# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_8 - 108 UPF0020 PF01170.13 180 3.2e-06 19.3 0.0 1 1 5e-08 3.8e-06 19.1 0.0 103 177 11 85 3 88 0.83 # 3078 # 3401 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.333 1_40 - 206 Seryl_tRNA_N PF02403.17 108 0.015 7.9 10.2 1 1 0.00016 0.012 8.2 8.5 37 90 29 82 24 98 0.81 # 30645 # 31262 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.401 1_37 - 460 IstB_IS21 PF01695.12 178 7.2e-05 14.7 0.1 1 3 2.3e-05 0.0017 10.3 0.0 33 61 39 71 7 92 0.68 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_37 - 460 IstB_IS21 PF01695.12 178 7.2e-05 14.7 0.1 2 3 0.054 4.1 -0.7 0.0 92 118 147 173 136 181 0.75 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_37 - 460 IstB_IS21 PF01695.12 178 7.2e-05 14.7 0.1 3 3 0.03 2.2 0.1 0.0 112 151 290 329 277 347 0.76 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_23 - 264 MipZ PF09140.6 261 3e-07 22.2 0.0 1 1 1.4e-08 1.1e-06 20.4 0.0 2 129 3 148 2 172 0.61 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_23 - 264 YhjQ PF06564.7 244 7.7e-08 24.4 0.0 1 1 2.8e-09 2.1e-07 23.0 0.0 1 149 1 149 1 163 0.73 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 3_5 - 383 3HCDH_N PF02737.13 180 6.9e-06 18.3 0.2 1 1 4.6e-07 1.7e-05 17.0 0.2 1 39 104 142 104 184 0.83 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_9 - 249 3HCDH_N PF02737.13 180 0.0011 11.1 1.1 1 1 4.2e-05 0.0016 10.6 0.2 2 30 6 34 5 56 0.91 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 GIDA PF01134.17 392 1.3e-09 29.9 8.7 1 3 7.6e-11 5.7e-09 27.7 0.1 1 48 5 62 5 80 0.86 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 GIDA PF01134.17 392 1.3e-09 29.9 8.7 2 3 8e-05 0.006 7.9 0.1 111 162 74 124 63 136 0.76 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 GIDA PF01134.17 392 1.3e-09 29.9 8.7 3 3 0.065 4.9 -1.7 0.1 115 138 199 222 173 247 0.68 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 Pyr_redox_2 PF07992.9 201 1.3e-25 82.9 1.9 1 1 6.6e-27 1.6e-25 82.6 1.9 1 191 5 234 5 238 0.82 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_5 - 383 Pyr_redox_2 PF07992.9 201 9.5e-25 80.1 0.2 1 1 2.2e-25 5.5e-24 77.6 0.2 78 198 39 240 5 242 0.86 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_6 - 51 Pyr_redox_2 PF07992.9 201 3.8e-07 22.7 0.0 1 1 1.5e-08 3.9e-07 22.6 0.0 1 43 4 48 4 50 0.94 # 3644 # 3796 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_37 - 460 DUF87 PF01935.12 229 1.9e-11 36.7 2.5 1 1 4.7e-13 3.6e-11 35.8 2.1 16 186 50 232 43 272 0.68 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_37 - 460 AAA_22 PF13401.1 131 5.8e-06 19.0 0.1 1 2 1.6e-05 0.00058 12.5 0.0 6 49 59 96 54 176 0.62 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_37 - 460 AAA_22 PF13401.1 131 5.8e-06 19.0 0.1 2 2 0.0098 0.37 3.5 0.0 73 108 274 308 258 337 0.66 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_23 - 264 AAA_22 PF13401.1 131 0.00012 14.7 0.2 1 1 2.2e-05 0.00083 12.0 0.0 14 53 12 46 5 57 0.87 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_42 - 157 tRNA_anti-like PF12869.2 144 1e-05 17.6 0.1 1 1 2.2e-07 1.6e-05 16.9 0.1 6 60 70 139 67 143 0.89 # 31618 # 32088 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 3_9 - 249 NAD_binding_7 PF13241.1 103 2.3e-05 17.2 0.1 1 2 0.0039 0.15 4.9 0.0 7 45 3 68 1 118 0.57 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 NAD_binding_7 PF13241.1 