# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_142 - 601 TIGR00250 TIGR00250 130 0.00075 13.2 0.0 1 1 1.9e-05 0.004 10.9 0.0 50 93 532 574 526 587 0.84 # 126594 # 128396 # 1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.625 3_6 - 250 IstB_IS21 PF01695.12 178 1.9e-74 242.8 0.1 1 1 4.7e-76 2.5e-74 242.5 0.1 2 177 54 230 53 231 0.99 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_109 - 289 IstB_IS21 PF01695.12 178 1.3e-62 204.3 0.0 1 1 3.2e-64 1.6e-62 204.0 0.0 2 178 60 236 59 236 0.99 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 4_1 - 263 IstB_IS21 PF01695.12 178 1.3e-53 174.9 0.1 1 1 4e-55 2.1e-53 174.3 0.1 2 177 55 231 54 232 0.97 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_112 - 349 IstB_IS21 PF01695.12 178 0.0012 12.2 0.0 1 1 4e-05 0.0021 11.4 0.0 31 68 156 193 130 228 0.73 # 101040 # 102086 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 1_5 - 1413 TmoB PF06234.7 85 0.00088 13.1 1.7 1 1 3.2e-05 0.0066 10.3 0.1 9 56 1071 1117 1069 1129 0.86 # 3998 # 8236 # -1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.612 1_39 - 228 MipZ PF09140.6 261 3.9e-10 33.1 1.4 1 3 4.6e-08 9.7e-06 18.7 0.0 2 43 4 45 3 52 0.88 # 36679 # 37362 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.509 1_39 - 228 MipZ PF09140.6 261 3.9e-10 33.1 1.4 2 3 8e-06 0.0017 11.4 0.1 86 161 70 149 60 161 0.76 # 36679 # 37362 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.509 1_39 - 228 MipZ PF09140.6 261 3.9e-10 33.1 1.4 3 3 0.0076 1.6 1.6 0.0 187 257 149 216 141 218 0.71 # 36679 # 37362 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.509 1_39 - 228 YhjQ PF06564.7 244 1.2e-06 22.0 0.1 1 2 4.8e-05 0.01 9.1 0.0 7 42 8 43 3 53 0.86 # 36679 # 37362 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.509 1_39 - 228 YhjQ PF06564.7 244 1.2e-06 22.0 0.1 2 2 1.4e-05 0.0028 10.9 0.0 101 205 68 181 61 203 0.75 # 36679 # 37362 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.509 1_67 - 185 SSB PF00436.20 104 5.1e-43 139.2 0.1 1 1 3e-45 6.3e-43 138.9 0.1 1 104 4 108 4 108 0.99 # 64914 # 65468 # 1 # ID=1_67;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_125 - 581 UvrD_C_2 PF13538.1 104 4.6e-11 36.8 0.0 1 1 6.1e-13 1.3e-10 35.4 0.0 48 103 496 557 465 558 0.76 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 4_1 - 263 AAA_2 PF07724.9 171 0.00094 13.0 0.0 1 1 7e-06 0.0015 12.4 0.0 2 45 99 141 98 159 0.82 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_120 - 623 DUF87 PF01935.12 229 9.7e-06 19.4 0.0 1 1 9.8e-08 2e-05 18.4 0.0 22 62 175 214 162 260 0.80 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 3_6 - 250 AAA_22 PF13401.1 131 2.3e-05 18.5 0.1 1 1 2.5e-06 7.4e-05 16.9 0.0 3 45 99 136 95 161 0.82 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 4_1 - 263 AAA_22 PF13401.1 131 7.6e-05 16.8 0.3 1 1 3.1e-05 0.00093 13.3 0.1 6 28 102 124 97 139 0.79 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_115 - 826 AAA_22 PF13401.1 131 0.00019 15.5 0.0 1 1 2.9e-05 0.00087 13.4 0.0 3 29 471 497 462 531 0.76 # 102784 # 105261 # 1 # ID=1_115;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_137 - 774 AAA_22 PF13401.1 131 0.00041 14.4 0.0 1 1 0.00016 0.0046 11.0 0.0 5 25 33 53 30 74 0.88 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_109 - 289 AAA_22 PF13401.1 131 0.00069 13.7 0.0 1 1 0.0023 0.069 7.2 0.0 11 21 112 122 102 