# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 341 Mg_chelatase PF01078.16 207 8.7e-06 16.9 0.0 1 1 2.8e-07 1.4e-05 16.3 0.0 14 51 157 194 149 249 0.85 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 cobW PF02492.14 178 0.00049 11.5 0.1 1 1 1.7e-05 0.00082 10.7 0.1 3 33 168 198 166 201 0.83 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 IstB_IS21 PF01695.12 178 3.5e-05 15.2 0.0 1 1 1.7e-06 8.4e-05 13.9 0.0 30 67 149 185 144 203 0.84 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 2_14 - 256 MipZ PF09140.6 261 7.8e-12 36.6 0.6 1 3 1.4e-08 7e-07 20.4 0.1 2 58 5 60 4 85 0.76 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_14 - 256 MipZ PF09140.6 261 7.8e-12 36.6 0.6 2 3 1.8e-06 9e-05 13.5 0.0 84 139 113 167 86 183 0.79 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_14 - 256 MipZ PF09140.6 261 7.8e-12 36.6 0.6 3 3 0.055 2.7 -1.2 0.0 36 71 189 224 180 234 0.70 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_14 - 256 YhjQ PF06564.7 244 1.6e-12 39.2 0.0 1 2 3.5e-05 0.0017 9.6 0.0 9 41 11 42 3 57 0.88 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_14 - 256 YhjQ PF06564.7 244 1.6e-12 39.2 0.0 2 2 1.3e-10 6.3e-09 27.4 0.0 96 233 107 251 84 254 0.74 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 1_12 - 341 DUF87 PF01935.12 229 9.3e-06 17.5 0.3 1 1 4.7e-07 2.3e-05 16.2 0.3 8 47 150 189 145 198 0.88 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 AAA_22 PF13401.1 131 9e-05 14.5 0.0 1 1 3.5e-06 0.00017 13.6 0.0 4 29 165 190 160 264 0.82 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 ATP_bind_1 PF03029.12 238 2.5e-05 15.8 0.1 1 1 8.8e-07 4.3e-05 15.0 0.1 1 23 170 192 170 198 0.87 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 PRK PF00485.13 194 0.00019 12.9 0.0 1 1 1.3e-05 0.00062 11.2 0.0 2 23 168 189 167 202 0.90 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 AAA_17 PF13207.1 121 3e-06 20.0 0.0 1 1 1.2e-07 6.1e-06 19.0 0.0 2 27 168 191 167 260 0.82 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 AAA_21 PF13304.1 303 4.7e-07 21.9 0.4 1 2 0.00021 0.01 7.6 0.2 89 151 106 168 97 171 0.89 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 AAA_21 PF13304.1 303 4.7e-07 21.9 0.4 2 2 6.3e-06 0.00031 12.6 0.0 3 22 169 188 167 213 0.68 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 Miro PF08477.8 119 9.3e-05 14.9 0.1 1 1 4.1e-06 0.0002 13.8 0.1 2 22 168 188 167 304 0.91 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 MobB PF03205.9 140 9.4e-05 14.0 0.0 1 1 5.6e-06 0.00028 12.5 0.0 3 35 168 199 166 203 0.80 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 2_14 - 256 ArsA_ATPase PF02374.10 305 1.6e-07 22.5 0.8 1 2 1.2e-08 5.9e-07 20.6 0.0 9 45 12 47 4 64 0.87 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_14 - 256 ArsA_ATPase PF02374.10 305 1.6e-07 22.5 0.8 2 2 0.033 1.6 -0.5 0.0 125 136 125 136 110 150 0.84 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 1_12 - 341 T2SE PF00437.15 272 9.6e-73 236.2 0.0 1 1 2.2e-74 1.1e-72 236.0 0.0 3 270 18 318 16 320 0.98 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 Zeta_toxin PF06414.7 201 5.4e-05 14.2 0.0 1 1 2.4e-06 0.00012 13.1 0.0 17 51 166 200 160 223 0.75 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 2_14 - 256 VirC1 PF07015.6 231 3.4e-07 21.4 1.4 1 2 1.2e-06 5.7e-05 14.1 0.1 2 35 4 36 3 49 0.82 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_14 - 256 VirC1 PF07015.6 231 3.4e-07 21.4 1.4 2 2 0.00026 0.013 6.4 0.1 83 152 126 192 114 220 0.75 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_14 - 256 Fer4_NifH PF00142.13 273 5.9e-09 27.3 0.9 1 2 2.8e-09 1.4e-07 22.9 0.0 7 50 11 53 5 78 0.78 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_14 - 256 Fer4_NifH PF00142.13 273 5.9e-09 27.3 0.9 2 2 0.0031 0.15 3.0 0.2 187 246 190 254 180 255 0.72 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_15 - 99 Ubiquitin_2 PF14560.1 87 1.8e-05 16.9 1.2 1 1 3.7e-07 1.8e-05 16.9 0.2 14 69 14 66 3 72 0.88 # 10783 # 11079 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_12 - 341 AAA_23 PF13476.1 202 9e-06 18.0 0.0 1 1 2.9e-07 1.4e-05 17.3 0.0 18 39 164 185 123 188 0.85 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 AAA_18 PF13238.1 129 3.9e-06 19.1 0.1 1 1 2.6e-07 6.4e-06 18.4 0.1 1 27 168 196 168 324 0.88 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 2_14 - 256 AAA_18 PF13238.1 129 0.00019 13.7 0.7 1 1 4.2e-05 0.001 11.3 0.1 8 42 14 52 13 139 0.75 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_14 - 256 CbiA PF01656.18 195 9.1e-40 128.0 0.2 1 1 4.5e-41 1.1e-39 127.7 0.2 1 194 6 224 6 225 0.84 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 1_4 - 231 CbiA PF01656.18 195 1.5e-07 22.9 1.7 1 