# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 24_1 - 195 Seryl_tRNA_N PF02403.17 108 0.047 7.0 8.7 1 2 0.00032 0.04 7.2 3.4 35 101 54 121 31 127 0.73 # 30 # 614 # -1 # ID=24_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 24_1 - 195 Seryl_tRNA_N PF02403.17 108 0.047 7.0 8.7 2 2 0.00096 0.12 5.7 6.5 38 100 82 148 55 152 0.63 # 30 # 614 # -1 # ID=24_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 17_2 - 211 IstB_IS21 PF01695.12 178 0.00019 14.1 0.6 1 1 7.7e-06 0.00098 11.8 0.6 56 80 12 36 5 96 0.90 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 3_4 - 210 MipZ PF09140.6 261 1.3e-13 43.9 0.2 1 2 7e-09 2.2e-07 23.4 0.0 3 42 3 42 1 51 0.88 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 MipZ PF09140.6 261 1.3e-13 43.9 0.2 2 2 2.4e-07 7.6e-06 18.4 0.0 89 135 67 113 62 152 0.78 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 14_2 - 133 MipZ PF09140.6 261 1.1e-11 37.5 0.1 1 1 3.8e-11 1.2e-09 30.8 0.1 4 135 4 116 1 125 0.76 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 17_2 - 211 MipZ PF09140.6 261 1.1e-09 30.9 1.5 1 2 1.2e-07 3.7e-06 19.4 0.3 2 46 4 48 3 57 0.89 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 17_2 - 211 MipZ PF09140.6 261 1.1e-09 30.9 1.5 2 2 8.2e-05 0.0026 10.1 0.0 89 130 70 111 50 121 0.79 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 8_5 - 184 MipZ PF09140.6 261 0.00089 11.6 0.0 1 1 3.6e-05 0.0012 11.2 0.0 85 128 106 149 78 156 0.83 # 1164 # 1715 # -1 # ID=8_5;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.560 3_4 - 210 YhjQ PF06564.7 244 1.1e-09 31.2 0.6 1 2 3.6e-08 2.3e-06 20.4 0.1 4 41 3 40 1 44 0.91 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 YhjQ PF06564.7 244 1.1e-09 31.2 0.6 2 2 0.00011 0.0068 9.0 0.0 108 229 69 198 63 206 0.65 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 17_2 - 211 YhjQ PF06564.7 244 0.00035 13.2 0.2 1 2 0.0039 0.25 3.8 0.2 4 38 5 39 1 43 0.81 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 17_2 - 211 YhjQ PF06564.7 244 0.00035 13.2 0.2 2 2 0.00034 0.022 7.3 0.0 102 144 64 106 51 114 0.88 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 22_1 - 291 UvrD_C_2 PF13538.1 104 3.3e-07 23.7 0.1 1 2 0.039 4.9 0.7 0.1 49 71 23 48 5 62 0.70 # 1 # 873 # 1 # ID=22_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.667 22_1 - 291 UvrD_C_2 PF13538.1 104 3.3e-07 23.7 0.1 2 2 7.3e-08 9.3e-06 19.0 0.0 3 67 211 282 209 286 0.65 # 1 # 873 # 1 # ID=22_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.667 7_1 - 534 DUF87 PF01935.12 229 0.00011 15.2 0.0 1 1 2.7e-06 0.00017 14.7 0.0 24 74 141 188 132 307 0.80 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_1 - 890 DUF87 PF01935.12 229 0.00034 13.7 0.1 1 1 2.3e-05 0.0015 11.6 0.0 19 45 517 543 514 557 0.87 # 46 # 2715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 7_3 - 306 AAA_22 PF13401.1 131 9.5e-05 15.8 0.3 1 1 0.00015 0.0049 10.3 0.3 6 125 167 274 162 280 0.62 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 1_1 - 890 AAA_22 PF13401.1 131 0.0001 15.7 0.0 1 1 1.5e-05 0.00048 13.5 0.0 4 103 