205 0.52 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_120 - 623 AAA_22 PF13401.1 131 0.0012 13.0 0.0 1 2 0.0018 0.052 7.6 0.0 5 28 177 200 173 270 0.83 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_120 - 623 AAA_22 PF13401.1 131 0.0012 13.0 0.0 2 2 0.055 1.6 2.8 0.0 72 106 455 489 415 503 0.72 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_125 - 581 AAA_22 PF13401.1 131 0.0012 12.9 0.0 1 1 0.0007 0.021 8.9 0.0 4 85 23 99 17 230 0.82 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_137 - 774 AAA_15 PF13175.1 415 0.00015 14.8 0.0 1 1 1.1e-06 0.00022 14.3 0.0 15 43 23 56 19 89 0.80 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 4_1 - 263 AAA_17 PF13207.1 121 6.2e-06 21.0 0.1 1 1 2.5e-07 1.7e-05 19.6 0.0 2 33 103 139 102 236 0.60 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_137 - 774 AAA_17 PF13207.1 121 0.00014 16.7 0.1 1 1 1.6e-05 0.0011 13.7 0.0 1 19 34 52 34 107 0.74 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 3_6 - 250 AAA_17 PF13207.1 121 0.0011 13.7 0.6 1 1 6.2e-05 0.0043 11.8 0.2 3 32 104 136 102 230 0.64 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_137 - 774 AAA_21 PF13304.1 303 0.00023 15.1 0.0 1 1 2.2e-06 0.00045 14.1 0.0 2 82 35 105 34 134 0.64 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_112 - 349 Miro PF08477.8 119 0.0022 12.4 0.0 1 1 1.9e-05 0.0039 11.6 0.0 2 25 175 198 174 227 0.74 # 101040 # 102086 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_1 - 263 MobB PF03205.9 140 0.00061 13.5 0.0 1 1 5.6e-06 0.0012 12.6 0.0 2 36 102 136 101 141 0.90 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_92 - 73 Prok_Ub PF14454.1 65 1.4e-30 98.7 0.0 1 1 7.7e-33 1.6e-30 98.6 0.0 1 65 3 67 3 67 0.97 # 86504 # 86722 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_39 - 228 LpxK PF02606.9 326 0.002 11.0 0.4 1 1 2.6e-05 0.0054 9.6 0.3 46 70 12 36 4 38 0.92 # 36679 # 37362 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.509 1_87 - 1044 Helicase_C PF00271.26 78 2.4e-06 21.3 0.0 1 1 3.7e-08 7.6e-06 19.7 0.0 6 76 889 961 884 963 0.86 # 79308 # 82439 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_109 - 289 PhoH PF02562.11 205 2.4e-06 20.9 0.0 1 1 6.2e-08 4.3e-06 20.0 0.0 13 48 99 134 92 166 0.89 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_6 - 250 PhoH PF02562.11 205 4.6e-06 19.9 0.0 1 1 1.2e-07 8.2e-06 19.1 0.0 14 48 95 129 85 158 0.84 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 4_1 - 263 PhoH PF02562.11 205 0.00011 15.5 0.0 1 1 2.4e-06 0.00017 14.8 0.0 16 48 97 129 85 168 0.81 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_6 - 250 AFG1_ATPase PF03969.11 362 4e-06 19.7 0.0 1 1 2.6e-08 5.4e-06 19.3 0.0 60 141 98 175 49 189 0.80 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_112 - 349 T2SE PF00437.15 272 1.7e-60 198.1 0.0 1 1 3.8e-62 2e-60 197.9 0.0 4 271 29 322 26 323 0.92 # 101040 # 102086 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 1_53 - 769 T2SE PF00437.15 272 1.6e-25 83.5 0.0 1 1 4.5e-27 2.4e-25 82.9 0.0 12 244 338 592 329 613 0.74 # 51392 # 53698 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.640 4_1 - 263 T2SE PF00437.15 272 6e-05 16.0 0.0 1 1 1.7e-06 8.6e-05 15.4 0.0 126 159 98 131 72 149 0.84 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_6 - 250 T2SE PF00437.15 272 0.00048 13.0 0.0 1 1 1.5e-05 0.00078 12.3 0.0 125 147 97 