# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_3 - 246 Methyltransf_32 PF13679.1 141 8.8e-06 17.9 0.0 1 1 1.9e-07 1.4e-05 17.3 0.0 12 70 17 68 9 121 0.82 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 4_3 - 246 RrnaAD PF00398.15 262 1.2e-74 243.0 7.0 1 1 1.9e-76 1.4e-74 242.9 7.0 3 261 2 242 1 243 0.96 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_37 - 215 Seryl_tRNA_N PF02403.17 108 0.0058 9.2 17.0 1 1 0.00016 0.012 8.2 17.0 32 103 48 121 25 125 0.76 # 33206 # 33850 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.374 2_5 - 640 FeoB_N PF02421.13 156 0.00024 12.9 0.1 1 1 2e-05 0.0015 10.3 0.1 32 138 53 152 49 159 0.75 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 1_7 - 319 MipZ PF09140.6 261 5.2e-05 14.8 0.1 1 2 5.6e-05 0.0041 8.6 0.0 2 41 7 50 6 88 0.77 # 5471 # 6427 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 1_7 - 319 MipZ PF09140.6 261 5.2e-05 14.8 0.1 2 2 0.0012 0.09 4.2 0.0 83 125 125 167 109 174 0.82 # 5471 # 6427 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 2_5 - 640 AIG1 PF04548.11 212 0.0002 12.9 0.0 1 1 5.6e-06 0.00041 11.9 0.0 23 62 50 81 30 105 0.79 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 1_54 - 162 SSB PF00436.20 104 1.4e-40 129.9 0.6 1 1 2.7e-42 1.9e-40 129.4 0.6 1 104 2 103 2 103 0.98 # 50274 # 50759 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 4_3 - 246 Methyltransf_18 PF12847.2 112 9.8e-10 31.5 0.0 1 1 1.9e-11 1.4e-09 31.0 0.0 2 74 30 98 29 151 0.87 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 3_4 - 306 AAA_22 PF13401.1 131 0.00053 12.6 0.2 1 1 4.1e-05 0.0015 11.2 0.2 9 66 35 87 29 191 0.67 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 1_35 - 675 AAA_22 PF13401.1 131 0.00063 12.4 0.5 1 2 0.078 2.8 0.6 0.0 36 69 84 129 61 182 0.72 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 675 AAA_22 PF13401.1 131 0.00063 12.4 0.5 2 2 0.00078 0.029 7.0 0.0 7 28 270 291 264 310 0.89 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 4_3 - 246 Methyltransf_11 PF08241.7 95 4.3e-05 16.5 0.0 1 1 1.2e-06 8.6e-05 15.5 0.0 2 59 35 92 34 100 0.85 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 3_4 - 306 AAA_15 PF13175.1 415 4.8e-06 18.2 1.0 1 2 0.005 0.36 2.2 0.0 24 42 32 50 9 133 0.80 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 3_4 - 306 AAA_15 PF13175.1 415 4.8e-06 18.2 1.0 2 2 8.3e-07 6e-05 14.6 0.3 372 410 153 191 130 193 0.91 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 1_35 - 675 AAA_17 PF13207.1 121 6.1e-05 16.3 0.2 1 2 1.8e-05 0.0013 12.0 0.0 6 31 274 295 271 399 0.67 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 675 AAA_17 PF13207.1 121 6.1e-05 16.3 0.2 2 2 0.084 6.1 0.2 0.0 50 97 449 489 427 556 0.71 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 3_4 - 306 AAA_21 PF13304.1 303 4.8e-13 42.1 6.8 1 2 5.4e-06 0.00039 12.8 0.0 3 25 34 60 32 96 0.67 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 3_4 - 306 AAA_21 PF13304.1 303 4.8e-13 42.1 6.8 2 2 8.5e-12 6.2e-10 31.9 2.0 220 297 118 191 62 197 0.71 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 2_5 - 640 Miro PF08477.8 119 2.2e-06 20.6 0.0 1 1 6.9e-08 5e-06 19.5 0.0 7 119 11 131 5 