# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_15 - 808 OmdA PF13376.1 63 0.0003 14.1 0.6 1 3 0.0047 0.78 3.1 0.1 29 57 43 71 39 74 0.85 # 13713 # 16136 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_15 - 808 OmdA PF13376.1 63 0.0003 14.1 0.6 2 3 0.00091 0.15 5.4 0.0 3 20 495 512 493 514 0.88 # 13713 # 16136 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 1_15 - 808 OmdA PF13376.1 63 0.0003 14.1 0.6 3 3 0.015 2.5 1.5 0.0 3 20 771 788 769 790 0.89 # 13713 # 16136 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.634 31_2 - 143 cobW PF02492.14 178 0.00049 13.2 0.0 1 1 8.1e-06 0.00067 12.7 0.0 4 28 16 39 14 57 0.78 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 10_7 - 381 cobW PF02492.14 178 0.0013 11.8 0.0 1 1 3.5e-05 0.0029 10.7 0.0 4 28 16 39 14 53 0.77 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 4_4 - 109 CoA_binding_2 PF13380.1 116 0.00039 14.2 0.1 1 1 2.7e-06 0.00045 14.0 0.1 54 106 33 92 8 100 0.77 # 1271 # 1597 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.664 18_3 - 191 Seryl_tRNA_N PF02403.17 108 0.00034 14.3 8.2 1 1 8.4e-06 0.0007 13.3 8.2 22 94 90 162 74 171 0.85 # 482 # 1054 # -1 # ID=18_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.613 27_1 - 212 Seryl_tRNA_N PF02403.17 108 0.071 6.8 9.8 1 1 0.0028 0.23 5.1 6.8 38 100 99 165 72 169 0.63 # 89 # 724 # -1 # ID=27_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 6_2 - 211 IstB_IS21 PF01695.12 178 0.00024 14.1 0.6 1 1 7.7e-06 0.0013 11.8 0.6 56 80 12 36 5 96 0.90 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 1_10 - 212 MipZ PF09140.6 261 1.3e-15 50.8 0.6 1 2 9.3e-12 3.1e-10 33.1 0.2 3 52 4 52 2 61 0.85 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 1_10 - 212 MipZ PF09140.6 261 1.3e-15 50.8 0.6 2 2 1.5e-06 4.9e-05 16.1 0.0 90 135 69 114 48 119 0.84 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 3_4 - 210 MipZ PF09140.6 261 1.7e-13 43.9 0.2 1 2 8.8e-09 2.9e-07 23.4 0.0 3 42 3 42 1 51 0.88 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 MipZ PF09140.6 261 1.7e-13 43.9 0.2 2 2 3e-07 9.9e-06 18.4 0.0 89 135 67 113 62 152 0.78 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 4_3 - 209 MipZ PF09140.6 261 5.7e-12 38.8 0.3 1 1 6.2e-11 2.1e-09 30.4 0.1 4 135 4 115 1 130 0.76 # 648 # 1274 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 6_2 - 211 MipZ PF09140.6 261 1.5e-09 30.9 1.5 1 2 1.5e-07 4.9e-06 19.4 0.3 2 46 4 48 3 57 0.89 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 6_2 - 211 MipZ PF09140.6 261 1.5e-09 30.9 1.5 2 2 0.0001 0.0034 10.1 0.0 89 130 70 111 50 121 0.79 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 16_4 - 341 MipZ PF09140.6 261 5.6e-06 19.2 0.0 1 2 0.0034 0.11 5.1 0.0 7 29 9 31 6 51 0.75 # 975 # 1997 # -1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 16_4 - 341 MipZ PF09140.6 261 5.6e-06 19.2 0.0 2 2 2.9e-05 0.00097 11.8 0.0 86 183 147 244 119 265 0.76 # 975 # 1997 # -1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_10 - 212 YhjQ PF06564.7 244 9.2e-10 31.9 0.2 1 2 2.2e-05 0.0012 11.8 0.3 1 41 1 41 1 46 0.92 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 1_10 - 212 YhjQ PF06564.7 244 9.2e-10 31.9 0.2 2 2 3.4e-07 1.9e-05 17.7 0.0 107 231 68 196 45 208 0.74 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 3_4 - 210 YhjQ PF06564.7 244 1.5e-09 31.2 0.6 1 2 5.4e-08 3e-06 20.4 0.1 4 41 3 40 1 44 0.91 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 YhjQ PF06564.7 244 1.5e-09 31.2 0.6 2 2 0.00016 0.0089 9.0 0.0 108 229 69 198 63 206 0.65 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 6_2 - 211 YhjQ PF06564.7 244 0.00045 13.2 0.2 1 2 0.0059 0.33 3.8 0.2 4 38 5 39 1 43 0.81 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 6_2 - 211 YhjQ PF06564.7 244 0.00045 13.2 0.2 2 2 0.00051 0.028 7.3 0.0 102 144 64 106 51 114 0.88 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 8_3 - 981 UvrD_C_2 PF13538.1 104 3.1e-11 37.0 0.2 1 1 1.3e-12 2.1e-10 34.3 0.0 3 103 812 917 810 918 0.74 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 