119 45 130 0.81 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 4_1 - 263 Zeta_toxin PF06414.7 201 2.3e-06 20.7 0.1 1 1 3.5e-08 3.6e-06 20.1 0.1 14 74 98 159 88 258 0.86 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_112 - 349 Zeta_toxin PF06414.7 201 0.00053 13.0 0.0 1 1 1.1e-05 0.0011 12.0 0.0 14 65 170 223 156 236 0.80 # 101040 # 102086 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 1_137 - 774 SMC_N PF02463.14 220 1.4e-06 21.6 0.1 1 2 1.5e-05 0.0031 10.7 0.0 24 44 32 52 20 65 0.88 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_137 - 774 SMC_N PF02463.14 220 1.4e-06 21.6 0.1 2 2 6e-05 0.013 8.7 0.2 97 212 260 769 212 772 0.81 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_39 - 228 VirC1 PF07015.6 231 5.9e-07 22.7 0.2 1 1 6.1e-09 1.3e-06 21.6 0.2 5 185 6 184 1 217 0.78 # 36679 # 37362 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.509 1_106 - 342 AAA_16 PF13191.1 185 2.3e-06 21.6 1.0 1 2 6e-06 0.00041 14.3 0.0 24 63 21 56 6 78 0.71 # 95177 # 96202 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.640 1_106 - 342 AAA_16 PF13191.1 185 2.3e-06 21.6 1.0 2 2 0.0071 0.49 4.3 0.1 143 174 83 114 72 129 0.75 # 95177 # 96202 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.640 4_1 - 263 AAA_16 PF13191.1 185 6.2e-06 20.2 0.9 1 1 1.7e-07 1.2e-05 19.3 0.3 25 63 101 139 85 235 0.81 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_6 - 250 AAA_16 PF13191.1 185 5.7e-05 17.1 0.2 1 1 2.5e-06 0.00017 15.5 0.2 25 79 101 157 92 233 0.72 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_137 - 774 AAA_23 PF13476.1 202 1.7e-07 25.7 0.0 1 1 3.3e-09 1.7e-07 25.7 0.0 11 37 21 50 5 53 0.74 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_115 - 826 AAA_23 PF13476.1 202 0.0009 13.5 0.8 1 1 4.2e-05 0.0022 12.2 0.0 19 46 472 499 459 535 0.79 # 102784 # 105261 # 1 # ID=1_115;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 4_1 - 263 AAA_23 PF13476.1 202 0.0011 13.2 0.0 1 1 3.4e-05 0.0018 12.6 0.0 22 42 103 123 73 144 0.87 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_53 - 769 AAA_23 PF13476.1 202 0.0029 11.8 0.0 1 1 9.9e-05 0.0051 11.0 0.0 20 43 470 493 456 540 0.85 # 51392 # 53698 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.640 4_1 - 263 AAA_18 PF13238.1 129 8.3e-05 16.9 0.4 1 1 4.3e-06 0.0003 15.1 0.1 1 19 103 124 103 142 0.79 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_120 - 623 AAA_18 PF13238.1 129 0.00038 14.7 0.0 1 1 1.4e-05 0.00094 13.5 0.0 3 52 181 230 180 260 0.79 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_137 - 774 AAA_18 PF13238.1 129 0.001 13.4 0.0 1 1 0.00011 0.0073 10.6 0.0 1 19 35 53 35 94 0.79 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_62 - 412 AAA_13 PF13166.1 712 0.0017 10.8 16.9 1 2 9.4e-06 0.002 10.5 2.1 382 459 163 240 159 243 0.83 # 60558 # 61793 # -1 # ID=1_62;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_62 - 412 AAA_13 PF13166.1 712 0.0017 10.8 16.9 2 2 0.0001 0.021 7.1 15.5 290 471 190 371 186 388 0.46 # 60558 # 61793 # -1 # ID=1_62;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_39 - 228 CbiA PF01656.18 195 2.6e-27 89.4 0.1 1 1 4.5e-29 4.7e-27 88.6 0.1 2 178 6 167 5 184 0.78 # 36679 # 37362 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.509 4_1 - 263 CbiA PF01656.18 195 0.0018 11.6 0.0 1 1 3.1e-05 0.0032 10.8 0.0 4 33 105 134 102 136 0.90 