# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 193 RuvB_C PF05491.8 76 7e-05 12.2 0.4 1 2 0.038 0.38 0.2 0.1 55 67 121 133 117 139 0.82 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_6 - 193 RuvB_C PF05491.8 76 7e-05 12.2 0.4 2 2 8.6e-05 0.00086 8.7 0.0 6 43 145 178 142 182 0.86 # 6102 # 6680 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_10 - 175 DUF87 PF01935.12 229 0.047 3.1 13.0 1 2 0.005 0.05 3.0 11.2 111 195 5 95 2 115 0.75 # 10276 # 10800 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.295 1_10 - 175 DUF87 PF01935.12 229 0.047 3.1 13.0 2 2 0.018 0.18 1.1 0.2 76 105 92 129 83 159 0.68 # 10276 # 10800 # -1 # ID=1_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.295 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ee5d2b9e-c476-41f1-8a2e-0c89b4a24d6f # Target file: checkm_output/bins/pGCA_001611955.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001611955.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ee5d2b9e-c476-41f1-8a2e-0c89b4a24d6f checkm_output/bins/pGCA_001611955.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:46 2020 # [ok]