31_2 - 143 DUF87 PF01935.12 229 0.00011 15.7 0.0 1 1 3.9e-06 0.00016 15.1 0.0 19 45 8 34 6 49 0.86 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 8_2 - 525 DUF87 PF01935.12 229 0.00015 15.3 0.0 1 1 5.3e-06 0.00022 14.7 0.0 24 74 141 188 132 307 0.80 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 20_1 - 364 DUF87 PF01935.12 229 0.00021 14.8 0.5 1 1 2.4e-05 0.001 12.5 0.1 19 45 331 357 328 361 0.91 # 1 # 1092 # 1 # ID=20_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.617 10_7 - 381 DUF87 PF01935.12 229 0.0004 13.9 0.0 1 1 1.7e-05 0.00071 13.0 0.0 19 45 8 34 6 48 0.86 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 31_2 - 143 AAA_22 PF13401.1 131 7.4e-06 19.8 0.0 1 1 3.3e-07 1.4e-05 18.9 0.0 4 107 12 119 7 136 0.68 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 10_7 - 381 AAA_22 PF13401.1 131 7.1e-05 16.6 0.0 1 1 9.1e-06 0.00038 14.2 0.0 4 49 12 52 7 128 0.64 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 6_2 - 211 AAA_22 PF13401.1 131 0.00079 13.2 0.0 1 1 4e-05 0.0017 12.2 0.0 14 94 13 86 5 103 0.65 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 8_3 - 981 AAA_22 PF13401.1 131 0.0046 10.7 4.7 1 1 0.0017 0.071 6.9 0.3 6 125 504 611 499 617 0.54 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 1_10 - 212 DUF1611 PF07755.6 301 2.6e-05 16.6 5.2 1 2 3.2e-06 0.00054 12.3 1.7 124 192 13 84 4 86 0.90 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 1_10 - 212 DUF1611 PF07755.6 301 2.6e-05 16.6 5.2 2 2 0.00027 0.045 5.9 0.1 185 228 98 143 87 180 0.70 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 4_3 - 209 SRP54 PF00448.17 196 1.5e-06 21.4 0.1 1 1 6.7e-08 2.8e-06 20.5 0.1 11 167 11 162 2 176 0.63 # 648 # 1274 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 1_10 - 212 SRP54 PF00448.17 196 5.2e-06 19.6 1.8 1 1 2.4e-07 9.8e-06 18.7 1.8 7 91 8 85 2 92 0.78 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 3_4 - 210 SRP54 PF00448.17 196 9.7e-05 15.5 0.0 1 1 3.8e-06 0.00016 14.8 0.0 10 40 10 40 1 90 0.80 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 6_2 - 211 SRP54 PF00448.17 196 0.00016 14.7 0.5 1 1 6.8e-06 0.00028 14.0 0.5 11 95 13 91 3 104 0.79 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 6_2 - 211 AAA_17 PF13207.1 121 5.1e-06 21.0 0.0 1 1 2.1e-07 1.2e-05 19.8 0.0 9 87 13 101 11 129 0.58 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 6_5 - 394 AAA_17 PF13207.1 121 4.1e-05 18.0 1.2 1 1 3.1e-06 0.00017 16.0 0.7 2 111 37 161 36 297 0.75 # 2646 # 3827 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 3_4 - 210 AAA_17 PF13207.1 121 0.00019 15.9 0.0 1 1 5e-06 0.00027 15.4 0.0 9 78 11 99 10 165 0.66 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 6_2 - 211 MobB PF03205.9 140 3.6e-07 23.6 0.0 1 1 1.7e-08 7.1e-07 22.6 0.0 2 113 4 100 3 121 0.73 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 1_10 - 212 MobB PF03205.9 140 0.00078 12.8 0.1 1 1 3.4e-05 0.0014 11.9 0.1 6 42 8 42 3 105 0.83 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 3_4 - 210 MobB PF03205.9 140 0.001 12.4 0.0 1 1 5.2e-05 0.0022 11.3 0.0 10 75 11 61 1 124 0.70 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 31_2 - 143 MobB PF03205.9 140 0.0011 12.3 0.0 1 1 4.5e-05 0.0018 11.6 0.0 4 40 16 51 14 58 0.81 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 1_10 - 212 LpxK PF02606.9 326 0.00056 12.5 0.5 1 1 8.2e-06 0.0014 11.2 0.2 44 69 9 34 7 46 0.93 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 3_4 - 210 ArsA_ATPase PF02374.10 305 2.3e-09 30.3 0.7 1 1 2.4e-10 1e-08 28.2 0.1 7 43 7 43 1 62 0.88 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 4_3 - 209 ArsA_ATPase PF02374.10 305 5.5e-08 25.8 0.2 1 1 2.3e-09 9.5e-08 25.0 0.2 5 42 5 41 1 48 0.86 # 648 # 1274 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 1_10 - 212 ArsA_ATPase PF02374.10 305 2.5e-06 20.3 1.6 1 2 9e-07 3.7e-05 16.5 0.4 9 42 10 43 2 60 0.90 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 1_10 - 212 ArsA_ATPase PF02374.10 305 2.5e-06 20.3 1.6 2 2 0.014 0.59 