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_112 - 349 IIGP PF05049.8 376 0.00061 12.6 0.0 1 1 4.4e-06 0.00092 12.0 0.0 23 57 160 194 156 208 0.88 # 101040 # 102086 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_1 - 263 KaiC PF06745.8 227 7.2e-06 19.2 0.0 1 1 1e-07 1.1e-05 18.6 0.0 18 87 99 169 84 197 0.72 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_6 - 250 KaiC PF06745.8 227 0.00021 14.4 0.0 1 1 2.7e-06 0.00028 14.0 0.0 16 64 97 144 81 190 0.85 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 3_6 - 250 AAA_14 PF13173.1 128 0.0002 15.2 0.0 1 1 1.6e-06 0.00033 14.5 0.0 3 71 101 171 99 206 0.69 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_79 - 194 CSD PF00313.17 66 6.1e-16 52.0 0.1 1 1 4.6e-18 9.6e-16 51.3 0.1 1 64 1 61 1 63 0.95 # 73656 # 74237 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.605 1_137 - 774 AAA_29 PF13555.1 62 1.3e-05 18.6 0.0 1 1 7e-07 3.6e-05 17.2 0.0 25 42 34 51 22 59 0.86 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_53 - 769 AAA_29 PF13555.1 62 2.8e-05 17.5 0.0 1 1 1.2e-06 6.3e-05 16.4 0.0 23 51 469 496 463 507 0.80 # 51392 # 53698 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.640 1_112 - 349 AAA_29 PF13555.1 62 0.00088 12.8 0.0 1 1 4.2e-05 0.0022 11.5 0.0 22 43 171 192 162 199 0.84 # 101040 # 102086 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_1 - 263 AAA_29 PF13555.1 62 0.0014 12.1 0.0 1 1 5.2e-05 0.0027 11.2 0.0 21 42 99 119 79 123 0.80 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_106 - 342 AAA PF00004.24 132 3.1e-06 21.4 0.0 1 1 4.2e-07 2.2e-05 18.6 0.0 1 130 22 159 22 161 0.63 # 95177 # 96202 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.640 1_109 - 289 AAA PF00004.24 132 6.8e-06 20.3 0.0 1 1 3.6e-07 1.9e-05 18.8 0.0 3 70 110 178 108 208 0.81 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_6 - 250 AAA PF00004.24 132 1.5e-05 19.1 0.0 1 1 6.5e-07 3.4e-05 18.0 0.0 1 68 103 171 103 205 0.71 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 4_1 - 263 AAA PF00004.24 132 0.00012 16.2 0.0 1 1 3.7e-06 0.00019 15.6 0.0 1 37 103 142 103 177 0.73 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 4_1 - 263 Bac_DnaA PF00308.13 219 2.6e-07 24.4 0.0 1 1 6.2e-09 4.3e-07 23.7 0.0 37 133 103 197 90 203 0.82 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_109 - 289 Bac_DnaA PF00308.13 219 5.9e-07 23.3 0.0 1 1 4.2e-08 2.9e-06 21.0 0.0 38 140 109 208 95 218 0.88 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_6 - 250 Bac_DnaA PF00308.13 219 6.3e-05 16.6 0.0 1 1 1.3e-06 9.1e-05 16.1 0.0 35 133 101 197 80 203 0.81 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_125 - 581 UvrD_C PF13361.1 351 8.6e-36 118.0 0.0 1 1 1e-37 2.1e-35 116.7 0.0 2 350 257 561 256 562 0.84 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_142 - 601 PAPS_reduct PF01507.14 174 4.8e-08 26.9 0.0 1 1 4.2e-10 8.7e-08 26.1 0.0 5 148 29 215 25 220 0.86 # 126594 # 128396 # 1 # ID=1_142;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.625 4_1 - 263 Sigma54_activat PF00158.21 168 5.8e-06 19.8 0.0 1 1 1.7e-07 1.2e-05 18.8 0.0 17 57 95 135 85 156 0.80 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 3_6 - 250 Sigma54_activat PF00158.21 168 1.2e-05 18.8 0.0 1 1 3.3e-07 2.3e-05 17.9 0.0 20 121 98 191 83 200 0.86 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_106 - 342 