103 2.3e-05 17.2 0.1 2 2 9.4e-05 0.0035 10.1 0.0 5 57 141 192 140 237 0.78 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_5 - 383 NAD_binding_7 PF13241.1 103 2.9e-05 16.8 0.1 1 1 2e-06 7.5e-05 15.5 0.0 7 44 102 139 97 203 0.77 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_37 - 460 AAA_17 PF13207.1 121 0.0052 10.1 7.5 1 1 0.0036 0.27 4.6 7.4 3 16 61 74 59 390 0.91 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_23 - 264 MobB PF03205.9 140 0.00011 14.4 0.0 1 1 8.9e-06 0.00033 12.9 0.0 10 45 12 45 5 49 0.93 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_37 - 460 MobB PF03205.9 140 0.00024 13.3 0.0 1 1 2.2e-05 0.00082 11.6 0.0 4 32 61 89 59 95 0.84 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 3_5 - 383 Semialdhyde_dh PF01118.19 121 2.3e-05 17.2 0.1 1 1 6.2e-07 4.7e-05 16.2 0.1 1 44 104 146 104 181 0.73 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_23 - 264 ArsA_ATPase PF02374.10 305 2.7e-10 32.2 0.2 1 1 9.5e-12 7.1e-10 30.8 0.0 1 49 1 50 1 131 0.74 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 3_5 - 383 Shikimate_DH PF01488.15 135 0.0004 13.0 0.0 1 1 1.8e-05 0.0014 11.3 0.0 13 56 103 145 93 197 0.85 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_27 - 89 Zeta_toxin PF06414.7 201 1.2e-09 30.0 0.2 1 1 1.9e-11 1.4e-09 29.8 0.2 85 146 6 69 4 84 0.91 # 20288 # 20554 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.386 3_9 - 249 NAD_binding_8 PF13450.1 68 2.1e-07 23.5 1.1 1 1 1.9e-08 7.1e-07 21.8 0.1 1 38 8 44 8 61 0.83 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_5 - 383 NAD_binding_8 PF13450.1 68 4.4e-05 16.0 0.2 1 2 2.1e-05 0.00077 12.0 0.2 1 25 107 131 107 137 0.96 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 NAD_binding_8 PF13450.1 68 4.4e-05 16.0 0.2 2 2 0.052 1.9 1.1 0.0 23 35 325 337 314 363 0.84 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 FAD_binding_3 PF01494.14 356 1.3e-07 23.4 0.7 1 1 7.8e-09 2.9e-07 22.3 0.7 3 58 104 159 103 251 0.85 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_9 - 249 FAD_binding_3 PF01494.14 356 5.1e-05 14.9 3.5 1 2 5e-06 0.00019 13.0 0.2 2 32 4 34 3 36 0.91 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 FAD_binding_3 PF01494.14 356 5.1e-05 14.9 3.5 2 2 0.0089 0.34 2.3 0.1 109 159 176 228 153 231 0.81 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 1_23 - 264 VirC1 PF07015.6 231 7e-09 27.5 0.0 1 2 2.9e-09 2.2e-07 22.6 0.0 1 46 1 46 1 59 0.91 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_23 - 264 VirC1 PF07015.6 231 7e-09 27.5 0.0 2 2 0.0029 0.21 3.0 0.0 72 112 106 146 94 224 0.84 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_23 - 264 Fer4_NifH PF00142.13 273 1.9e-07 23.0 0.1 1 2 5e-07 3.7e-05 15.5 0.0 8 69 10 68 3 81 0.89 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_23 - 264 Fer4_NifH PF00142.13 273 1.9e-07 23.0 0.1 2 2 0.00049 0.036 5.7 0.0 186 237 195 248 165 262 0.70 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_37 - 460 Arch_ATPase PF01637.13 234 1.4e-06 20.6 3.1 1 1 1.1e-07 8.2e-06 18.1 3.1 20 136 57 180 51 288 0.81 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_37 - 460 AAA_16 PF13191.1 185 2.1e-05 17.0 0.1 1 1 2.1e-05 0.0016 10.9 0.1 24 51 57 85 46 312 0.86 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_23 - 264 CbiA PF01656.18 195 3.4e-25 81.1 0.0 1 1 5.9e-27 4.4e-25 80.7 0.0 1 188 4 218 4 