# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_34 - 226 NmrA PF05368.8 233 1.6e-06 19.0 0.7 1 1 1.1e-07 3.9e-06 17.7 0.6 1 52 54 107 54 166 0.89 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_6 - 253 AAA_22 PF13401.1 131 9.7e-13 39.9 0.2 1 1 1.2e-13 4.5e-12 37.7 0.2 2 59 25 99 24 152 0.75 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_19 - 131 AAA_15 PF13175.1 415 2.1e-06 18.4 1.0 1 1 1e-07 3.7e-06 17.6 1.0 291 414 9 115 2 116 0.68 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_19 - 131 AAA_21 PF13304.1 303 1.1e-11 36.6 0.3 1 1 3.3e-13 1.2e-11 36.5 0.3 195 301 19 115 1 117 0.69 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_34 - 226 ADH_zinc_N PF00107.21 130 3.7e-17 53.6 0.0 1 1 1.6e-18 5.7e-17 53.0 0.0 1 117 62 172 62 187 0.90 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_19 - 131 SMC_N PF02463.14 220 2.1e-07 21.8 0.9 1 1 6.8e-09 2.4e-07 21.6 0.9 123 213 34 127 4 130 0.69 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_19 - 131 AAA_13 PF13166.1 712 1.8e-06 18.0 0.2 1 1 7.1e-08 2.6e-06 17.6 0.2 499 578 52 120 11 127 0.81 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_19 - 131 ABC_tran PF00005.22 137 1.1e-16 52.9 0.1 1 1 4.6e-18 1.7e-16 52.3 0.1 65 136 2 81 1 82 0.86 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_6 - 253 RuvB_N PF05496.7 234 0.00011 12.7 0.2 1 2 0.023 0.83 0.0 0.0 55 65 32 42 28 51 0.86 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_6 - 253 RuvB_N PF05496.7 234 0.00011 12.7 0.2 2 2 1.9e-05 0.0007 10.1 0.1 79 136 86 145 66 178 0.89 # 5584 # 6342 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_34 - 226 NAD_binding_10 PF13460.1 183 1.8e-05 16.3 0.1 1 1 6.1e-07 2.2e-05 16.0 0.1 1 38 54 94 54 146 0.87 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_19 - 131 SbcCD_C PF13558.1 90 2.2e-06 19.0 0.0 1 1 1e-06 3.6e-05 15.2 0.0 10 88 31 96 22 98 0.82 # 11677 # 12069 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.293 1_34 - 226 Epimerase PF01370.16 236 7.1e-05 13.7 0.0 1 1 3e-06 0.00011 13.2 0.0 1 39 54 93 54 119 0.80 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_34 - 226 DapB_N PF01113.15 124 9.1e-07 20.3 0.3 1 2 0.026 0.94 0.9 0.0 92 103 23 34 17 46 0.84 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 1_34 - 226 DapB_N PF01113.15 124 9.1e-07 20.3 0.3 2 2 2.4e-07 8.6e-06 17.2 0.2 3 97 54 144 52 152 0.78 # 22891 # 23568 # -1 # ID=1_34;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.311 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e3506186-2b5c-4d90-aee3-f5b473b06efc # Target file: checkm_output/bins/pGCA_001640905.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001640905.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e3506186-2b5c-4d90-aee3-f5b473b06efc checkm_output/bins/pGCA_001640905.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:50 2020 # [ok]