Sigma54_activat PF00158.21 168 0.00029 14.3 0.0 1 2 0.00086 0.059 6.8 0.0 11 44 8 41 3 52 0.83 # 95177 # 96202 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.640 1_106 - 342 Sigma54_activat PF00158.21 168 0.00029 14.3 0.0 2 2 0.0028 0.19 5.1 0.0 97 151 93 143 77 157 0.79 # 95177 # 96202 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.640 1_87 - 1044 N6_Mtase PF02384.11 311 1.1e-06 21.8 0.0 1 1 1.5e-08 3.2e-06 20.3 0.0 17 138 35 143 32 150 0.77 # 79308 # 82439 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_120 - 623 TraG-D_C PF12696.2 128 2.8e-22 72.9 0.0 1 1 4.2e-24 4.3e-22 72.3 0.0 2 127 472 599 471 600 0.86 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_115 - 826 TraG-D_C PF12696.2 128 2.9e-05 17.9 0.0 1 1 9.1e-07 9.5e-05 16.2 0.0 17 75 690 745 681 766 0.85 # 102784 # 105261 # 1 # ID=1_115;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_39 - 228 AAA_31 PF13614.1 157 1.1e-06 22.6 0.4 1 2 0.0021 0.43 4.4 0.0 3 41 5 43 4 47 0.83 # 36679 # 37362 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.509 1_39 - 228 AAA_31 PF13614.1 157 1.1e-06 22.6 0.4 2 2 1.4e-06 0.00028 14.8 0.0 105 153 70 118 66 122 0.91 # 36679 # 37362 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.509 4_1 - 263 AAA_33 PF13671.1 143 2.2e-05 18.3 0.0 1 1 3.5e-07 3.7e-05 17.6 0.0 2 41 103 147 102 198 0.80 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_109 - 289 AAA_33 PF13671.1 143 0.0014 12.5 0.0 1 1 2.6e-05 0.0027 11.5 0.0 2 20 108 126 107 174 0.63 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_87 - 1044 Methyltransf_26 PF13659.1 117 1.7e-09 31.7 0.3 1 1 3.9e-11 8e-09 29.5 0.0 3 102 70 177 68 189 0.76 # 79308 # 82439 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_125 - 581 AAA_30 PF13604.1 196 3.7e-05 17.3 0.2 1 2 5.9e-05 0.0031 11.0 0.0 19 66 24 72 11 114 0.70 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_125 - 581 AAA_30 PF13604.1 196 3.7e-05 17.3 0.2 2 2 0.0074 0.39 4.2 0.0 98 133 197 231 154 282 0.81 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 4_1 - 263 AAA_30 PF13604.1 196 3.8e-05 17.3 0.1 1 1 1.3e-06 6.7e-05 16.4 0.1 17 56 99 138 91 152 0.88 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_112 - 349 AAA_30 PF13604.1 196 0.00041 13.9 0.0 1 1 1.5e-05 0.00078 13.0 0.0 8 50 163 203 161 213 0.81 # 101040 # 102086 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 1_109 - 289 AAA_30 PF13604.1 196 0.0009 12.8 0.0 1 2 0.0011 0.059 6.8 0.0 18 49 105 136 96 144 0.67 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_109 - 289 AAA_30 PF13604.1 196 0.0009 12.8 0.0 2 2 0.01 0.53 3.7 0.0 70 103 142 176 137 180 0.70 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_112 - 349 FtsK_SpoIIIE PF01580.13 205 1.9e-06 21.4 0.0 1 1 5e-08 3.4e-06 20.6 0.0 15 58 147 192 137 198 0.71 # 101040 # 102086 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 1_115 - 826 FtsK_SpoIIIE PF01580.13 205 0.0002 14.8 0.1 1 1 7.5e-06 0.00052 13.4 0.0 27 60 461 494 442 506 0.81 # 102784 # 105261 # 1 # ID=1_115;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_120 - 623 FtsK_SpoIIIE PF01580.13 205 0.0006 13.3 0.0 1 1 3e-05 0.0021 11.5 0.0 33 58 170 196 147 216 0.83 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_87 - 1044 MTS PF05175.9 170 0.00023 14.5 0.0 1 1 2.6e-06 0.00055 13.3 0.0 28 110 64 142 58 149 0.76 # 79308 # 82439 