# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_4 - 193 RuvB_C PF05491.8 76 0.00031 12.2 0.4 1 2 0.038 1.7 0.2 0.1 55 67 121 133 117 139 0.82 # 3238 # 3816 # 1 # ID=4_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 4_4 - 193 RuvB_C PF05491.8 76 0.00031 12.2 0.4 2 2 8.6e-05 0.0038 8.7 0.0 6 43 145 178 142 182 0.86 # 3238 # 3816 # 1 # ID=4_4;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 2_7 - 548 3HCDH_N PF02737.13 180 1.1e-05 17.0 0.1 1 1 2.4e-07 1.1e-05 17.0 0.1 2 85 253 339 252 341 0.81 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 GIDA PF01134.17 392 1.7e-06 18.8 5.2 1 3 3.9e-08 1.7e-06 18.8 5.2 1 150 87 222 87 255 0.69 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 GIDA PF01134.17 392 1.7e-06 18.8 5.2 2 3 0.012 0.51 0.8 0.8 98 170 294 369 285 385 0.57 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 GIDA PF01134.17 392 1.7e-06 18.8 5.2 3 3 0.019 0.85 0.0 0.1 346 384 371 410 366 417 0.67 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 Pyr_redox_2 PF07992.9 201 1.5e-41 134.2 0.0 1 1 1.7e-42 3.6e-41 133.0 0.0 1 197 87 390 87 394 0.93 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_2 - 141 Pyr_redox_2 PF07992.9 201 4.5e-08 24.9 0.0 1 1 3.4e-09 7.4e-08 24.2 0.0 152 198 14 66 3 68 0.78 # 290 # 712 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.421 2_7 - 548 Usp PF00582.21 140 0.00036 12.5 0.1 1 1 2.3e-05 0.001 11.0 0.1 69 112 36 95 18 111 0.72 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 NAD_binding_7 PF13241.1 103 4e-05 15.6 0.1 1 2 0.00053 0.023 6.7 0.0 10 38 88 116 84 177 0.90 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 NAD_binding_7 PF13241.1 103 4e-05 15.6 0.1 2 2 0.00075 0.033 6.3 0.0 8 45 251 307 244 360 0.56 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 6_1 - 227 AAA_17 PF13207.1 121 2e-06 20.4 1.0 1 1 1.2e-07 5.2e-06 19.1 1.0 23 111 26 122 21 135 0.84 # 3 # 683 # 1 # ID=6_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 2_7 - 548 HI0933_like PF03486.9 409 8.3e-09 26.0 4.6 1 3 3.4e-06 0.00015 12.0 1.4 1 34 86 119 86 127 0.89 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 HI0933_like PF03486.9 409 8.3e-09 26.0 4.6 2 3 0.052 2.3 -1.8 0.0 144 165 203 223 195 230 0.80 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 HI0933_like PF03486.9 409 8.3e-09 26.0 4.6 3 3 9.3e-07 4.1e-05 13.9 0.0 75 165 258 349 239 354 0.82 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 FAD_binding_2 PF00890.19 417 3.8e-09 27.5 7.0 1 3 4.8e-10 2.1e-08 25.1 2.7 1 36 87 121 87 128 0.91 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 FAD_binding_2 PF00890.19 417 3.8e-09 27.5 7.0 2 3 0.0019 0.085 3.3 0.1 141 204 291 351 251 366 0.76 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 FAD_binding_2 PF00890.19 417 3.8e-09 27.5 7.0 3 3 0.08 3.5 -2.0 0.0 374 402 360 390 356 397 0.77 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 Thi4 PF01946.12 230 0.00017 12.5 0.2 1 1 9.7e-06 0.00043 11.1 0.2 17 56 85 123 74 140 0.80 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 Pyr_redox_3 PF13738.1 203 2.2e-16 52.3 0.5 1 2 5.2e-13 2.3e-11 35.9 0.0 1 200 89 283 89 286 0.63 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 Pyr_redox_3 PF13738.1 203 2.2e-16 52.3 0.5 2 2 2e-06 8.6e-05 14.4 0.1 82 147 291 357 287 390 0.70 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 2-Hacid_dh_C PF02826.14 178 0.00029 11.7 0.3 1 3 0.077 3.4 -1.5 0.0 38 67 87 116 57 127 0.86 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 2-Hacid_dh_C PF02826.14 178 0.00029 11.7 0.3 2 3 4.5e-05 0.002 9.0 0.0 37 70 251 284 237 304 0.83 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 2-Hacid_dh_C PF02826.14 178 0.00029 11.7 0.3 3 3 0.065 2.9 -1.3 0.0 47 108 293 355 291 373 0.62 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 XdhC_C PF13478.1 136 8e-05 14.7 0.0 1 1 4.7e-06 0.00021 13.4 0.0 1 49 253 302 253 321 0.79 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 Lycopene_cycl PF05834.7 374 3.1e-05 14.7 1.0 1 2 0.00031 0.014 6.0 0.4 1 33 87 117 87 120 0.91 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 Lycopene_cycl PF05834.7 374 3.1e-05 14.7 1.0 2 2 0.00016 0.0069 7.0 0.0 64 143 273 351 268 372 0.81 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 K_oxygenase PF13434.1 341 3.3e-10 31.1 1.5 1 3 0.0086 0.38 1.3 0.0 3 25 86 108 85 118 0.82 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 K_oxygenase PF13434.1 341 3.3e-10 31.1 1.5 2 3 8.3e-09 3.6e-07 21.0 0.0 140 232 205 290 190 302 0.83 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 K_oxygenase PF13434.1 341 3.3e-10 31.1 1.5 3 3 0.00033 0.014 5.9 0.2 119 160 310 351 294 385 0.66 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 UDPG_MGDP_dh_N PF03721.9 185 4.7e-05 14.6 0.0 1 1 2.5e-06 0.00011 13.4 0.0 2 39 252 289 251 354 0.75 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 FAD_oxidored PF12831.2 428 1.3e-12 39.2 1.3 1 2 1.3e-09 5.6e-08 23.9 0.3 1 45 87 130 87 195 0.80 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 FAD_oxidored PF12831.2 428 1.3e-12 39.2 1.3 2 2 1.1e-06 5e-05 14.2 0.0 78 147 281 347 240 349 0.74 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 DAO PF01266.19 358 2.4e-08 24.9 0.7 1 2 1e-06 4.5e-05 14.1 0.1 1 35 87 121 87 223 0.79 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 DAO PF01266.19 358 2.4e-08 24.9 0.7 2 2 3.3e-05 0.0014 9.2 0.1 152 205 296 352 253 444 0.78 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 Pyr_redox PF00070.22 80 5.8e-25 79.4 2.2 1 2 7.3e-05 0.0032 9.7 0.5 2 31 88 117 87 119 0.95 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 2_7 - 548 Pyr_redox PF00070.22 80 5.8e-25 79.4 2.2 2 2 2.9e-23 1.3e-21 68.7 0.1 1 72 252 323 252 334 0.93 # 3339 # 4982 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3a3cdd84-cf28-468d-867e-4761397ca6e9 # Target file: checkm_output/bins/pGCA_001641025.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001641025.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3a3cdd84-cf28-468d-867e-4761397ca6e9 checkm_output/bins/pGCA_001641025.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:53 2020 # [ok]