# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 1025 TIGR00392 TIGR00392 861 3.5e-288 949.9 16.5 1 1 9.5e-290 4.6e-288 949.5 16.5 10 857 7 825 1 828 0.97 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_24 - 128 SSB PF00436.20 104 2.1e-25 80.5 0.1 1 1 5.5e-27 2.6e-25 80.2 0.1 1 87 2 82 2 94 0.93 # 17747 # 18130 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_15 - 671 DUF87 PF01935.12 229 1.7e-11 36.2 5.2 1 2 0.0099 0.47 2.0 0.7 121 191 103 185 70 198 0.67 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 DUF87 PF01935.12 229 1.7e-11 36.2 5.2 2 2 3.6e-13 1.7e-11 36.2 5.2 19 209 253 454 237 484 0.69 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_22 PF13401.1 131 5.4e-05 15.2 0.0 1 2 1.8e-05 0.00085 11.4 0.0 7 32 260 285 254 398 0.82 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_22 PF13401.1 131 5.4e-05 15.2 0.0 2 2 0.065 3.1 -0.2 0.0 81 101 493 516 470 554 0.76 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 2_1 - 167 Methyltransf_11 PF08241.7 95 7.3e-05 15.2 0.0 1 1 2.8e-06 0.00013 14.3 0.0 55 95 18 60 3 60 0.83 # 192 # 692 # 1 # ID=2_1;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.230 5_1 - 225 AAA_17 PF13207.1 121 2.1e-06 20.5 1.0 1 1 1.3e-07 3.1e-06 19.9 1.0 23 113 24 122 21 204 0.85 # 57 # 731 # 1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_15 - 671 AAA_17 PF13207.1 121 0.0015 11.3 2.5 1 1 0.00023 0.0055 9.4 0.1 4 15 262 273 260 277 0.93 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_16 PF13191.1 185 0.0001 14.2 0.0 1 1 1.8e-05 0.00088 11.1 0.0 25 52 258 295 244 532 0.65 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_18 PF13238.1 129 0.0039 9.4 5.6 1 2 8.3e-05 0.004 9.4 1.3 2 89 261 396 261 404 0.54 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_18 PF13238.1 129 0.0039 9.4 5.6 2 2 0.052 2.5 0.3 0.0 43 89 402 451 383 468 0.61 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_14 PF13173.1 128 0.0029 9.4 12.2 1 3 0.00026 0.012 7.4 2.1 2 40 257 294 256 460 0.83 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_14 PF13173.1 128 0.0029 9.4 12.2 2 3 0.0032 0.15 3.8 1.0 16 91 450 531 445 554 0.67 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 AAA_14 PF13173.1 128 0.0029 9.4 12.2 3 3 0.019 0.89 1.4 0.1 28 64 608 644 592 658 0.74 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 2_2 - 1025 tRNA-synt_1 PF00133.17 601 1.3e-242 797.9 4.6 1 1 4.6e-244 2.2e-242 797.1 4.6 2 601 12 625 11 625 0.99 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 1 4 3.1e-12 1.5e-10 32.1 0.2 10 135 44 188 41 199 0.75 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 2 4 0.03 1.4 -0.8 0.0 47 118 303 374 299 379 0.90 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 3 4 2.1e-05 0.00099 9.6 0.2 164 238 377 450 364 461 0.80 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1g PF09334.6 391 1.1e-25 81.9 7.9 4 4 1e-14 4.8e-13 40.3 0.3 244 387 508 644 497 646 0.75 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_15 - 671 AAA_29 PF13555.1 62 2.3e-05 15.8 0.2 1 1 1.8e-06 8.4e-05 14.0 0.1 19 39 256 273 243 278 0.81 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 2_2 - 1025 tRNA-synt_1_2 PF13603.1 185 6.5e-05 14.1 0.0 1 1 4.4e-06 0.00021 12.5 0.0 103 144 297 338 199 368 0.71 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_15 - 671 DUF258 PF03193.11 161 2.5e-05 15.3 1.3 1 2 0.028 1.3 0.0 0.1 70 119 205 254 194 259 0.81 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 DUF258 PF03193.11 161 2.5e-05 15.3 1.3 2 2 1.7e-06 8.4e-05 13.7 0.6 32 57 255 279 232 357 0.72 