# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 272 cobW PF02492.14 178 0.00017 11.7 0.2 1 1 2e-05 0.00038 10.5 0.1 126 171 102 156 63 162 0.72 # 11579 # 12394 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_4 - 209 FeoB_N PF02421.13 156 1e-05 15.4 3.7 1 2 4.3e-05 0.00082 9.2 0.0 3 24 30 51 28 57 0.89 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 FeoB_N PF02421.13 156 1e-05 15.4 3.7 2 2 0.00037 0.0071 6.2 1.3 85 131 161 207 129 208 0.78 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_13 - 272 AAA_22 PF13401.1 131 2.1e-28 89.6 0.0 1 1 3.9e-29 3.7e-28 88.9 0.0 2 131 25 171 24 171 0.87 # 11579 # 12394 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_4 - 209 AAA_22 PF13401.1 131 1.1e-06 19.4 1.0 1 1 3.5e-07 3.3e-06 17.9 1.0 4 122 27 188 24 197 0.70 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_15 PF13175.1 415 5.6e-09 26.0 9.2 1 2 7.5e-06 0.00014 11.4 5.9 8 91 12 87 4 110 0.60 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_15 PF13175.1 415 5.6e-09 26.0 9.2 2 2 5e-07 9.5e-06 15.3 3.3 285 411 82 190 62 194 0.67 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_17 PF13207.1 121 4.9e-06 18.0 0.3 1 1 8.2e-07 1.6e-05 16.4 0.3 3 58 31 88 30 207 0.73 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_21 PF13304.1 303 7.7e-17 52.6 5.3 1 1 3.3e-16 6.3e-15 46.4 5.3 3 301 31 193 29 195 0.94 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 Zeta_toxin PF06414.7 201 2.5e-05 14.0 0.0 1 1 1.9e-06 3.6e-05 13.5 0.0 14 62 25 74 15 97 0.82 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 SMC_N PF02463.14 220 6.4e-08 22.6 6.0 1 1 7.9e-09 1.5e-07 21.4 6.0 19 213 21 205 4 208 0.75 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_16 PF13191.1 185 3.7e-05 14.3 1.0 1 1 4.1e-06 7.8e-05 13.2 1.0 24 44 27 46 17 199 0.77 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_23 PF13476.1 202 0.00012 12.9 10.4 1 1 4e-05 0.00076 10.4 10.4 10 130 17 137 9 195 0.58 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_18 PF13238.1 129 0.00025 12.0 4.6 1 1 5.7e-05 0.0011 9.9 4.6 3 64 32 120 31 203 0.64 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_13 PF13166.1 712 9.3e-08 21.4 4.4 1 2 0.00018 0.0033 6.3 1.5 23 76 34 84 13 126 0.63 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_13 PF13166.1 712 9.3e-08 21.4 4.4 2 2 2.5e-07 4.8e-06 15.7 0.7 499 578 130 198 99 205 0.82 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 KaiC PF06745.8 227 4.9e-05 13.0 0.4 1 1 4e-06 7.6e-05 12.4 0.3 16 141 24 148 14 166 0.80 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_14 - 256 AAA_14 PF13173.1 128 0.0014 9.1 7.7 1 1 4.4e-06 8.4e-05 13.1 1.4 27 91 64 135 51 174 0.77 # 12483 # 13250 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.242 1_4 - 209 AAA_29 PF13555.1 62 6.8e-08 22.6 0.1 1 1 6.5e-09 1.2e-07 21.8 0.1 13 40 18 44 12 48 0.84 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_13 - 272 AAA PF00004.24 132 3.7e-06 17.8 1.0 1 1 6e-06 0.00011 12.9 1.0 3 110 32 166 31 189 0.65 # 11579 # 12394 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 1_4 - 209 MMR_HSR1 PF01926.18 116 2.8e-06 17.9 2.8 1 1 3e-07 5.7e-06 16.9 2.8 3 91 31 134 29 203 0.64 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 DUF258 PF03193.11 161 1.1e-09 28.2 0.1 1 1 1.1e-10 2e-09 27.4 0.1 13 67 4 59 1 69 0.87 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 NTPase_1 PF03266.10 168 6.2e-05 13.3 0.3 1 2 0.0012 0.023 5.0 0.0 3 19 31 47 29 57 0.86 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 NTPase_1 PF03266.10 168 6.2e-05 13.3 0.3 2 2 0.00037 0.0071 6.6 0.2 80 135 134 191 104 207 0.74 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 Dynamin_N PF00350.18 168 5e-05 13.7 2.6 1 1 7.1e-06 0.00014 12.3 2.6 2 35 31 64 31 196 0.64 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 ABC_tran PF00005.22 137 8.7e-37 117.1 0.1 1 1 6.2e-38 1.2e-36 116.6 0.1 1 136 17 159 17 160 0.93 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 AAA_10 PF12846.2 304 2.9e-05 14.1 0.2 1 1 2.6e-06 5e-05 13.3 0.1 3 22 29 48 27 78 0.84 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_4 - 209 SbcCD_C PF13558.1 90 1.1e-05 16.0 0.0 1 1 7.3e-06 0.00014 12.4 0.0 24 88 123 174 102 176 0.79 # 2594 # 3220 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.289 1_13 - 272 DEAD PF00270.24 169 0.00024 11.2 1.7 1 1 4.1e-05 0.00078 9.5 1.7 111 144 120 152 29 235 0.86 # 11579 # 12394 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.305 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/67b12300-fdbc-41b6-b1ff-a8b6d6277d9d # Target file: checkm_output/bins/pGCA_001611385.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001611385.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/67b12300-fdbc-41b6-b1ff-a8b6d6277d9d checkm_output/bins/pGCA_001611385.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:43 2020 # [ok]