2.7 0.0 123 136 74 87 61 91 0.81 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 6_2 - 211 ArsA_ATPase PF02374.10 305 2.8e-05 16.9 0.5 1 2 4.7e-06 0.0002 14.1 0.4 4 34 6 36 3 41 0.86 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 6_2 - 211 ArsA_ATPase PF02374.10 305 2.8e-05 16.9 0.5 2 2 0.058 2.4 0.6 0.0 107 134 56 87 41 142 0.82 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 8_3 - 981 PhoH PF02562.11 205 1.4e-08 27.9 5.6 1 2 1e-07 1.7e-05 17.8 0.6 5 47 486 529 484 551 0.84 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 8_3 - 981 PhoH PF02562.11 205 1.4e-08 27.9 5.6 2 2 7.6e-06 0.0013 11.6 0.4 121 167 576 620 570 655 0.73 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 14_2 - 341 T2SE PF00437.15 272 4.2e-70 229.3 0.0 1 1 8.8e-72 4.9e-70 229.1 0.0 4 269 13 323 10 326 0.96 # 255 # 1277 # -1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 13_3 - 237 T2SE PF00437.15 272 2.5e-17 56.2 0.0 1 1 5.5e-19 3.1e-17 55.9 0.0 4 114 13 138 10 172 0.91 # 570 # 1280 # -1 # ID=13_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 31_2 - 143 T2SE PF00437.15 272 0.0011 11.5 0.0 1 1 2.9e-05 0.0016 11.0 0.0 134 159 18 43 10 50 0.84 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 1_10 - 212 Methyltransf_24 PF13578.1 106 3.2e-06 21.6 0.1 1 1 1.6e-07 6.8e-06 20.5 0.1 7 90 13 99 11 112 0.69 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 3_4 - 210 Methyltransf_24 PF13578.1 106 7.1e-05 17.3 0.1 1 1 4.3e-06 0.00018 16.0 0.0 11 85 18 92 10 104 0.74 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 6_2 - 211 Methyltransf_24 PF13578.1 106 0.00012 16.5 0.1 1 1 6.7e-06 0.00028 15.4 0.1 8 95 15 105 11 112 0.59 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 16_4 - 341 Methyltransf_24 PF13578.1 106 0.0013 13.2 0.0 1 1 0.00017 0.0069 10.9 0.0 11 84 18 174 12 194 0.53 # 975 # 1997 # -1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 6_5 - 394 Zeta_toxin PF06414.7 201 2.1e-65 213.2 0.3 1 1 1.9e-67 3.2e-65 212.6 0.3 2 200 22 217 21 218 0.99 # 2646 # 3827 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_10 - 212 VirC1 PF07015.6 231 8.2e-11 35.0 0.3 1 1 3e-12 1.2e-10 34.4 0.3 1 130 1 124 1 179 0.76 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 4_3 - 209 VirC1 PF07015.6 231 1.5e-09 30.8 0.1 1 1 4.5e-11 1.9e-09 30.5 0.1 5 183 4 177 1 199 0.83 # 648 # 1274 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 3_4 - 210 VirC1 PF07015.6 231 2.7e-08 26.7 0.1 1 1 5.8e-09 2.4e-07 23.6 0.1 7 189 6 181 1 203 0.72 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 6_2 - 211 VirC1 PF07015.6 231 1.5e-05 17.8 0.1 1 1 6.3e-07 2.6e-05 17.0 0.1 3 128 4 124 2 182 0.84 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 3_4 - 210 Fer4_NifH PF00142.13 273 3.8e-07 23.1 0.2 1 2 5.9e-07 3.3e-05 16.8 0.0 8 39 9 40 4 46 0.93 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 Fer4_NifH PF00142.13 273 3.8e-07 23.1 0.2 2 2 0.0036 0.2 4.4 0.2 142 244 99 203 93 208 0.75 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 4_3 - 209 Fer4_NifH PF00142.13 273 1.7e-06 21.0 0.0 1 1 6.9e-08 3.8e-06 19.8 0.0 4 42 5 42 3 54 0.89 # 648 # 1274 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 1_10 - 212 Fer4_NifH PF00142.13 273 0.00046 13.0 0.0 1 2 0.00035 0.02 7.7 0.0 7 40 9 42 2 80 0.84 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 1_10 - 212 Fer4_NifH PF00142.13 273 0.00046 13.0 0.0 2 2 0.007 0.39 3.4 0.0 189 245 143 200 131 206 0.82 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 3_4 - 210 AAA_16 PF13191.1 185 5.9e-05 16.7 0.2 1 2 2.9e-05 0.0016 12.1 0.0 34 69 11 47 9 77 0.84 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 AAA_16 PF13191.1 185 5.9e-05 16.7 0.2 2 2 0.017 0.95 3.0 0.1 51 120 94 179 87 208 0.64 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 6_5 - 394 AAA_16 PF13191.1 185 0.0002 15.0 0.0 1 1 1.4e-05 0.00078 13.1 0.0 17 97 26 103 17 124 0.68 # 2646 # 3827 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 8_3 - 981 AAA_16 PF13191.1 185 0.00068 13.3 0.0 1 1 1.2e-05 