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_22 - 549 TraG-D_C PF12696.2 128 7.3e-38 121.2 0.1 1 1 1.5e-39 7.3e-38 121.2 0.1 1 127 289 413 289 414 0.90 # 15089 # 16735 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.305 1_15 - 671 FtsK_SpoIIIE PF01580.13 205 9.8e-05 13.7 0.0 1 1 4.1e-06 0.0002 12.7 0.0 35 78 249 293 229 300 0.79 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 2_2 - 1025 tRNA-synt_1f PF01921.13 360 8.8e-09 26.3 0.0 1 2 0.013 0.64 0.4 0.0 8 59 18 70 14 82 0.79 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1f PF01921.13 360 8.8e-09 26.3 0.0 2 2 2.2e-09 1e-07 22.7 0.0 273 335 576 638 539 668 0.72 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_15 - 671 ABC_tran PF00005.22 137 0.00017 13.8 3.1 1 1 2e-05 0.00095 11.4 2.2 12 51 258 299 250 394 0.56 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 2_2 - 1025 tRNA-synt_1e PF01406.14 301 8.9e-08 23.4 0.0 1 2 0.019 0.92 0.3 0.0 9 48 34 73 27 75 0.83 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_2 - 1025 tRNA-synt_1e PF01406.14 301 8.9e-08 23.4 0.0 2 2 2.7e-08 1.3e-06 19.5 0.0 242 299 573 632 556 634 0.75 # 719 # 3793 # 1 # ID=2_2;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_15 - 671 AAA_10 PF12846.2 304 9.6e-57 184.5 2.6 1 1 7.6e-58 1.8e-56 183.6 2.6 1 301 257 584 257 586 0.91 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_22 - 549 AAA_10 PF12846.2 304 7.5e-10 30.5 0.1 1 1 7.7e-11 1.9e-09 29.2 0.1 1 300 31 368 31 371 0.72 # 15089 # 16735 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.305 1_22 - 549 TrwB_AAD_bind PF10412.4 386 3.8e-24 76.8 4.5 1 2 1.5e-05 0.00035 11.1 0.0 12 121 28 144 23 169 0.80 # 15089 # 16735 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.305 1_22 - 549 TrwB_AAD_bind PF10412.4 386 3.8e-24 76.8 4.5 2 2 1.4e-22 3.3e-21 67.1 0.0 219 377 260 424 228 431 0.86 # 15089 # 16735 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.305 1_15 - 671 TrwB_AAD_bind PF10412.4 386 2.8e-09 27.8 1.5 1 2 9e-07 2.2e-05 15.0 0.0 10 61 252 305 244 370 0.81 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_15 - 671 TrwB_AAD_bind PF10412.4 386 2.8e-09 27.8 1.5 2 2 1.7e-05 0.00041 10.8 0.0 237 316 495 577 480 603 0.75 # 7604 # 9616 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.288 1_24 - 128 tRNA_anti_2 PF13742.1 99 0.00028 12.6 0.0 1 1 7.6e-06 0.00036 12.3 0.0 39 87 25 79 9 88 0.78 # 17747 # 18130 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_22 - 549 T4SS-DNA_transf PF02534.9 469 3.8e-148 485.7 3.0 1 1 8e-150 3.8e-148 485.7 3.0 3 468 3 462 1 463 0.97 # 15089 # 16735 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.305 1_20 - 701 TIGR00615 TIGR00615 196 1.1e-06 19.8 0.1 1 1 5.8e-08 2.8e-06 18.5 0.1 123 171 89 138 80 156 0.86 # 12510 # 14612 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.277 2_1 - 167 Methyltransf_23 PF13489.1 161 3.2e-05 15.6 0.0 1 1 7.5e-07 3.6e-05 15.4 0.0 71 120 16 67 4 131 0.82 # 192 # 692 # 1 # ID=2_1;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.230 1_24 - 128 tRNA_anti-codon PF01336.20 75 1.4e-05 16.8 0.1 1 1 4.2e-07 2e-05 16.3 0.1 23 65 39 81 16 99 0.86 # 17747 # 18130 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/82e22ccc-146d-4069-a2ed-6302c1d19630 # Target file: checkm_output/bins/pGCA_001641045.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001641045.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/82e22ccc-146d-4069-a2ed-6302c1d19630 checkm_output/bins/pGCA_001641045.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:54 2020 # [ok]