131 0.86 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 1_7 - 319 ArsA_ATPase PF02374.10 305 0.0002 12.9 0.1 1 1 5.4e-06 0.00039 11.9 0.1 6 61 11 75 6 96 0.69 # 5471 # 6427 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 4_3 - 246 CMAS PF02353.15 273 0.00012 13.6 0.6 1 1 3e-06 0.00022 12.8 0.0 51 105 18 71 12 99 0.78 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 3_4 - 306 Zeta_toxin PF06414.7 201 8e-05 14.2 0.0 1 1 2e-06 0.00014 13.4 0.0 21 61 35 76 24 118 0.75 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 1_7 - 319 Fer4_NifH PF00142.13 273 2.6e-05 15.9 0.1 1 1 5.6e-07 4.1e-05 15.3 0.1 7 53 13 63 7 100 0.73 # 5471 # 6427 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 1_35 - 675 AAA_16 PF13191.1 185 0.00061 12.2 0.1 1 1 3e-05 0.0022 10.4 0.0 23 51 266 294 257 310 0.81 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 675 AAA_23 PF13476.1 202 0.0022 10.8 7.2 1 2 0.0035 0.26 4.0 0.7 153 201 102 181 3 185 0.61 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 675 AAA_23 PF13476.1 202 0.0022 10.8 7.2 2 2 0.00012 0.0086 8.8 0.9 22 144 270 446 267 572 0.48 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 675 AAA_18 PF13238.1 129 0.00048 12.9 2.4 1 1 1.7e-05 0.0012 11.6 0.0 3 23 272 301 271 355 0.76 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_7 - 319 CbiA PF01656.18 195 1.3e-22 72.6 0.1 1 1 2.4e-24 1.7e-22 72.2 0.1 1 192 8 244 8 247 0.71 # 5471 # 6427 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 1_35 - 675 AAA_14 PF13173.1 128 7.5e-05 15.1 1.7 1 2 0.00021 0.015 7.6 0.0 5 28 270 299 267 434 0.68 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 675 AAA_14 PF13173.1 128 7.5e-05 15.1 1.7 2 2 0.0013 0.098 5.0 0.1 50 102 527 587 466 605 0.70 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 2_5 - 640 TIGR03594 TIGR03594 432 1.6e-10 32.6 0.4 1 3 0.032 2.4 -0.9 0.0 176 211 4 42 2 45 0.74 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 2_5 - 640 TIGR03594 TIGR03594 432 1.6e-10 32.6 0.4 2 3 5.4e-10 4e-08 24.8 0.1 22 124 42 136 39 154 0.87 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 2_5 - 640 TIGR03594 TIGR03594 432 1.6e-10 32.6 0.4 3 3 0.00062 0.045 4.8 0.0 307 354 199 246 177 268 0.75 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 1_35 - 675 AAA_29 PF13555.1 62 1.8e-05 16.7 0.1 1 1 1.3e-06 4.9e-05 15.3 0.1 9 40 256 284 254 291 0.81 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 3_4 - 306 AAA_29 PF13555.1 62 0.00025 13.0 0.1 1 1 1.2e-05 0.00045 12.2 0.1 21 51 28 58 18 64 0.80 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 4_3 - 246 PCMT PF01135.14 210 5.6e-07 21.7 0.0 1 1 1.6e-08 1.2e-06 20.7 0.0 58 122 14 75 2 87 0.83 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_5 - 640 MMR_HSR1 PF01926.18 116 2.1e-08 26.6 0.1 1 1 6.9e-10 5.1e-08 25.4 0.1 3 116 7 129 5 129 0.65 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 1_30 - 872 TraG-D_C PF12696.2 128 1.1e-32 105.1 3.9 1 2 0.092 6.7 -0.9 0.1 43 88 375 421 371 425 0.74 # 23830 # 26445 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_30 - 872 TraG-D_C PF12696.2 128 1.1e-32 105.1 3.9 2 2 1.6e-34 1.2e-32 105.0 0.1 1 126 594 711 594 713 0.89 # 23830 # 26445 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_7 - 319 AAA_31 PF13614.1 157 3.2e-06 19.6 0.4 1 1 6.1e-07 4.4e-05 15.9 0.4 10 153 15 174 13 176 0.73 # 5471 # 6427 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.312 4_3 - 246 Methyltransf_26 PF13659.1 117 3.2e-09 29.3 0.0 1 1 7.4e-11 5.4e-09 28.6 0.0 2 83 31 106 30 200 0.81 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_35 - 675 AAA_30 PF13604.1 196 0.00045 12.3 0.0 1 1 1.4e-05 0.001 11.1 0.0 22 51 271 300 262 315 0.88 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 3_4 - 306 FtsK_SpoIIIE PF01580.13 205 0.00023 13.1 0.0 1 1 1.1e-05 0.0004 12.3 0.0 44 95 36 85 34 105 0.83 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 1_35 - 675 FtsK_SpoIIIE PF01580.13 205 0.00098 11.1 2.0 1 2 0.015 0.56 2.1 0.2 97 156 98 158 81 209 0.68 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 675 FtsK_SpoIIIE PF01580.13 205 0.00098 11.1 2.0 2 2 0.00028 0.01 7.8 0.1 23 60 246 289 233 294 0.69 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 4_3 - 246 MTS PF05175.9 170 4.5e-08 25.1 0.0 1 1 1e-09 7.4e-08 24.4 0.0 24 118 22 113 9 121 0.85 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_35 - 675 Dynamin_N PF00350.18 168 0.011 8.0 4.8 1 2 0.019 1.4 1.2 0.2 29 75 88 146 65 185 0.60 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 675 Dynamin_N PF00350.18 168 0.011 8.0 4.8 2 2 0.00029 0.021 7.1 0.0 3 22 272 291 271 296 0.87 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 3_4 - 306 ABC_tran PF00005.22 137 2.2e-30 98.2 0.1 1 1 1.5e-31 5.6e-30 96.9 0.0 2 137 21 161 20 161 0.96 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 1_35 - 675 ABC_tran PF00005.22 137 1e-05 18.3 1.0 1 1 1e-06 3.8e-05 16.5 0.2 7 35 263 291 259 467 0.89 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 675 AAA_10 PF12846.2 304 9.1e-59 191.7 2.7 1 2 0.083 3 -0.4 0.0 102 127 105 151 22 210 0.64 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_35 - 675 AAA_10 PF12846.2 304 9.1e-59 191.7 2.7 2 2 2.5e-60 9.1e-59 191.7 0.7 2 302 268 629 267 631 0.92 # 29967 # 31991 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 3_4 - 306 AAA_10 PF12846.2 304 0.00037 12.4 0.1 1 1 2.3e-05 0.00083 11.3 0.1 6 35 35 64 32 89 0.88 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 4_3 - 246 NodS PF05401.6 201 1.9e-08 26.4 0.0 1 1 4.2e-10 3.1e-08 25.7 0.0 41 120 27 106 7 116 0.86 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 4_3 - 246 Methyltransf_31 PF13847.1 152 7.9e-08 24.5 0.1 1 1 3.6e-09 1.3e-07 23.8 0.0 2 76 28 97 27 185 0.88 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 5_1 - 227 Methyltransf_31 PF13847.1 152 0.00014 14.0 0.6 1 1 9.1e-06 0.00033 12.7 0.1 85 127 130 178 99 207 0.80 # 54 # 734 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.383 4_3 - 246 TRM13 PF05206.9 259 9.4e-05 14.2 0.1 1 1 2.1e-06 0.00015 13.5 0.1 4 67 15 78 12 101 0.79 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_5 - 640 GTP_EFTU_D2 PF03144.20 74 2.6e-08 26.4 0.0 1 1 7.5e-10 5.4e-08 25.4 0.0 2 60 264 316 263 320 0.91 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 4_3 - 246 DOT1 PF08123.8 205 2.3e-05 16.2 0.2 1 2 8.2e-07 