521 624 516 646 0.65 # 46 # 2715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 13_2 - 325 AAA_22 PF13401.1 131 0.00021 14.7 0.1 1 2 8.8e-05 0.0028 11.1 0.0 77 125 53 103 2 109 0.74 # 258 # 1232 # 1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.609 13_2 - 325 AAA_22 PF13401.1 131 0.00021 14.7 0.1 2 2 0.088 2.8 1.4 0.0 69 115 247 298 186 308 0.63 # 258 # 1232 # 1 # ID=13_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.609 17_2 - 211 AAA_22 PF13401.1 131 0.00061 13.2 0.0 1 1 4e-05 0.0013 12.2 0.0 14 94 13 86 5 103 0.65 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 14_2 - 133 SRP54 PF00448.17 196 1.1e-06 21.4 0.0 1 1 3.4e-08 1.4e-06 21.1 0.0 11 95 11 91 2 106 0.78 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 3_4 - 210 SRP54 PF00448.17 196 7.4e-05 15.5 0.0 1 1 2.8e-06 0.00012 14.8 0.0 10 40 10 40 1 90 0.80 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 17_2 - 211 SRP54 PF00448.17 196 0.00013 14.7 0.5 1 1 5.1e-06 0.00022 14.0 0.5 11 95 13 91 3 104 0.79 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 17_2 - 211 AAA_17 PF13207.1 121 3.9e-06 21.0 0.0 1 1 2.1e-07 8.8e-06 19.8 0.0 9 87 13 101 11 129 0.58 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 19_2 - 378 AAA_17 PF13207.1 121 5.1e-05 17.3 2.1 1 1 4.4e-06 0.00019 15.5 1.4 2 111 37 161 36 299 0.75 # 327 # 1460 # 1 # ID=19_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 3_4 - 210 AAA_17 PF13207.1 121 0.00014 15.9 0.0 1 1 5e-06 0.00021 15.4 0.0 9 78 11 99 10 165 0.66 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 17_2 - 211 MobB PF03205.9 140 2.8e-07 23.6 0.0 1 1 8.6e-09 5.4e-07 22.6 0.0 2 113 4 100 3 121 0.73 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 3_4 - 210 MobB PF03205.9 140 0.00079 12.4 0.0 1 1 2.6e-05 0.0017 11.3 0.0 10 75 11 61 1 124 0.70 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 ArsA_ATPase PF02374.10 305 1.8e-09 30.3 0.7 1 2 1.8e-10 7.7e-09 28.2 0.1 7 43 7 43 1 62 0.88 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 ArsA_ATPase PF02374.10 305 1.8e-09 30.3 0.7 2 2 0.084 3.6 -0.3 0.0 124 136 74 86 57 91 0.81 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 14_2 - 133 ArsA_ATPase PF02374.10 305 2.8e-08 26.3 0.4 1 1 8.7e-10 3.7e-08 25.9 0.4 5 42 5 41 1 47 0.86 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 17_2 - 211 ArsA_ATPase PF02374.10 305 2.1e-05 16.9 0.5 1 2 3.6e-06 0.00015 14.1 0.4 4 34 6 36 3 41 0.86 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 17_2 - 211 ArsA_ATPase PF02374.10 305 2.1e-05 16.9 0.5 2 2 0.044 1.9 0.6 0.0 107 134 56 87 41 142 0.82 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 7_3 - 306 PhoH PF02562.11 205 4.3e-10 32.4 4.0 1 2 3.3e-08 4.1e-06 19.4 0.7 5 47 149 192 147 199 0.86 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 7_3 - 306 PhoH PF02562.11 205 4.3e-10 32.4 4.0 2 2 1.4e-06 0.00018 14.0 0.1 120 163 238 282 211 306 0.78 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 1_9 - 341 T2SE PF00437.15 272 3.2e-70 229.3 0.0 1 1 2.9e-72 3.7e-70 229.1 0.0 4 269 13 323 10 