# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 209 FeoB_N PF02421.13 156 7.5e-05 13.3 3.9 1 2 4.4e-05 0.0014 9.2 0.0 3 24 30 51 28 56 0.89 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 FeoB_N PF02421.13 156 7.5e-05 13.3 3.9 2 2 0.0016 0.049 4.2 0.9 86 131 162 207 131 208 0.77 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_5 - 324 NmrA PF05368.8 233 2.8e-06 17.9 0.7 1 1 2.1e-07 6.4e-06 16.8 0.7 1 52 152 205 152 275 0.90 # 3646 # 4617 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_12 - 253 AAA_22 PF13401.1 131 8.3e-13 39.9 0.2 1 1 2.5e-13 3.9e-12 37.7 0.2 2 59 25 99 24 152 0.75 # 11029 # 11787 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_19 - 209 AAA_22 PF13401.1 131 4e-06 18.3 1.8 1 1 1e-06 1.6e-05 16.3 1.8 4 129 27 195 24 197 0.69 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_15 PF13175.1 415 9.5e-09 25.9 8.9 1 2 6.1e-06 0.00019 11.7 7.1 8 111 12 107 4 127 0.62 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_15 PF13175.1 415 9.5e-09 25.9 8.9 2 2 9e-07 2.8e-05 14.5 2.9 291 414 87 193 63 194 0.69 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_17 PF13207.1 121 1.4e-05 17.2 0.3 1 1 1.3e-06 4e-05 15.7 0.3 3 49 31 74 30 207 0.74 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_21 PF13304.1 303 4.5e-17 54.1 4.6 1 2 1.1e-09 3.6e-08 24.9 2.0 3 96 31 122 29 128 0.90 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_21 PF13304.1 303 4.5e-17 54.1 4.6 2 2 8.4e-12 2.6e-10 31.9 0.2 226 301 121 193 101 195 0.77 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_5 - 324 ADH_zinc_N PF00107.21 130 5e-17 52.9 0.0 1 1 3.7e-18 1.2e-16 51.8 0.0 1 117 160 270 160 285 0.90 # 3646 # 4617 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_19 - 209 Zeta_toxin PF06414.7 201 4.5e-05 13.8 0.0 1 1 2.1e-06 6.5e-05 13.3 0.0 14 61 25 73 15 95 0.83 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 SMC_N PF02463.14 220 1.2e-07 22.4 6.1 1 1 2e-08 6.3e-07 20.0 6.1 19 213 21 205 4 208 0.74 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_16 PF13191.1 185 5.9e-05 14.3 0.4 1 1 3.1e-06 9.8e-05 13.6 0.4 24 42 27 45 17 199 0.85 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_23 PF13476.1 202 6.7e-05 14.5 8.8 1 1 1e-05 0.00031 12.3 8.8 10 131 17 138 10 196 0.60 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_18 PF13238.1 129 0.00068 11.2 5.1 1 1 0.00012 0.0038 8.8 5.1 3 64 32 120 31 203 0.62 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_13 PF13166.1 712 8.9e-08 22.2 2.4 1 2 0.00015 0.0048 6.5 0.6 23 58 34 63 13 122 0.67 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_13 PF13166.1 712 8.9e-08 22.2 2.4 2 2 2.5e-07 7.6e-06 15.8 0.2 499 578 130 198 96 205 0.82 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 AAA_29 PF13555.1 62 1.1e-07 22.6 0.1 1 1 6.5e-09 2e-07 21.8 0.1 13 40 18 44 12 48 0.84 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 MMR_HSR1 PF01926.18 116 4.5e-06 17.9 3.2 1 1 3.3e-07 1e-05 16.8 3.2 3 100 31 142 29 204 0.62 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 DUF258 PF03193.11 161 2e-09 28.1 0.1 1 1 1e-10 3.2e-09 27.4 0.1 13 67 4 59 1 70 0.87 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 NTPase_1 PF03266.10 168 8e-05 13.6 0.4 1 2 0.0012 0.037 5.0 0.0 3 19 31 47 29 57 0.86 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 NTPase_1 PF03266.10 168 8e-05 13.6 0.4 2 2 0.00029 0.0089 7.0 0.2 74 136 128 192 104 207 0.74 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 Dynamin_N PF00350.18 168 8.3e-05 13.7 2.5 1 1 7.7e-06 0.00024 12.2 2.5 2 29 31 58 31 196 0.70 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 ABC_tran PF00005.22 137 3.2e-37 119.1 0.1 1 1 1.4e-38 4.4e-37 118.7 0.1 1 136 17 159 17 160 0.93 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_12 - 253 RuvB_N PF05496.7 234 9.4e-05 12.7 0.2 1 2 0.023 0.71 0.0 0.0 55 65 32 42 28 51 0.86 # 11029 # 11787 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_12 - 253 RuvB_N PF05496.7 234 9.4e-05 12.7 0.2 2 2 1.9e-05 0.0006 10.1 0.1 79 136 86 145 66 178 0.89 # 11029 # 11787 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_5 - 324 NAD_binding_10 PF13460.1 183 2.6e-05 15.5 0.1 1 1 1.2e-06 3.7e-05 15.0 0.1 1 38 152 192 152 240 0.88 # 3646 # 4617 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_19 - 209 AAA_10 PF12846.2 304 4.7e-05 14.1 0.0 1 1 2.5e-06 7.8e-05 13.4 0.0 3 22 29 48 27 77 0.84 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_19 - 209 SbcCD_C PF13558.1 90 7.1e-06 17.2 0.0 1 1 3e-06 9.4e-05 13.6 0.0 11 88 110 174 102 176 0.81 # 16873 # 17499 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_5 - 324 Epimerase PF01370.16 236 0.00011 12.9 0.0 1 1 5.3e-06 0.00017 12.3 0.0 1 39 152 191 152 216 0.80 # 3646 # 4617 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_5 - 324 DapB_N PF01113.15 124 1.5e-06 19.4 0.2 1 2 0.042 1.3 0.2 0.0 92 103 121 132 115 142 0.84 # 3646 # 4617 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 1_5 - 324 DapB_N PF01113.15 124 1.5e-06 19.4 0.2 2 2 5.1e-07 1.6e-05 16.1 0.2 3 97 152 242 150 250 0.78 # 3646 # 4617 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.315 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e2061d44-8744-4418-a0c9-6cc2c6e1e01f # Target file: checkm_output/bins/pGCA_001640925.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001640925.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e2061d44-8744-4418-a0c9-6cc2c6e1e01f checkm_output/bins/pGCA_001640925.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:51 2020 # [ok]