225 0.75 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 1_37 - 460 AAA_14 PF13173.1 128 7.1e-07 21.7 2.4 1 2 1.5e-06 5.5e-05 15.6 1.0 3 81 58 158 56 262 0.76 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_37 - 460 AAA_14 PF13173.1 128 7.1e-07 21.7 2.4 2 2 0.01 0.37 3.2 0.0 49 91 267 316 244 351 0.54 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_23 - 264 AAA_14 PF13173.1 128 1.7e-05 17.2 1.4 1 1 1.1e-06 4.2e-05 16.0 0.5 12 56 12 63 8 175 0.78 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 3_9 - 249 HI0933_like PF03486.9 409 1.6e-08 25.8 8.2 1 3 7.3e-09 2.7e-07 21.8 0.9 1 32 4 35 4 41 0.94 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 HI0933_like PF03486.9 409 1.6e-08 25.8 8.2 2 3 0.00012 0.0047 7.9 0.1 130 165 79 113 60 121 0.84 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 HI0933_like PF03486.9 409 1.6e-08 25.8 8.2 3 3 0.087 3.3 -1.5 0.0 117 152 187 221 175 232 0.76 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_5 - 383 HI0933_like PF03486.9 409 0.00045 11.2 2.9 1 3 0.0062 0.23 2.2 0.0 142 167 55 79 20 81 0.84 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 HI0933_like PF03486.9 409 0.00045 11.2 2.9 2 3 0.0012 0.046 4.6 0.5 2 34 104 136 103 142 0.88 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 HI0933_like PF03486.9 409 0.00045 11.2 2.9 3 3 0.0048 0.18 2.6 0.0 113 163 147 197 141 202 0.82 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_37 - 460 AAA_29 PF13555.1 62 0.00045 12.3 0.0 1 1 1.8e-05 0.0014 10.7 0.0 24 40 58 74 48 84 0.81 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 3_9 - 249 FAD_binding_2 PF00890.19 417 7.3e-12 37.2 3.4 1 2 3.1e-10 1.2e-08 26.7 0.5 1 32 5 36 5 43 0.91 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 FAD_binding_2 PF00890.19 417 7.3e-12 37.2 3.4 2 2 1.8e-05 0.00068 11.0 0.0 145 204 182 242 145 246 0.90 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_6 - 51 FAD_binding_2 PF00890.19 417 0.00047 11.5 0.0 1 1 1.3e-05 0.0005 11.4 0.0 1 32 4 35 4 41 0.93 # 3644 # 3796 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_37 - 460 TK PF00265.13 176 6.4e-05 15.1 0.3 1 2 5.7e-06 0.00042 12.4 0.1 5 45 61 101 58 161 0.71 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_37 - 460 TK PF00265.13 176 6.4e-05 15.1 0.3 2 2 0.037 2.8 -0.1 0.0 66 89 273 299 257 311 0.63 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 3_9 - 249 Thi4 PF01946.12 230 2.3e-08 25.9 6.3 1 2 5.5e-10 4.1e-08 25.0 0.1 17 50 3 36 1 43 0.89 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 Thi4 PF01946.12 230 2.3e-08 25.9 6.3 2 2 0.002 0.15 3.5 0.2 18 46 144 172 137 178 0.82 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 Pyr_redox_3 PF13738.1 203 1.1e-18 60.5 5.4 1 2 1.3e-08 4.7e-07 22.5 0.6 1 41 7 45 7 69 0.84 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 Pyr_redox_3 PF13738.1 203 1.1e-18 60.5 5.4 2 2 5.1e-14 1.9e-12 40.1 0.1 98 200 75 176 57 179 0.81 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_5 - 383 Pyr_redox_3 PF13738.1 203 1.8e-16 53.3 0.1 1 2 3.1e-13 1.2e-11 37.5 0.0 113 199 54 134 17 136 0.86 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 Pyr_redox_3 PF13738.1 203 1.8e-16 53.3 0.1 2 2 6.5e-06 0.00024 13.7 0.0 84 148 146 212 141 266 0.82 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 2_8 - 108 N6_Mtase PF02384.11 311 6e-07 21.2 0.1 1 1 1.9e-07 1.4e-05 16.7 