326 0.96 # 7597 # 8619 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.591 3_4 - 210 Methyltransf_24 PF13578.1 106 5.5e-05 17.3 0.1 1 1 2.1e-06 0.00014 16.0 0.0 11 85 18 92 10 104 0.74 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 17_2 - 211 Methyltransf_24 PF13578.1 106 9.5e-05 16.5 0.1 1 1 3.3e-06 0.00021 15.4 0.1 8 95 15 105 11 112 0.59 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 19_2 - 378 Zeta_toxin PF06414.7 201 1.5e-65 213.3 0.3 1 1 1.7e-67 2.2e-65 212.8 0.3 2 200 22 217 21 218 0.99 # 327 # 1460 # 1 # ID=19_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 3_4 - 210 VirC1 PF07015.6 231 2.1e-08 26.7 0.1 1 1 4.3e-09 1.8e-07 23.6 0.1 7 189 6 181 1 203 0.72 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 17_2 - 211 VirC1 PF07015.6 231 1.1e-05 17.8 0.1 1 1 4.7e-07 2e-05 17.0 0.1 3 128 4 124 2 182 0.84 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 14_2 - 133 VirC1 PF07015.6 231 3.9e-05 16.0 0.0 1 1 1.3e-06 5.3e-05 15.6 0.0 5 47 4 45 1 66 0.84 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 3_4 - 210 Fer4_NifH PF00142.13 273 2.9e-07 23.1 0.2 1 2 4e-07 2.5e-05 16.8 0.0 8 39 9 40 4 46 0.93 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 Fer4_NifH PF00142.13 273 2.9e-07 23.1 0.2 2 2 0.0024 0.15 4.4 0.2 142 244 99 203 93 208 0.75 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 14_2 - 133 Fer4_NifH PF00142.13 273 1e-06 21.3 0.0 1 1 2.3e-08 1.5e-06 20.8 0.0 4 42 5 42 3 48 0.88 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 7_3 - 306 AAA_16 PF13191.1 185 2.7e-06 20.7 0.5 1 2 1.5e-06 6.6e-05 16.2 0.0 14 76 155 215 137 218 0.84 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 7_3 - 306 AAA_16 PF13191.1 185 2.7e-06 20.7 0.5 2 2 0.066 2.8 1.1 0.0 131 158 216 245 210 248 0.81 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 3_4 - 210 AAA_16 PF13191.1 185 4.5e-05 16.7 0.2 1 2 2.9e-05 0.0012 12.1 0.0 34 69 11 47 9 77 0.84 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 AAA_16 PF13191.1 185 4.5e-05 16.7 0.2 2 2 0.017 0.73 3.0 0.1 51 120 94 179 87 208 0.64 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 19_2 - 378 AAA_16 PF13191.1 185 0.00014 15.1 0.1 1 1 8e-06 0.00034 13.9 0.0 17 98 26 104 17 264 0.84 # 327 # 1460 # 1 # ID=19_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 1_1 - 890 AAA_23 PF13476.1 202 0.00019 15.0 0.1 1 1 4.4e-06 0.00056 13.5 0.0 20 39 522 541 507 545 0.86 # 46 # 2715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 17_2 - 211 AAA_18 PF13238.1 129 0.00016 15.2 0.0 1 1 4.4e-06 0.00028 14.5 0.0 8 40 13 50 11 98 0.67 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 19_2 - 378 AAA_18 PF13238.1 129 0.00038 14.0 0.0 1 1 5e-05 0.0032 11.0 0.0 1 33 37 78 37 149 0.69 # 327 # 1460 # 1 # ID=19_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 24_1 - 195 AAA_13 PF13166.1 712 5e-05 15.1 3.4 1 1 4.5e-07 5.7e-05 14.9 3.4 362 470 40 147 7 155 0.89 # 30 # 614 # -1 # ID=24_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 3_4 - 210 CbiA PF01656.18 195 1.7e-33 108.9 0.2 1 1 2.2e-34 