0.00068 13.3 0.0 14 76 492 552 485 563 0.81 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 31_2 - 143 AAA_23 PF13476.1 202 5.6e-05 17.1 0.0 1 1 1.3e-06 7.4e-05 16.8 0.0 20 39 13 32 1 38 0.86 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 20_1 - 364 AAA_23 PF13476.1 202 0.00013 15.9 0.0 1 1 4.9e-06 0.00027 14.9 0.0 20 39 336 355 320 358 0.86 # 1 # 1092 # 1 # ID=20_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.617 10_7 - 381 AAA_23 PF13476.1 202 0.00016 15.7 0.0 1 1 5.3e-06 0.0003 14.8 0.0 20 39 13 32 1 36 0.86 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 6_2 - 211 AAA_18 PF13238.1 129 0.00021 15.2 0.0 1 1 2.2e-06 0.00036 14.5 0.0 8 40 13 50 11 98 0.67 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 27_1 - 212 AAA_13 PF13166.1 712 6e-05 15.2 3.3 1 1 4.1e-07 6.8e-05 15.0 3.3 361 470 56 164 10 172 0.86 # 89 # 724 # -1 # ID=27_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 3_4 - 210 CbiA PF01656.18 195 2.2e-33 108.9 0.2 1 1 3.5e-34 7.2e-33 107.2 0.2 4 158 6 142 3 176 0.78 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_10 - 212 CbiA PF01656.18 195 7.9e-28 90.8 0.3 1 1 6.6e-29 1.4e-27 90.0 0.3 1 190 4 167 4 172 0.79 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 4_3 - 209 CbiA PF01656.18 195 1.8e-24 79.8 0.2 1 1 1.9e-25 3.9e-24 78.7 0.2 2 193 4 176 3 178 0.77 # 648 # 1274 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 6_2 - 211 CbiA PF01656.18 195 5.7e-19 61.9 0.4 1 1 7.9e-20 1.6e-18 60.4 0.4 1 174 5 159 5 175 0.77 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 16_4 - 341 CbiA PF01656.18 195 1.2e-13 44.5 0.0 1 1 1.1e-14 2.3e-13 43.6 0.0 5 130 9 195 5 234 0.79 # 975 # 1997 # -1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 9_2 - 236 CbiA PF01656.18 195 4.9e-07 22.9 0.1 1 2 0.0033 0.069 6.1 0.0 1 20 3 22 3 24 0.90 # 788 # 1495 # 1 # ID=9_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 9_2 - 236 CbiA PF01656.18 195 4.9e-07 22.9 0.1 2 2 9.4e-06 0.00019 14.5 0.1 118 167 94 143 30 158 0.91 # 788 # 1495 # 1 # ID=9_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 5_4 - 236 CbiA PF01656.18 195 1.3e-06 21.6 0.2 1 2 0.0033 0.069 6.1 0.0 1 20 3 22 3 24 0.90 # 1318 # 2025 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.561 5_4 - 236 CbiA PF01656.18 195 1.3e-06 21.6 0.2 2 2 2e-05 0.00042 13.4 0.1 118 167 94 143 26 172 0.82 # 1318 # 2025 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.561 31_2 - 143 CbiA PF01656.18 195 0.00084 12.4 0.1 1 1 5.9e-05 0.0012 11.8 0.1 7 34 20 47 15 54 0.91 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 27_1 - 212 KaiC PF06745.8 227 0.0016 11.1 1.2 1 1 1.3e-05 0.0022 10.7 0.9 66 128 75 143 50 179 0.78 # 89 # 724 # -1 # ID=27_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 10_7 - 381 AAA_29 PF13555.1 62 4.4e-06 19.8 0.4 1 2 6.8e-06 0.00028 14.0 0.0 18 45 8 34 1 40 0.81 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 10_7 - 381 AAA_29 PF13555.1 62 4.4e-06 19.8 0.4 2 2 0.015 0.64 3.3 0.1 4 15 154 166 152 173 0.78 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 31_2 - 143 AAA_29 PF13555.1 62 2e-05 17.7 0.0 1 1 1.5e-06 6.2e-05 16.1 0.0 17 45 7 34 1 42 0.81 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 20_1 - 364 AAA_29 PF13555.1 62 8e-05 15.8 0.0 1 1 4.2e-06 0.00017 14.7 0.0 14 45 326 357 322 359 0.79 # 1 # 1092 # 1 # ID=20_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.617 8_2 - 525 AAA_29 PF13555.1 62 0.0012 12.0 0.0 1 2 0.074 3.1 1.1 0.0 4 17 91 104 88 112 0.73 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 8_2 - 525 AAA_29 PF13555.1 62 0.0012 12.0 0.0 2 2 0.00065 0.027 7.7 0.0 17 44 134 161 130 169 0.87 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 6_2 - 211 AAA PF00004.24 132 0.00033 14.5 0.0 1 1 3.8e-06 0.00063 13.6 0.0 8 35 13 40 7 87 0.78 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 19_2 - 161 NAD_binding_11 PF14833.1 122 1.2e-05 19.0 0.3 1 4 0.0033 0.54 4.0 0.0 26 50 7 31 6 42 0.82 # 894 # 1376 # 1 # ID=19_2;partial=01;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.687 