0.1 119 181 8 55 3 105 0.59 # 3078 # 3401 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.333 1_37 - 460 DUF258 PF03193.11 161 0.00045 11.9 0.0 1 1 1.7e-05 0.0013 10.4 0.0 34 51 56 73 37 93 0.77 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_1 - 206 TraG-D_C PF12696.2 128 1.6e-32 104.6 0.1 1 1 6.4e-34 1.6e-32 104.6 0.1 25 128 1 101 1 101 0.89 # 1 # 618 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_37 - 460 TraG-D_C PF12696.2 128 1.1e-05 17.8 0.3 1 1 2.8e-06 6.9e-05 15.2 0.3 15 126 305 447 289 449 0.66 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_43 - 303 TraG-D_C PF12696.2 128 0.00014 14.2 0.2 1 1 1.4e-05 0.00035 13.0 0.1 2 22 282 302 281 303 0.91 # 32090 # 32998 # 1 # ID=1_43;partial=01;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.413 3_5 - 383 NAD_binding_2 PF03446.10 163 2.9e-05 16.4 0.1 1 1 8.1e-07 6.1e-05 15.4 0.1 2 49 103 150 102 196 0.81 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_23 - 264 AAA_31 PF13614.1 157 3.3e-11 35.8 0.1 1 1 1e-12 7.6e-11 34.7 0.1 2 131 3 131 2 142 0.74 # 16653 # 17444 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.336 2_8 - 108 Methyltransf_26 PF13659.1 117 7.9e-06 18.4 0.0 1 1 1.5e-07 1.2e-05 17.9 0.0 68 104 12 49 4 56 0.74 # 3078 # 3401 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.333 3_5 - 383 NAD_Gly3P_dh_N PF01210.18 157 6.3e-06 18.5 0.0 1 1 1.5e-07 1.2e-05 17.6 0.0 1 63 104 173 104 180 0.71 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 2-Hacid_dh_C PF02826.14 178 4.6e-06 18.4 0.0 1 1 1.3e-07 9.7e-06 17.3 0.0 35 78 101 144 86 172 0.81 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 ApbA PF02558.11 151 8.6e-07 21.0 0.2 1 2 8.5e-08 6.4e-06 18.2 0.1 1 35 105 140 105 186 0.88 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 ApbA PF02558.11 151 8.6e-07 21.0 0.2 2 2 0.032 2.4 0.1 0.0 35 94 283 347 259 354 0.75 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_37 - 460 FtsK_SpoIIIE PF01580.13 205 7.9e-06 17.9 0.0 1 1 2.9e-07 2.2e-05 16.5 0.0 39 80 58 95 36 110 0.78 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 3_9 - 249 Lycopene_cycl PF05834.7 374 1.8e-07 22.8 2.6 1 2 1.7e-06 0.00013 13.4 0.7 1 33 5 35 5 43 0.91 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 Lycopene_cycl PF05834.7 374 1.8e-07 22.8 2.6 2 2 3.7e-05 0.0028 9.0 0.0 79 155 51 127 37 134 0.77 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_5 - 383 K_oxygenase PF13434.1 341 2.6e-06 19.0 0.0 1 2 2.1e-07 7.7e-06 17.4 0.0 139 239 58 149 42 153 0.77 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 K_oxygenase PF13434.1 341 2.6e-06 19.0 0.0 2 2 0.054 2 -0.4 0.0 280 321 142 185 126 198 0.66 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_9 - 249 K_oxygenase PF13434.1 341 3.7e-06 18.5 3.7 1 3 0.0027 0.1 3.9 0.0 2 34 3 34 2 36 0.74 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 K_oxygenase PF13434.1 341 3.7e-06 18.5 3.7 2 3 0.00012 0.0046 8.3 0.6 188 228 141 179 75 183 0.64 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 K_oxygenase PF13434.1 341 3.7e-06 18.5 3.7 3 3 0.0009 0.034 5.5 0.0 286 335 181 235 175 239 0.80 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 2_8 - 108 Eco57I PF07669.6 106 2.2e-29 94.5 0.5 1 1 3.7e-31 2.8e-29 94.2 0.5 1 96 13 103 13 106 0.95 # 3078 # 3401 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.333 3_5 - 383 UDPG_MGDP_dh_N PF03721.9 