.2 0.0 2 37 247 283 246 287 0.88 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_313 - 345 AAA_10 PF12846.2 304 0.00035 15.0 0.0 1 1 4.9e-06 0.00052 14.4 0.0 6 49 62 105 61 178 0.88 # 252192 # 253226 # 1 # ID=1_313;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_196 - 259 ThiF PF00899.16 136 1.8e-12 42.2 0.0 1 1 8.6e-15 3.7e-12 41.2 0.0 2 122 14 139 13 153 0.87 # 164934 # 165710 # -1 # ID=1_196;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.441 1_305 - 787 ResIII PF04851.10 184 1.2e-13 46.2 0.0 1 2 1.7e-08 2.5e-06 22.4 0.0 4 70 166 230 163 247 0.83 # 244227 # 246587 # 1 # ID=1_305;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.442 1_305 - 787 ResIII PF04851.10 184 1.2e-13 46.2 0.0 2 2 1.7e-08 2.4e-06 22.5 0.0 132 183 240 295 227 296 0.77 # 244227 # 246587 # 1 # ID=1_305;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.442 1_193 - 1629 ResIII PF04851.10 184 5.4e-07 24.5 0.1 1 1 3.8e-09 5.4e-07 24.5 0.1 2 154 775 959 774 960 0.81 # 158140 # 163026 # -1 # ID=1_193;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.436 1_73 - 529 ResIII PF04851.10 184 0.00042 15.1 0.0 1 1 6.2e-06 0.00087 14.1 0.0 3 50 229 271 227 281 0.81 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_84 - 946 Zot PF05707.7 193 0.00041 14.8 0.1 1 2 0.063 27 -0.9 0.1 5 16 508 519 505 533 0.76 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_84 - 946 Zot PF05707.7 193 0.00041 14.8 0.1 2 2 4.8e-06 0.002 12.5 0.0 64 138 754 825 728 865 0.84 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_222 - 1213 DUF3584 PF12128.3 1201 4.2e-156 516.1 56.2 1 1 1.2e-158 5.1e-156 515.8 56.2 3 1201 11 1185 9 1185 0.93 # 183676 # 187314 # -1 # ID=1_222;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.434 1_166 - 230 Viral_helicase1 PF01443.13 234 0.0033 11.9 0.0 1 1 2.1e-05 0.0045 11.4 0.0 2 21 6 25 5 66 0.66 # 138000 # 138689 # 1 # ID=1_166;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.457 1_53 - 342 Viral_helicase1 PF01443.13 234 0.0048 11.3 0.0 1 1 4.1e-05 0.0087 10.5 0.0 8 78 78 151 72 165 0.83 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_84 - 946 DUF2075 PF09848.4 352 4.1e-06 20.9 0.2 1 2 1.9e-05 0.0027 11.6 0.0 6 47 508 547 503 566 0.76 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_84 - 946 DUF2075 PF09848.4 352 4.1e-06 20.9 0.2 2 2 0.00046 0.065 7.1 0.0 64 175 751 858 733 911 0.63 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_416 - 439 DUF2075 PF09848.4 352 0.00014 15.9 0.0 1 1 1.5e-06 0.00022 15.2 0.0 3 43 254 294 252 302 0.93 # 331455 # 332771 # 1 # ID=1_416;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_73 - 529 DUF2075 PF09848.4 352 0.001 13.0 0.0 1 1 1.2e-05 0.0016 12.3 0.0 4 91 249 332 246 362 0.76 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_167 - 187 Ribosomal_L18p PF00861.17 119 0.0016 13.6 0.1 1 1 6.1e-06 0.0026 12.9 0.1 13 71 29 88 23 111 0.89 # 138875 # 139435 # -1 # ID=1_167;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.428 1_305 - 787 DEAD PF00270.24 169 0.0014 13.1 0.0 1 2 0.0037 0.52 4.7 0.0 14 64 184 230 170 241 0.74 # 244227 # 246587 # 1 # ID=1_305;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.442 1_305 - 787 DEAD PF00270.24 169 0.0014 13.1 0.0 2 2 0.0018 0.26 5.7 0.0 120 162 255 294 238 299 0.77 # 244227 # 246587 # 1 # ID=1_305;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=11-12bp;gc_cont=0.442 1_193 - 1629 DEAD PF00270.24 169 0.0016 12.9 0.9 1 1 3e-05 0.0043 11.5 0.1 2 83 779 858 778 975 0.82 # 158140 # 163026 # -1 # ID=1_193;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.436 1_73 - 529 DEAD PF00270.24 169 0.0022 12.4 0.0 1 1 3.6e-05 0.005 11.3 0.0 4 31 234 263 231 374 0.90 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_84 - 946 DUF853 PF05872.7 504 0.00035 13.9 0.0 1 2 0.011 4.8 0.3 0.0 18 44 500 526 493 531 0.87 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_84 - 946 DUF853 PF05872.7 504 0.00035 13.9 0.0 2 2 9.4e-06 0.004 10.4 0.0 241 305 754 816 731 827 0.82 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_392 - 718 TrwB_AAD_bind PF10412.4 386 7.8e-18 59.1 0.0 1 2 9e-07 0.00019 15.0 0.0 13 54 194 236 187 240 0.90 # 309702 # 311855 # 1 # ID=1_392;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_392 - 718 TrwB_AAD_bind PF10412.4 386 7.8e-18 59.1 0.0 2 2 6.8e-15 1.4e-12 41.8 0.0 240 377 521 676 493 684 0.83 # 309702 # 311855 # 1 # ID=1_392;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_84 - 946 TrwB_AAD_bind PF10412.4 386 0.0001 15.9 0.0 1 2 0.0092 2 1.9 0.0 9 40 497 528 489 544 0.76 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_84 - 946 TrwB_AAD_bind PF10412.4 386 0.0001 15.9 0.0 2 2 9.9e-06 0.0021 11.6 0.0 215 304 739 830 726 890 0.69 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_73 - 529 AAA_11 PF13086.1 236 0.00013 16.5 0.3 1 2 0.047 20 -0.4 0.1 121 155 70 104 38 128 0.56 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_73 - 529 AAA_11 PF13086.1 236 0.00013 16.5 0.3 2 2 1.3e-06 0.00055 14.5 0.0 4 106 232 397 229 463 0.76 # 61850 # 63436 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.456 1_166 - 230 Guanylate_kin PF00625.16 183 5.5e-20 66.5 0.0 1 1 1.9e-22 7.9e-20 66.0 0.0 4 150 4 152 1 184 0.79 # 138000 # 138689 # 1 # ID=1_166;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.457 1_53 - 342 Sigma54_activ_2 PF14532.1 138 0.00048 15.1 0.0 1 1 4e-06 0.0017 13.4 0.0 21 113 68 190 56 202 0.75 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_392 - 718 T4SS-DNA_transf PF02534.9 469 7.8e-08 26.2 0.0 1 2 2.5e-05 0.011 9.3 0.0 39 116 194 275 175 290 0.84 # 309702 # 311855 # 1 # ID=1_392;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_392 - 718 T4SS-DNA_transf PF02534.9 469 7.8e-08 26.2 0.0 2 2 6.9e-07 0.00029 14.4 0.0 209 437 410 677 358 685 0.66 # 309702 # 311855 # 1 # ID=1_392;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_155 - 648 DNA_ligase_OB PF03120.11 82 5.1e-14 46.7 0.1 1 1 2.5e-16 1.1e-13 45.7 0.1 2 73 298 369 297 374 0.96 # 126913 # 128856 # -1 # ID=1_155;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.459 1_299 - 295 MethyltransfD12 PF02086.10 260 2e-41 137.1 0.1 1 1 5.9e-44 2.5e-41 136.8 0.1 1 236 9 225 9 248 0.87 # 240824 # 241708 # 1 # ID=1_299;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.443 1_222 - 1213 NACHT PF05729.7 166 0.0089 10.6 4.9 1 2 0.001 0.44 5.1 0.1 5 20 31 46 29 57 0.90 # 183676 # 187314 # -1 # ID=1_222;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.434 1_222 - 1213 NACHT PF05729.7 166 0.0089 10.6 4.9 2 2 0.00096 0.41 5.2 0.0 100 158 945 1001 921 1007 0.85 # 183676 # 187314 # -1 # ID=1_222;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.434 1_313 - 345 AAA_25 PF13481.1 194 1.6e-07 25.8 0.0 1 1 4.5e-09 9.6e-07 23.3 0.0 9 167 32 159 26 163 0.75 # 252192 # 253226 # 1 # ID=1_313;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_84 - 946 AAA_25 PF13481.1 194 0.0018 12.6 0.0 1 1 2.3e-05 0.0048 11.2 0.0 33 58 503 528 492 559 0.84 # 70612 # 73449 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.459 1_313 - 345 Rad51 PF08423.6 256 3.7e-07 24.2 0.0 1 2 3.3e-09 1.4e-06 22.3 0.0 14 217 33 228 23 266 0.71 # 252192 # 253226 # 1 # ID=1_313;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_313 - 345 Rad51 PF08423.6 256 3.7e-07 24.2 0.0 2 2 0.075 32 -1.8 0.0 13 36 298 322 293 328 0.79 # 252192 # 253226 # 1 # ID=1_313;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_53 - 342 AAA_5 PF07728.9 139 3.6e-19 63.8 0.0 1 2 4.4e-21 1.9e-18 61.5 0.0 2 139 71 200 70 200 0.97 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_53 - 342 AAA_5 PF07728.9 139 3.6e-19 63.8 0.0 2 2 0.046 20 -0.1 0.0 121 139 297 315 253 315 0.77 # 41928 # 42953 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4a513e77-1de3-4b8a-9c2e-7975507d3906 # Target file: checkm_output/bins/pGCA_001677275.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001677275.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4a513e77-1de3-4b8a-9c2e-7975507d3906 checkm_output/bins/pGCA_001677275.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:45:53 2020 # [ok]