1 2.4e-06 5.8e-05 14.4 1.7 1 158 3 132 3 164 0.61 # 1530 # 2222 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 341 AAA_29 PF13555.1 62 2.4e-06 19.0 0.0 1 1 1e-07 5.1e-06 17.9 0.0 23 47 165 189 158 196 0.84 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_19 - 59 MRP-L47 PF06984.8 87 3.3e-05 15.7 0.1 1 1 7e-07 3.5e-05 15.6 0.1 31 70 4 43 1 52 0.84 # 18985 # 19161 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.379 1_12 - 341 Sigma54_activat PF00158.21 168 0.00028 12.3 0.1 1 1 1.9e-05 0.00094 10.6 0.0 12 48 155 191 148 203 0.81 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 DUF258 PF03193.11 161 0.00037 11.6 0.0 1 1 1.4e-05 0.00069 10.7 0.0 22 57 153 187 132 220 0.80 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_11 - 635 TraG-D_C PF12696.2 128 5.5e-27 86.1 0.1 1 1 1.9e-28 9.1e-27 85.4 0.1 1 127 392 513 392 514 0.89 # 9644 # 11548 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 2_14 - 256 AAA_31 PF13614.1 157 1.9e-12 39.3 0.0 1 2 3e-10 1.5e-08 26.6 0.0 9 63 12 64 4 98 0.88 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 2_14 - 256 AAA_31 PF13614.1 157 1.9e-12 39.3 0.0 2 2 2.4e-05 0.0012 10.7 0.0 117 155 126 163 104 165 0.85 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 1_12 - 341 AAA_30 PF13604.1 196 6.9e-05 14.4 0.0 1 1 2.3e-06 0.00011 13.7 0.0 15 48 163 194 154 198 0.74 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 FtsK_SpoIIIE PF01580.13 205 2.4e-07 22.3 0.0 1 1 8.5e-09 4.2e-07 21.5 0.0 32 59 159 186 143 191 0.78 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 ABC_tran PF00005.22 137 7.8e-06 18.1 0.0 1 1 3.2e-07 1.6e-05 17.1 0.0 6 42 160 196 157 214 0.81 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 AAA_19 PF13245.1 76 0.00011 13.9 0.0 1 1 1e-05 0.00025 12.7 0.0 9 35 165 189 156 201 0.73 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 2_14 - 256 AAA_19 PF13245.1 76 0.00033 12.4 0.2 1 1 2.7e-05 0.00066 11.4 0.2 20 48 14 37 13 51 0.87 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 1_16 - 810 AAA_10 PF12846.2 304 1.1e-35 115.3 0.0 1 1 6.8e-37 1.7e-35 114.8 0.0 2 303 434 721 433 722 0.88 # 15590 # 18019 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.458 1_12 - 341 AAA_10 PF12846.2 304 1.5e-05 16.5 0.0 1 1 1.3e-06 3.2e-05 15.3 0.0 3 28 167 191 165 203 0.76 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 ResIII PF04851.10 184 0.00044 12.0 0.0 1 1 1.4e-05 0.00069 11.4 0.0 23 47 163 187 117 210 0.76 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 DEAD PF00270.24 169 8.7e-05 13.9 0.0 1 1 3e-06 0.00015 13.2 0.0 11 57 162 205 155 319 0.78 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_11 - 635 TrwB_AAD_bind PF10412.4 386 1e-21 68.8 0.0 1 1 4.7e-22 1.2e-20 65.4 0.0 45 377 161 524 137 529 0.74 # 9644 # 11548 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 341 TrwB_AAD_bind PF10412.4 386 3.8e-06 17.5 0.0 1 1 2.6e-07 6.4e-06 16.8 0.0 15 49 165 199 158 214 0.83 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_11 - 635 T4SS-DNA_transf PF02534.9 469 6.3e-95 310.2 0.0 1 1 1.8e-96 8.6e-95 309.8 0.0 44 459 127 547 87 555 0.86 # 9644 # 11548 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_12 - 341 Pox_A32 PF04665.7 241 1.3e-05 16.5 0.0 1 1 4.8e-07 2.3e-05 15.6 0.0 15 40 167 192 158 205 0.85 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 UPF0079 PF02367.12 123 0.00021 12.8 0.1 1 1 8.2e-06 0.0004 11.9 0.1 17 39 167 189 155 198 0.80 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 UvrD-helicase PF00580.16 315 0.00039 11.6 0.0 1 1 1.3e-05 0.00065 10.9 0.0 10 34 162 186 156 200 0.82 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 NACHT PF05729.7 166 1.7e-05 16.4 0.1 1 1 7e-07 3.4e-05 15.4 0.1 3 28 168 193 166 199 0.90 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 2_14 - 256 AAA_25 PF13481.1 194 0.00021 12.6 0.0 1 1 1.6e-05 0.0004 11.7 0.0 42 101 13 69 11 134 0.80 # 9995 # 10762 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.402 1_12 - 341 AAA_25 PF13481.1 194 0.00043 11.6 0.0 1 1 3.2e-05 0.0008 10.7 0.0 36 62 168 194 160 214 0.81 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 1_12 - 341 AAA_28 PF13521.1 163 1.7e-05 16.8 0.0 1 1 6.2e-07 3.1e-05 15.9 0.0 1 25 167 194 167 238 0.78 # 11675 # 12697 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.463 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2af94cb6-ec6a-462f-8990-88892427ce77 # Target file: checkm_output/bins/pGCA_001636035.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001636035.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2af94cb6-ec6a-462f-8990-88892427ce77 checkm_output/bins/pGCA_001636035.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:50 2020 # [ok]