185 3.4e-07 22.3 0.4 1 2 1.5e-08 1.1e-06 20.6 0.1 2 29 104 131 103 155 0.92 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 UDPG_MGDP_dh_N PF03721.9 185 3.4e-07 22.3 0.4 2 2 0.067 5 -1.1 0.0 16 41 324 349 321 366 0.84 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 NAD_binding_10 PF13460.1 183 7.4e-06 18.6 0.0 1 1 2e-07 1.5e-05 17.6 0.0 1 38 105 143 105 157 0.86 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_37 - 460 AAA_10 PF12846.2 304 3.3e-57 186.6 0.7 1 1 1.8e-58 4.5e-57 186.2 0.7 1 294 57 366 57 375 0.89 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_43 - 303 AAA_10 PF12846.2 304 4e-09 28.7 0.2 1 1 1.8e-10 4.6e-09 28.6 0.2 1 231 23 291 23 303 0.57 # 32090 # 32998 # 1 # ID=1_43;partial=01;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_1 - 206 AAA_10 PF12846.2 304 0.00019 13.4 0.0 1 1 1.6e-05 0.00039 12.4 0.0 250 302 2 58 1 60 0.91 # 1 # 618 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 3_9 - 249 FAD_oxidored PF12831.2 428 3.4e-09 28.7 6.3 1 3 2.9e-10 2.2e-08 26.0 3.8 1 38 5 41 5 94 0.92 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 FAD_oxidored PF12831.2 428 3.4e-09 28.7 6.3 2 3 0.057 4.3 -1.3 0.0 89 137 59 103 42 113 0.70 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 FAD_oxidored PF12831.2 428 3.4e-09 28.7 6.3 3 3 0.004 0.3 2.5 0.0 87 135 175 226 146 232 0.82 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 1_17 - 308 DNA_photolyase PF00875.13 165 5.2e-05 15.5 0.5 1 1 1.6e-06 0.00012 14.3 0.1 30 131 176 280 163 296 0.78 # 11894 # 12817 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.451 3_9 - 249 DAO PF01266.19 358 1.1e-14 46.5 5.7 1 3 1.4e-09 5.3e-08 24.5 0.2 1 35 5 39 5 43 0.93 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 DAO PF01266.19 358 1.1e-14 46.5 5.7 2 3 1e-07 3.8e-06 18.5 0.1 151 206 63 117 50 149 0.85 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 DAO PF01266.19 358 1.1e-14 46.5 5.7 3 3 0.0014 0.052 4.8 0.0 156 201 187 233 174 236 0.79 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_5 - 383 DAO PF01266.19 358 3.8e-09 28.3 3.7 1 3 0.021 0.8 0.9 0.0 149 200 30 75 24 79 0.74 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 DAO PF01266.19 358 3.8e-09 28.3 3.7 2 3 1.3e-06 4.9e-05 14.8 0.6 2 31 105 134 104 140 0.91 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 DAO PF01266.19 358 3.8e-09 28.3 3.7 3 3 1.7e-05 0.00065 11.1 0.1 152 200 148 197 142 198 0.84 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 ThiF PF00899.16 136 0.00065 12.0 0.4 1 1 3e-05 0.0023 10.3 0.2 4 28 104 128 102 136 0.87 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 2_13 - 259 ResIII PF04851.10 184 1.6e-11 36.9 0.2 1 1 4.8e-13 3.6e-11 35.7 0.0 2 125 130 253 129 254 0.94 # 5796 # 6572 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 3_5 - 383 NAD_binding_9 PF13454.1 156 1.1e-05 17.8 1.1 1 2 0.059 2.2 0.5 0.0 135 155 56 76 29 77 0.80 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 NAD_binding_9 PF13454.1 156 1.1e-05 17.8 1.1 2 2 3.2e-06 0.00012 14.4 0.0 100 154 142 197 134 199 0.89 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_9 - 249 NAD_binding_9 PF13454.1 156 1.3e-05 17.5 3.6 1 2 0.00043 0.016 7.5 0.1 1 45 7 45 7 50 0.78 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 NAD_binding_9 PF13454.1 156 1.3e-05 17.5 3.6 2 2 4.9e-05 0.0018 10.5 0.2 115 155 72 112 63 113 