6e-05 14.9 0.0 28 88 15 73 11 100 0.79 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 4_3 - 246 DOT1 PF08123.8 205 2.3e-05 16.2 0.2 2 2 0.099 7.2 -1.7 0.1 83 119 184 220 168 231 0.51 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_5 - 640 PduV-EutP PF10662.4 143 2e-05 16.6 1.5 1 2 0.0017 0.13 4.3 0.3 7 7 33 33 1 101 0.56 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 2_5 - 640 PduV-EutP PF10662.4 143 2e-05 16.6 1.5 2 2 0.00066 0.048 5.6 0.0 105 135 106 136 95 143 0.81 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 1_30 - 872 TrwB_AAD_bind PF10412.4 386 2.1e-17 55.2 0.1 1 2 0.0072 0.52 1.2 0.1 14 130 188 323 181 342 0.58 # 23830 # 26445 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_30 - 872 TrwB_AAD_bind PF10412.4 386 2.1e-17 55.2 0.1 2 2 5.5e-18 4.1e-16 51.0 0.0 228 362 578 708 541 725 0.76 # 23830 # 26445 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_30 - 872 T4SS-DNA_transf PF02534.9 469 1.6e-32 105.1 1.1 1 2 2.2e-14 1.6e-12 39.1 0.0 43 254 188 419 157 426 0.67 # 23830 # 26445 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_30 - 872 T4SS-DNA_transf PF02534.9 469 1.6e-32 105.1 1.1 2 2 5.1e-22 3.7e-20 64.3 0.3 260 433 549 720 523 745 0.83 # 23830 # 26445 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 4_3 - 246 TIGR00755 TIGR00755 256 5.9e-45 145.6 3.1 1 1 9.8e-47 7.2e-45 145.4 3.1 5 227 5 221 1 235 0.88 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 4_3 - 246 Methyltransf_23 PF13489.1 161 7.3e-07 21.5 0.0 1 1 2.9e-08 2.1e-06 20.0 0.0 7 60 16 85 9 225 0.82 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_5 - 640 GTP_EFTU PF00009.22 188 9.7e-61 196.9 0.3 1 1 2e-62 1.5e-60 196.3 0.3 2 186 2 238 1 240 0.92 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 1_37 - 215 RNA_pol_Rpb1_1 PF04997.7 337 0.0014 10.3 9.2 1 1 2.7e-05 0.002 9.8 9.2 90 206 11 129 6 140 0.60 # 33206 # 33850 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=15bp;gc_cont=0.374 2_5 - 640 EFG_IV PF03764.13 120 7.2e-27 85.8 0.0 1 1 1.9e-28 1.4e-26 84.9 0.0 1 120 416 532 416 532 0.98 # 3230 # 5149 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.369 1_54 - 162 tRNA_anti-codon PF01336.20 75 5.4e-07 21.9 0.1 1 1 1.2e-08 8.7e-07 21.3 0.1 27 72 47 95 5 103 0.79 # 50274 # 50759 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 3_4 - 306 AAA_25 PF13481.1 194 0.00057 11.8 0.7 1 2 4.3e-05 0.0031 9.4 0.1 29 59 26 59 11 79 0.69 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 3_4 - 306 AAA_25 PF13481.1 194 0.00057 11.8 0.7 2 2 0.045 3.3 -0.5 0.0 141 189 149 192 109 195 0.65 # 1406 # 2323 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 4_3 - 246 Methyltransf_4 PF02390.12 197 0.0001 13.8 0.1 1 1 2.7e-06 0.0002 12.9 0.0 17 52 27 62 3 102 0.72 # 1054 # 1791 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/902cdad0-dc67-4f84-9bc7-7722f13e05e6 # Target file: checkm_output/bins/pGCA_001641305.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001641305.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/902cdad0-dc67-4f84-9bc7-7722f13e05e6 checkm_output/bins/pGCA_001641305.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:55 2020 # [ok]