5.5e-33 107.2 0.2 4 158 6 142 3 176 0.78 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 14_2 - 133 CbiA PF01656.18 195 2e-20 66.2 0.0 1 1 1.8e-21 4.6e-20 65.1 0.0 2 142 4 127 3 129 0.79 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 17_2 - 211 CbiA PF01656.18 195 4.4e-19 61.9 0.4 1 1 4.9e-20 1.3e-18 60.4 0.4 1 174 5 159 5 175 0.77 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 8_5 - 184 CbiA PF01656.18 195 7.7e-07 21.9 0.0 1 1 3.6e-08 9.1e-07 21.7 0.0 37 128 3 153 2 177 0.68 # 1164 # 1715 # -1 # ID=8_5;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.560 2_6 - 211 CbiA PF01656.18 195 6.5e-05 15.6 0.1 1 1 6.6e-06 0.00017 14.3 0.0 118 167 69 118 64 138 0.90 # 2873 # 3505 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 24_1 - 195 KaiC PF06745.8 227 0.00063 12.1 0.2 1 1 5.5e-06 0.0007 12.0 0.2 66 128 58 126 11 164 0.81 # 30 # 614 # -1 # ID=24_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 7_3 - 306 AAA_14 PF13173.1 128 0.00064 12.9 0.0 1 1 9e-06 0.0011 12.1 0.0 2 73 165 249 164 287 0.65 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 1_1 - 890 AAA_29 PF13555.1 62 1e-05 18.3 0.2 1 2 5.7e-06 0.00036 13.3 0.0 14 45 512 543 508 549 0.80 # 46 # 2715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 1_1 - 890 AAA_29 PF13555.1 62 1e-05 18.3 0.2 2 2 0.02 1.3 2.0 0.1 4 15 663 675 661 682 0.78 # 46 # 2715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 7_1 - 534 AAA_29 PF13555.1 62 0.00098 11.9 0.0 1 2 0.038 2.4 1.1 0.0 4 17 91 104 88 112 0.73 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 7_1 - 534 AAA_29 PF13555.1 62 0.00098 11.9 0.0 2 2 0.00033 0.021 7.7 0.0 17 44 134 161 130 169 0.87 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 17_2 - 211 AAA PF00004.24 132 0.00025 14.5 0.0 1 1 3.8e-06 0.00049 13.6 0.0 8 35 13 40 7 87 0.78 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 7_1 - 534 TraG-D_C PF12696.2 128 1.7e-22 72.9 0.0 1 1 2.5e-24 3.1e-22 72.1 0.0 1 127 368 490 368 491 0.91 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 3_4 - 210 AAA_31 PF13614.1 157 4.2e-12 39.5 0.0 1 2 4.5e-10 1.4e-08 28.0 0.0 2 42 2 42 1 46 0.90 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_4 - 210 AAA_31 PF13614.1 157 4.2e-12 39.5 0.0 2 2 0.00024 0.0075 9.5 0.0 111 154 70 112 61 115 0.85 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 14_2 - 133 AAA_31 PF13614.1 157 8.8e-09 28.7 0.0 1 2 2.2e-09 6.8e-08 25.8 0.0 7 40 7 39 2 44 0.87 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 14_2 - 133 AAA_31 PF13614.1 157 8.8e-09 28.7 0.0 2 2 0.095 3 1.0 0.0 117 152 79 113 46 118 0.70 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 17_2 - 211 AAA_31 PF13614.1 157 1.7e-08 27.8 0.0 1 2 3.5e-07 1.1e-05 18.6 0.0 2 43 4 45 3 65 0.85 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 17_2 - 211 AAA_31 PF13614.1 157 1.7e-08 27.8 0.0 2 2 0.00095 0.03 7.5 0.0 103 150 63 111 56 116 0.83 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 8_5 - 184 AAA_31 PF13614.1 157 3e-05 17.2 0.0 1 1 1.1e-06 3.6e-05 17.0 0.0 108 156 110 