19_2 - 161 NAD_binding_11 PF14833.1 122 1.2e-05 19.0 0.3 2 4 0.0015 0.26 5.0 0.0 26 51 41 66 39 91 0.73 # 894 # 1376 # 1 # ID=19_2;partial=01;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.687 19_2 - 161 NAD_binding_11 PF14833.1 122 1.2e-05 19.0 0.3 3 4 0.0083 1.4 2.7 0.0 26 50 75 99 73 108 0.82 # 894 # 1376 # 1 # ID=19_2;partial=01;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.687 19_2 - 161 NAD_binding_11 PF14833.1 122 1.2e-05 19.0 0.3 4 4 0.0036 0.6 3.8 0.0 26 49 109 132 107 152 0.83 # 894 # 1376 # 1 # ID=19_2;partial=01;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.687 5_7 - 223 MT-A70 PF05063.9 176 5.1e-35 114.2 0.0 1 1 3.8e-37 6.4e-35 113.9 0.0 1 176 24 195 24 195 0.91 # 2861 # 3529 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.598 31_2 - 143 DUF258 PF03193.11 161 0.00015 14.6 0.0 1 1 2.5e-06 0.00021 14.2 0.0 37 95 14 83 4 95 0.85 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 10_7 - 381 DUF258 PF03193.11 161 0.0011 11.8 0.0 1 1 2.3e-05 0.0019 11.0 0.0 38 95 15 83 4 91 0.84 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 11_2 - 684 TraG-D_C PF12696.2 128 1.5e-28 92.9 0.0 1 1 2.6e-30 2.2e-28 92.3 0.0 1 127 411 532 411 533 0.84 # 313 # 2364 # 1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 8_2 - 525 TraG-D_C PF12696.2 128 2.1e-22 73.0 0.0 1 1 4.8e-24 4e-22 72.1 0.0 1 127 368 490 368 491 0.91 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 3_4 - 210 AAA_31 PF13614.1 157 5.5e-12 39.5 0.0 1 2 5.6e-10 1.9e-08 28.0 0.0 2 42 2 42 1 46 0.90 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 AAA_31 PF13614.1 157 5.5e-12 39.5 0.0 2 2 0.00029 0.0098 9.5 0.0 111 154 70 112 61 115 0.85 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_10 - 212 AAA_31 PF13614.1 157 1.8e-09 31.3 0.0 1 2 2.8e-05 0.00094 12.8 0.1 9 42 10 43 2 57 0.82 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 1_10 - 212 AAA_31 PF13614.1 157 1.8e-09 31.3 0.0 2 2 1.5e-06 5e-05 16.9 0.0 102 153 61 112 50 116 0.82 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 4_3 - 209 AAA_31 PF13614.1 157 1.3e-08 28.5 0.0 1 1 5.8e-09 1.9e-07 24.7 0.0 7 40 7 39 2 44 0.87 # 648 # 1274 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 6_2 - 211 AAA_31 PF13614.1 157 2.2e-08 27.8 0.0 1 2 4.4e-07 1.5e-05 18.6 0.0 2 43 4 45 3 65 0.85 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 6_2 - 211 AAA_31 PF13614.1 157 2.2e-08 27.8 0.0 2 2 0.0012 0.04 7.5 0.0 103 150 63 111 56 116 0.83 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 16_4 - 341 AAA_31 PF13614.1 157 1.7e-06 21.7 0.1 1 1 5.1e-07 1.7e-05 18.4 0.1 7 156 9 197 5 198 0.77 # 975 # 1997 # -1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 6_5 - 394 AAA_33 PF13671.1 143 1.6e-06 21.7 0.8 1 2 5.9e-08 9.7e-06 19.1 0.1 2 123 37 165 36 184 0.78 # 2646 # 3827 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 6_5 - 394 AAA_33 PF13671.1 143 1.6e-06 21.7 0.8 2 2 0.03 5 0.6 0.1 30 68 225 264 201 282 0.53 # 2646 # 3827 # 1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 8_3 - 981 AAA_30 PF13604.1 196 7.7e-57 185.6 7.2 1 1 1.5e-58 2.5e-56 184.0 7.2 2 192 486 673 485 676 0.97 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 8_2 - 525 FtsK_SpoIIIE PF01580.13 205 4e-07 23.3 0.0 1 2 1.5e-08 2.5e-06 20.7 0.0 16 80 118 178 102 185 0.71 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 8_2 - 525 FtsK_SpoIIIE PF01580.13 205 4e-07 23.3 0.0 2 2 0.041 6.9 -0.3 0.0 142 174 293 362 260 371 0.70 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 1 13 0.0092 0.31 4.5 0.0 22 50 126 156 123 167 0.73 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 2 13 0.0092 0.31 4.5 0.0 22 50 160 190 157 201 0.73 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 3 13 0.048 1.6 2.2 0.0 22 47 194 219 190 234 0.73 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 4 13 0.01 0.35 4.4 0.0 22 50 228 258 225 268 0.74 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 5 13 0.01 0.34 4.4 0.0 22 50 262 292 258 302 0.75 