0.89 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_5 - 383 Pyr_redox PF00070.22 80 3.6e-19 61.5 0.2 1 1 1.9e-20 7.2e-19 60.6 0.2 1 75 104 177 104 184 0.84 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_9 - 249 Pyr_redox PF00070.22 80 1.7e-18 59.4 2.8 1 2 6.9e-05 0.0026 10.7 0.1 2 31 6 35 5 46 0.92 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 3_9 - 249 Pyr_redox PF00070.22 80 1.7e-18 59.4 2.8 2 2 1.2e-16 4.5e-15 48.4 0.1 2 78 146 218 145 225 0.94 # 4821 # 5567 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.383 1_1 - 206 TrwB_AAD_bind PF10412.4 386 2.2e-19 61.8 0.1 1 1 1.2e-20 3.1e-19 61.3 0.1 269 381 2 115 1 119 0.89 # 1 # 618 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_43 - 303 TrwB_AAD_bind PF10412.4 386 5e-11 34.2 0.0 1 2 3.8e-11 9.5e-10 30.0 0.0 13 136 21 150 13 162 0.82 # 32090 # 32998 # 1 # ID=1_43;partial=01;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_43 - 303 TrwB_AAD_bind PF10412.4 386 5e-11 34.2 0.0 2 2 0.01 0.25 2.3 0.0 214 265 247 302 182 303 0.67 # 32090 # 32998 # 1 # ID=1_43;partial=01;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_37 - 460 TrwB_AAD_bind PF10412.4 386 4.2e-08 24.6 0.2 1 2 8.8e-06 0.00022 12.4 0.0 12 56 54 98 44 106 0.75 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_37 - 460 TrwB_AAD_bind PF10412.4 386 4.2e-08 24.6 0.2 2 2 5e-05 0.0013 9.9 0.0 237 312 280 362 267 451 0.82 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_43 - 303 T4SS-DNA_transf PF02534.9 469 4.9e-82 268.4 1.9 1 1 1.5e-83 5.7e-82 268.1 1.9 45 326 24 303 4 303 0.96 # 32090 # 32998 # 1 # ID=1_43;partial=01;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_1 - 206 T4SS-DNA_transf PF02534.9 469 1.8e-45 147.8 1.2 1 1 5.6e-47 2.1e-45 147.6 1.2 328 458 1 164 1 199 0.87 # 1 # 618 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 2_16 - 188 tRNA-synt_His PF13393.1 311 0.00018 13.1 1.0 1 1 4.3e-06 0.00032 12.3 1.0 159 232 83 157 77 168 0.79 # 7623 # 8186 # -1 # ID=2_16;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=4bp;gc_cont=0.332 1_37 - 460 Pox_A32 PF04665.7 241 2e-05 16.5 0.3 1 1 4.8e-07 3.6e-05 15.6 0.3 14 57 58 99 48 187 0.70 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 3_5 - 383 TrkA_N PF02254.13 116 0.00039 13.0 0.0 1 2 4.4e-05 0.0033 10.0 0.0 1 38 105 142 105 155 0.82 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 3_5 - 383 TrkA_N PF02254.13 116 0.00039 13.0 0.0 2 2 0.061 4.6 -0.2 0.0 4 36 334 365 332 376 0.80 # 2466 # 3614 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_37 - 460 UvrD-helicase PF00580.16 315 0.001 10.8 5.2 1 2 3.3e-05 0.0025 9.6 0.1 11 39 55 83 48 95 0.85 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_37 - 460 UvrD-helicase PF00580.16 315 0.001 10.8 5.2 2 2 0.0048 0.36 2.5 1.4 78 125 281 334 85 443 0.68 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 1_37 - 460 AAA_25 PF13481.1 194 0.00036 12.4 0.0 1 1 8.9e-06 0.00066 11.6 0.0 32 59 56 84 28 173 0.75 # 26685 # 28064 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f417fbce-a2e7-40ed-bc16-b1b4e2cf4157 # Target file: checkm_output/bins/pGCA_001659745.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001659745.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f417fbce-a2e7-40ed-bc16-b1b4e2cf4157 checkm_output/bins/pGCA_001659745.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:45:01 2020 # [ok]