157 51 158 0.92 # 1164 # 1715 # -1 # ID=8_5;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.560 19_2 - 378 AAA_33 PF13671.1 143 9.6e-07 22.0 0.8 1 2 5.4e-08 6.8e-06 19.3 0.1 2 123 37 165 36 184 0.78 # 327 # 1460 # 1 # ID=19_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 19_2 - 378 AAA_33 PF13671.1 143 9.6e-07 22.0 0.8 2 2 0.024 3.1 0.9 0.1 54 68 250 264 200 301 0.61 # 327 # 1460 # 1 # ID=19_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 7_3 - 306 AAA_30 PF13604.1 196 1.2e-50 165.1 7.5 1 1 3.2e-52 2e-50 164.3 7.5 2 162 149 306 148 306 0.98 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 22_1 - 291 AAA_30 PF13604.1 196 3.7e-19 62.3 0.5 1 1 1e-20 6.6e-19 61.5 0.5 121 192 1 72 1 75 0.95 # 1 # 873 # 1 # ID=22_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.667 7_1 - 534 FtsK_SpoIIIE PF01580.13 205 3.2e-07 23.2 0.0 1 2 1.5e-08 2e-06 20.7 0.0 16 80 118 178 102 185 0.71 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 7_1 - 534 FtsK_SpoIIIE PF01580.13 205 3.2e-07 23.2 0.0 2 2 0.042 5.4 -0.4 0.0 142 174 293 362 260 371 0.70 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 26_1 - 154 RBD PF02196.10 71 1.2e-07 24.7 0.1 1 3 0.0014 0.03 7.4 0.0 22 51 52 83 48 93 0.74 # 1 # 462 # -1 # ID=26_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.680 26_1 - 154 RBD PF02196.10 71 1.2e-07 24.7 0.1 2 3 0.0007 0.015 8.4 0.0 22 52 86 118 82 127 0.78 # 1 # 462 # -1 # ID=26_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.680 26_1 - 154 RBD PF02196.10 71 1.2e-07 24.7 0.1 3 3 0.0014 0.029 7.5 0.0 22 52 120 152 117 154 0.81 # 1 # 462 # -1 # ID=26_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.680 27_1 - 106 RBD PF02196.10 71 2.8e-07 23.5 0.1 1 3 0.00072 0.015 8.3 0.0 22 52 17 49 14 58 0.73 # 1 # 318 # -1 # ID=27_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.679 27_1 - 106 RBD PF02196.10 71 2.8e-07 23.5 0.1 2 3 0.00075 0.016 8.3 0.0 22 52 51 83 48 92 0.74 # 1 # 318 # -1 # ID=27_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.679 27_1 - 106 RBD PF02196.10 71 2.8e-07 23.5 0.1 3 3 0.0047 0.099 5.7 0.0 22 40 85 103 81 105 0.85 # 1 # 318 # -1 # ID=27_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.679 15_1 - 434 RBD PF02196.10 71 1.1e-06 21.6 0.2 1 4 0.0068 0.14 5.2 0.0 22 51 18 49 15 59 0.73 # 2 # 1303 # 1 # ID=15_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 15_1 - 434 RBD PF02196.10 71 1.1e-06 21.6 0.2 2 4 0.0088 0.19 4.9 0.0 22 58 52 88 49 93 0.73 # 2 # 1303 # 1 # ID=15_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 15_1 - 434 RBD PF02196.10 71 1.1e-06 21.6 0.2 3 4 0.0059 0.12 5.4 0.0 22 51 86 117 81 127 0.74 # 2 # 1303 # 1 # ID=15_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 15_1 - 434 RBD PF02196.10 71 1.1e-06 21.6 0.2 4 4 0.035 0.75 2.9 0.0 22 41 120 139 118 153 0.83 # 2 # 1303 # 1 # ID=15_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 3_1 - 458 RBD PF02196.10 71 2.5e-06 20.5 0.1 1 3 0.0033 0.071 6.2 0.0 22 52 8 40 6 52 0.77 # 1 # 1374 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.659 3_1 - 458 RBD PF02196.10 71 2.5e-06 20.5 0.1 2 3 0.0071 0.15 5.2 0.0 22 51 76 107 72 117 0.74 # 1 # 1374 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.659 3_1 - 458 RBD PF02196.10 71 2.5e-06 20.5 0.1 3 3 0.0063 0.13 5.3 0.0 22 54 110 142 107 155 0.73 # 1 # 1374 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.659 31_1 - 76 RBD PF02196.10 71 6.5e-06 19.1 0.0 1 2 0.00035 0.0075 9.3 0.0 22 52 8 40 5 49 0.74 # 2 # 229 # 1 # ID=31_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.689 31_1 - 76 RBD PF02196.10 71 6.5e-06 19.1 0.0 2 2 0.00034 0.0072 9.4 0.0 22 52 42 74 39 76 0.82 # 2 # 229 # 1 # ID=31_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.689 29_1 - 85 RBD PF02196.10 71 9.9e-06 18.5 0.0 1 2 0.00052 0.011 8.8 0.0 22 51 17 48 14 57 0.75 # 2 # 256 # -1 # ID=29_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.698 29_1 - 85 RBD PF02196.10 71 9.9e-06 18.5 0.0 2 2 0.00042 0.0088 9.1 0.0 22 52 51 83 47 85 0.82 # 2 # 256 # -1 # ID=29_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.698 7_3 - 306 AAA_19 PF13245.1 76 9.9e-09 28.2 0.4 1 1 3.1e-10 9.9e-09 28.2 0.4 2 75 156 227 155 228 0.85 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 3_4 - 210 AAA_19 PF13245.1 76 4.6e-05 16.4 0.1 1 1 6.7e-06 0.00021 14.3 0.0 20 56 11 45 9 63 0.88 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 14_2 - 133 AAA_19 PF13245.1 76 9.7e-05 15.4 0.7 1 1 4.8e-06 0.00015 14.7 0.2 15 46 6 33 3 59 0.82 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 17_2 - 211 AAA_19 PF13245.1 76 0.00066 12.7 3.4 1 2 0.0053 0.17 5.0 0.7 20 56 13 48 11 69 0.71 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 17_2 - 211 AAA_19 PF13245.1 76 0.00066 12.7 3.4 2 2 0.00076 0.024 7.7 0.1 2 37 73 107 69 133 0.80 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_1 - 890 AAA_10 PF12846.2 304 3.3e-20 65.9 0.0 1 1 1.9e-21 8.2e-20 64.6 0.0 2 303 522 802 521 803 0.90 # 46 # 2715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 7_1 - 534 AAA_10 PF12846.2 304 1.4e-09 31.0 0.2 1 2 1.1e-08 4.8e-07 22.7 0.0 1 43 140 182 140 289 0.83 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 7_1 - 534 AAA_10 PF12846.2 304 1.4e-09 31.0 0.2 2 2 0.001 0.043 6.4 0.0 214 300 353 447 324 451 0.74 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 3_4 - 210 AAA_10 PF12846.2 304 7.1e-05 15.6 0.0 1 1 2.3e-06 9.8e-05 15.1 0.0 11 51 11 53 9 137 0.90 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 7_3 - 306 ResIII PF04851.10 184 0.00062 12.8 0.1 1 1 1.4e-05 0.0017 11.4 0.1 6 69 151 217 146 259 0.75 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 7_3 - 306 Viral_helicase1 PF01443.13 234 4.4e-06 19.6 0.0 1 1 5e-08 6.4e-06 19.0 0.0 3 112 170 287 168 302 0.82 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 7_3 - 306 DUF2075 PF09848.4 352 3.2e-05 16.2 0.2 1 1 3.8e-07 4.9e-05 15.6 0.2 4 50 168 217 165 280 0.75 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 7_1 - 534 DEAD PF00270.24 169 0.0015 11.3 0.0 1 1 1.8e-05 0.0023 10.6 0.0 8 50 134 174 132 308 0.89 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 