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 6 13 0.0046 0.15 5.5 0.0 22 52 296 328 293 337 0.78 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 7 13 0.0092 0.31 4.5 0.0 22 50 330 360 327 371 0.73 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 8 13 0.012 0.41 4.1 0.0 22 58 364 400 362 405 0.72 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 9 13 0.004 0.13 5.7 0.0 22 52 398 430 393 439 0.78 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 10 13 0.005 0.17 5.4 0.0 22 52 432 464 431 473 0.77 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 11 13 0.012 0.41 4.1 0.0 22 58 466 502 464 507 0.72 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 12 13 0.0079 0.26 4.7 0.0 22 50 500 530 495 541 0.74 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 17_1 - 638 RBD PF02196.10 71 4.1e-18 58.6 9.1 13 13 0.047 1.6 2.3 0.0 22 41 534 553 530 563 0.84 # 1 # 1914 # -1 # ID=17_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 19_1 - 312 RBD PF02196.10 71 2.1e-15 49.9 3.8 1 9 0.099 3.3 1.2 0.0 31 51 1 23 1 33 0.71 # 1 # 936 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.683 19_1 - 312 RBD PF02196.10 71 2.1e-15 49.9 3.8 2 9 0.004 0.13 5.7 0.0 22 50 26 56 22 66 0.75 # 1 # 936 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.683 19_1 - 312 RBD PF02196.10 71 2.1e-15 49.9 3.8 3 9 0.0037 0.12 5.8 0.0 22 51 60 91 56 101 0.74 # 1 # 936 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.683 19_1 - 312 RBD PF02196.10 71 2.1e-15 49.9 3.8 4 9 0.018 0.58 3.6 0.0 22 47 94 119 89 135 0.73 # 1 # 936 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.683 19_1 - 312 RBD PF02196.10 71 2.1e-15 49.9 3.8 5 9 0.0018 0.059 6.8 0.0 22 52 128 160 124 169 0.78 # 1 # 936 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.683 19_1 - 312 RBD PF02196.10 71 2.1e-15 49.9 3.8 6 9 0.0037 0.12 5.8 0.0 22 51 162 193 159 203 0.73 # 1 # 936 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.683 19_1 - 312 RBD PF02196.10 71 2.1e-15 49.9 3.8 7 9 0.0022 0.072 6.5 0.0 22 52 196 228 194 236 0.79 # 1 # 936 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.683 19_1 - 312 RBD PF02196.10 71 2.1e-15 49.9 3.8 8 9 0.0018 0.061 6.8 0.0 22 52 230 262 227 271 0.78 # 1 # 936 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.683 19_1 - 312 RBD PF02196.10 71 2.1e-15 49.9 3.8 9 9 0.0081 0.27 4.7 0.0 22 42 264 284 260 300 0.79 # 1 # 936 # 1 # ID=19_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.683 19_2 - 161 RBD PF02196.10 71 8.6e-08 25.5 0.1 1 4 0.0052 0.17 5.3 0.0 29 51 7 31 4 41 0.70 # 894 # 1376 # 1 # ID=19_2;partial=01;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.687 19_2 - 161 RBD PF02196.10 71 8.6e-08 25.5 0.1 2 4 0.0013 0.042 7.3 0.0 22 51 34 65 30 75 0.74 # 894 # 1376 # 1 # ID=19_2;partial=01;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.687 19_2 - 161 RBD PF02196.10 71 8.6e-08 25.5 0.1 3 4 0.0091 0.3 4.5 0.0 22 47 68 93 66 107 0.73 # 894 # 1376 # 1 # ID=19_2;partial=01;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.687 19_2 - 161 RBD PF02196.10 71 8.6e-08 25.5 0.1 4 4 0.0037 0.12 5.8 0.0 22 41 102 121 97 141 0.84 # 894 # 1376 # 1 # ID=19_2;partial=01;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.687 32_2 - 62 RBD PF02196.10 71 8.6e-05 15.9 0.0 1 2 0.00073 0.024 8.1 0.0 28 52 6 32 3 41 0.71 # 259 # 444 # 1 # ID=32_2;partial=01;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.699 32_2 - 62 RBD PF02196.10 71 8.6e-05 15.9 0.0 2 2 0.0011 0.036 7.5 0.0 22 41 34 53 31 59 0.85 # 259 # 444 # 1 # ID=32_2;partial=01;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.699 35_1 - 107 RBD PF02196.10 71 9.6e-05 15.8 0.0 1 2 0.00061 0.02 8.3 0.0 22 52 14 46 11 55 0.73 # 2 # 322 # -1 # ID=35_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 35_1 - 107 RBD PF02196.10 71 9.6e-05 15.8 0.0 2 2 0.0022 0.072 6.6 0.0 22 42 48 68 47 87 0.82 # 2 # 322 # -1 # ID=35_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.676 31_2 - 143 ABC_tran PF00005.22 137 0.00041 14.3 0.0 1 1 6.1e-06 0.0005 14.0 0.0 15 42 16 43 12 98 0.82 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 10_7 - 381 ABC_tran PF00005.22 137 0.0014 12.6 0.0 1 1 2.8e-05 0.0023 11.9 0.0 15 42 16 43 12 140 0.86 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 8_3 - 981 AAA_19 PF13245.1 76 1e-10 34.9 6.1 1 2 2.1e-10 6.9e-09 29.0 0.3 2 75 493 564 492 565 0.85 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 8_3 - 981 AAA_19 PF13245.1 76 1e-10 34.9 6.1 2 2 0.0013 0.044 7.2 0.0 31 63 683 722 679 734 0.72 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 3_4 - 210 AAA_19 PF13245.1 76 6e-05 16.4 0.1 1 1 8.4e-06 0.00028 14.3 0.0 20 56 11 45 9 63 0.88 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 4_3 - 209 AAA_19 PF13245.1 76 0.00023 14.6 1.2 1 1 1.2e-05 0.00041 13.8 0.1 15 46 6 33 3 62 0.82 # 648 # 1274 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 1_10 - 212 AAA_19 PF13245.1 76 0.00055 13.3 3.3 1 2 0.00019 0.0062 10.0 0.5 20 49 12 39 10 63 0.80 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 1_10 - 212 AAA_19 PF13245.1 76 0.00055 13.3 3.3 2 2 0.021 0.71 3.4 0.1 1 19 68 87 68 129 0.90 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 6_2 - 211 AAA_19 PF13245.1 76 0.00086 12.7 3.4 1 2 0.0066 0.22 5.0 0.7 20 56 13 48 11 69 0.71 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 6_2 - 211 AAA_19 PF13245.1 76 0.00086 12.7 3.4 2 2 0.00095 0.032 7.7 0.1 2 37 73 107 69 133 0.80 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 10_7 - 381 AAA_10 PF12846.2 304 4.9e-21 69.0 0.0 1 1 2.7e-22 1.1e-20 67.8 0.0 2 303 13 293 12 294 0.90 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 31_2 - 143 AAA_10 PF12846.2 304 5.6e-13 42.5 0.0 1 1 1.5e-14 6.3e-13 42.4 0.0 2 114 13 120 12 137 0.90 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 8_2 - 525 AAA_10 PF12846.2 304 1.7e-09 31.1 0.2 1 2 1.5e-08 6.1e-07 22.7 0.0 1 43 140 182 140 289 0.83 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 8_2 - 525 AAA_10 PF12846.2 304 1.7e-09 31.1 0.2 2 2 0.0013 0.055 6.4 0.0 214 300 353 447 324 451 0.74 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 3_4 - 210 AAA_10 PF12846.2 304 9.2e-05 15.6 0.0 1 1 3.1e-06 0.00013 15.1 0.0 11 51 11 53 9 137 0.90 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 4_13 - 215 RNA_pol_Rpb2_3 PF04565.11 68 5.8e-05 16.5 0.0 1 1 7.6e-07 0.00013 15.4 0.0 24 55 75 106 67 107 0.92 # 6121 # 6765 # 1 # ID=4_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.578 8_3 - 981 Viral_helicase1 PF01443.13 234 4.7e-11 36.2 0.5 1 2 8.9e-07 0.00015 15.0 0.0 3 118 507 630 505 690 0.77 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 8_3 - 981 Viral_helicase1 PF01443.13 234 4.7e-11 36.2 0.5 2 2 4.4e-08 7.2e-06 19.2 0.1 184 233 873 918 828 919 0.82 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 8_3 - 981 DUF2075 PF09848.4 352 0.0012 11.5 3.5 1 3 0.089 15 -2.0 0.3 42 97 117 173 90 267 0.53 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 8_3 - 981 DUF2075 PF09848.4 352 0.0012 11.5 3.5 2 3 5.3e-06 0.00088 11.9 0.2 4 50 505 554 502 676 0.74 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 8_3 - 981 DUF2075 PF09848.4 352 0.0012 11.5 3.5 3 3 0.06 9.9 -1.4 0.0 277 337 876 906 870 921 0.53 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 8_2 - 525 DEAD PF00270.24 169 0.0019 11.3 0.0 1 1 1.8e-05 0.003 10.7 0.0 8 50 134 174 132 309 0.89 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 8_2 - 525 TrwB_AAD_bind PF10412.4 386 8.9e-129 423.0 0.0 1 1 2.5e-130 1.1e-128 422.8 0.0 2 386 127 510 126 510 0.96 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 11_2 - 684 TrwB_AAD_bind PF10412.4 386 1.3e-28 93.2 0.0 1 1 5.4e-30 2.2e-28 92.5 0.0 44 386 183 552 158 552 0.87 # 313 # 2364 # 1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 31_2 - 143 TrwB_AAD_bind PF10412.4 386 0.00023 13.5 0.1 1 1 7e-06 0.00029 13.1 0.1 15 51 12 48 6 63 0.89 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 10_7 - 381 TrwB_AAD_bind PF10412.4 386 0.00074 11.8 0.0 1 1 3.4e-05 0.0014 10.8 0.0 15 51 12 48 6 58 0.89 