7_1 - 534 TrwB_AAD_bind PF10412.4 386 7.2e-129 422.9 0.0 1 1 6.7e-131 8.5e-129 422.7 0.0 2 386 127 510 126 510 0.96 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 7_3 - 306 AAA_11 PF13086.1 236 3.2e-06 20.1 0.5 1 2 1.1e-06 0.00014 14.7 0.1 2 61 149 206 148 246 0.74 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 7_3 - 306 AAA_11 PF13086.1 236 3.2e-06 20.1 0.5 2 2 0.0025 0.32 3.7 0.1 215 229 263 277 221 280 0.74 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 7_1 - 534 T4SS-DNA_transf PF02534.9 469 2.2e-22 72.4 0.0 1 2 0.075 9.6 -2.2 0.0 47 84 143 182 100 185 0.80 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 7_1 - 534 T4SS-DNA_transf PF02534.9 469 2.2e-22 72.4 0.0 2 2 4.1e-24 5.2e-22 71.2 0.0 217 448 285 513 225 525 0.83 # 41 # 1642 # 1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 17_2 - 211 ArgK PF03308.11 267 4.4e-05 15.6 0.3 1 1 5.4e-06 0.00035 12.6 0.3 37 84 11 55 2 123 0.82 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 3_4 - 210 ArgK PF03308.11 267 0.00027 13.0 0.0 1 1 1e-05 0.00066 11.7 0.0 37 68 9 40 1 46 0.85 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 7_3 - 306 PIF1 PF05970.9 364 7.7e-05 14.9 0.5 1 1 1e-06 0.00013 14.2 0.5 2 50 149 193 148 280 0.75 # 2645 # 3562 # 1 # ID=7_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.653 14_2 - 133 AAA_24 PF13479.1 213 2.3e-05 17.3 0.0 1 1 4.7e-07 3e-05 16.9 0.0 8 76 6 87 2 91 0.67 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 3_4 - 210 AAA_24 PF13479.1 213 0.00016 14.5 0.0 1 1 4.6e-06 0.00029 13.7 0.0 11 84 9 92 5 101 0.71 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 17_2 - 211 AAA_25 PF13481.1 194 4.1e-06 19.5 1.1 1 1 3.2e-06 0.0001 15.0 1.1 41 161 11 98 4 111 0.71 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 1_1 - 890 AAA_25 PF13481.1 194 1.2e-05 18.0 0.0 1 1 1.7e-06 5.5e-05 15.8 0.0 28 139 518 627 497 635 0.62 # 46 # 2715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 210 AAA_25 PF13481.1 194 2.8e-05 16.8 0.5 1 1 3.1e-06 9.7e-05 15.0 0.1 41 85 9 43 3 107 0.61 # 1962 # 2591 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 14_2 - 133 AAA_25 PF13481.1 194 3.2e-05 16.6 0.0 1 1 1.1e-06 3.5e-05 16.5 0.0 35 66 3 37 1 92 0.82 # 705 # 1103 # 1 # ID=14_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 17_2 - 211 AAA_28 PF13521.1 163 9.9e-05 15.6 0.8 1 2 0.00021 0.026 7.7 0.2 9 23 13 31 12 94 0.78 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 17_2 - 211 AAA_28 PF13521.1 163 9.9e-05 15.6 0.8 2 2 0.00043 0.054 6.7 0.0 50 94 133 180 69 201 0.79 # 79 # 711 # -1 # ID=17_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.656 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d9120f9f-ce77-4a0d-923f-cc19edd3e63d # Target file: checkm_output/bins/pGCA_001610795.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001610795.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d9120f9f-ce77-4a0d-923f-cc19edd3e63d checkm_output/bins/pGCA_001610795.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:41 2020 # [ok]