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 8_3 - 981 AAA_11 PF13086.1 236 1.9e-05 17.9 2.0 1 1 1.8e-06 0.0003 14.0 2.1 2 44 486 593 485 742 0.50 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 11_2 - 684 T4SS-DNA_transf PF02534.9 469 1.2e-104 344.0 0.0 1 1 1.9e-106 1.6e-104 343.7 0.0 1 456 122 563 122 573 0.92 # 313 # 2364 # 1 # ID=11_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 8_2 - 525 T4SS-DNA_transf PF02534.9 469 2.9e-22 72.4 0.0 1 1 8.4e-24 7e-22 71.2 0.0 217 447 285 512 225 520 0.83 # 188 # 1762 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 6_2 - 211 ArgK PF03308.11 267 5.8e-05 15.6 0.3 1 1 5.4e-06 0.00045 12.6 0.3 37 84 11 55 2 123 0.82 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 3_4 - 210 ArgK PF03308.11 267 0.00035 13.0 0.0 1 1 1e-05 0.00086 11.7 0.0 37 68 9 40 1 46 0.85 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 8_3 - 981 PIF1 PF05970.9 364 0.00034 13.2 0.3 1 1 4.9e-06 0.00082 12.0 0.1 2 49 486 529 485 614 0.81 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 1_10 - 212 GTP_EFTU PF00009.22 188 0.00025 14.1 0.0 1 1 4.5e-06 0.00037 13.6 0.0 14 99 13 105 8 109 0.74 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 9_2 - 236 GTP_EFTU PF00009.22 188 0.0015 11.6 0.4 1 1 0.00021 0.017 8.1 0.4 14 133 12 135 3 216 0.68 # 788 # 1495 # 1 # ID=9_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 4_3 - 209 AAA_24 PF13479.1 213 1.2e-05 18.6 0.0 1 1 2.3e-07 1.9e-05 17.9 0.0 8 77 6 87 2 90 0.78 # 648 # 1274 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 3_4 - 210 AAA_24 PF13479.1 213 0.00021 14.5 0.0 1 1 4.6e-06 0.00038 13.7 0.0 11 84 9 92 5 101 0.71 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 31_2 - 143 AAA_25 PF13481.1 194 1.7e-06 21.2 0.0 1 1 9.6e-08 2.3e-06 20.8 0.0 28 139 9 118 4 126 0.64 # 107 # 535 # -1 # ID=31_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.629 6_2 - 211 AAA_25 PF13481.1 194 5.3e-06 19.5 1.1 1 1 5.6e-06 0.00013 15.0 1.1 41 161 11 98 4 111 0.71 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 10_7 - 381 AAA_25 PF13481.1 194 6.2e-06 19.3 0.0 1 1 5.6e-07 1.3e-05 18.3 0.0 28 139 9 118 5 126 0.64 # 3123 # 4265 # -1 # ID=10_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.601 3_4 - 210 AAA_25 PF13481.1 194 3.7e-05 16.8 0.5 1 1 5.4e-06 0.00013 15.0 0.1 41 85 9 43 3 107 0.61 # 1346 # 1975 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 4_3 - 209 AAA_25 PF13481.1 194 7.9e-05 15.7 0.1 1 1 5.6e-06 0.00013 15.0 0.1 35 78 3 35 1 85 0.83 # 648 # 1274 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.633 20_1 - 364 AAA_25 PF13481.1 194 0.00028 14.0 0.4 1 1 2.7e-05 0.00063 12.8 0.0 27 57 331 359 298 364 0.85 # 1 # 1092 # 1 # ID=20_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.617 1_10 - 212 AAA_25 PF13481.1 194 0.0029 10.6 3.7 1 1 0.00062 0.015 8.3 2.6 37 150 6 85 1 95 0.62 # 10475 # 11110 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.659 6_2 - 211 AAA_28 PF13521.1 163 0.00013 15.6 0.8 1 2 0.00021 0.034 7.7 0.2 9 23 13 31 12 94 0.78 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 6_2 - 211 AAA_28 PF13521.1 163 0.00013 15.6 0.8 2 2 0.00043 0.071 6.7 0.0 50 94 133 180 69 201 0.79 # 1334 # 1966 # 1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.657 8_3 - 981 Herpes_Helicase PF02689.9 819 0.00034 12.0 0.0 1 2 0.04 6.7 -2.2 0.0 177 210 556 589 538 595 0.71 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 8_3 - 981 Herpes_Helicase PF02689.9 819 0.00034 12.0 0.0 2 2 6.8e-06 0.0011 10.3 0.0 741 785 872 917 848 926 0.84 # 1776 # 4718 # 1 # ID=8_3;partial=01;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.659 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/88d2e8d3-a4fe-4cdd-8340-6b1f7234cf2b # Target file: checkm_output/bins/pGCA_001610815.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001610815.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/88d2e8d3-a4fe-4cdd-8340-6b1f7234cf2b checkm_output/bins/pGCA_001610815.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:41 2020 # [ok]