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_112 - 349 Dynamin_N PF00350.18 168 0.00045 14.0 0.0 1 1 3.4e-06 0.0007 13.4 0.0 1 21 175 195 175 206 0.89 # 101040 # 102086 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 2_15 - 239 RecA PF00154.16 323 0.0019 11.2 0.0 1 1 1.2e-05 0.0025 10.8 0.0 28 130 23 124 13 132 0.79 # 25685 # 26401 # -1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.721 1_137 - 774 ABC_tran PF00005.22 137 3.5e-06 21.3 1.6 1 2 1e-05 0.00053 14.2 0.0 12 31 33 52 22 68 0.86 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_137 - 774 ABC_tran PF00005.22 137 3.5e-06 21.3 1.6 2 2 0.064 3.3 1.9 0.9 96 96 293 293 184 499 0.62 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_120 - 623 ABC_tran PF00005.22 137 2.5e-05 18.5 0.0 1 2 2.2e-05 0.0012 13.2 0.0 11 58 176 223 173 286 0.73 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_120 - 623 ABC_tran PF00005.22 137 2.5e-05 18.5 0.0 2 2 0.034 1.8 2.8 0.0 79 113 524 570 462 573 0.77 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_115 - 826 ABC_tran PF00005.22 137 0.0018 12.5 0.0 1 1 7e-05 0.0036 11.5 0.0 12 57 473 519 461 584 0.84 # 102784 # 105261 # 1 # ID=1_115;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_53 - 769 ABC_tran PF00005.22 137 0.0019 12.4 0.0 1 1 7.6e-05 0.004 11.4 0.0 11 43 469 514 463 585 0.72 # 51392 # 53698 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.640 1_137 - 774 TIGR03263 TIGR03263 180 0.00023 14.5 0.2 1 2 0.00019 0.041 7.1 0.0 3 22 34 53 32 67 0.88 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_137 - 774 TIGR03263 TIGR03263 180 0.00023 14.5 0.2 2 2 0.0012 0.25 4.6 0.1 67 139 368 446 354 476 0.77 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 4_1 - 263 DAP3 PF10236.4 309 0.0013 11.6 0.0 1 1 9.2e-06 0.0019 11.0 0.0 21 68 98 145 79 167 0.73 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_125 - 581 AAA_19 PF13245.1 76 4.6e-08 26.7 4.4 1 2 5.4e-09 2.8e-07 24.2 0.8 7 75 22 92 17 93 0.82 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_125 - 581 AAA_19 PF13245.1 76 4.6e-08 26.7 4.4 2 2 0.032 1.7 2.5 0.1 30 60 311 341 286 357 0.76 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 4_1 - 263 AAA_19 PF13245.1 76 3.3e-06 20.8 0.2 1 1 1.7e-07 8.6e-06 19.4 0.1 13 57 103 144 93 171 0.77 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_109 - 289 AAA_19 PF13245.1 76 3.2e-05 17.6 1.8 1 1 1.2e-06 6.2e-05 16.7 0.2 17 46 112 137 102 168 0.86 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_6 - 250 AAA_19 PF13245.1 76 9.1e-05 16.1 0.0 1 1 5e-06 0.00026 14.7 0.0 13 48 103 134 87 160 0.76 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_115 - 826 AAA_10 PF12846.2 304 8.5e-18 58.7 0.1 1 1 6.3e-19 4.4e-17 56.4 0.1 2 303 473 754 472 755 0.85 # 102784 # 105261 # 1 # ID=1_115;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 1_120 - 623 AAA_10 PF12846.2 304 7.2e-12 39.2 0.0 1 1 1.8e-13 1.3e-11 38.4 0.0 2 297 177 547 176 552 0.70 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 4_1 - 263 AAA_10 PF12846.2 304 0.0008 12.8 0.1 1 1 4.4e-05 0.0031 10.9 0.0 4 35 103 134 101 203 0.88 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_125 - 581 AAA_12 PF13087.1 200 0.0017 11.7 0.0 1 2 0.032 6.6 -0.0 0.0 14 34 252 272 243 284 0.79 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_125 - 581 AAA_12 PF13087.1 200 0.0017 11.7 0.0 2 2 7.7e-05 0.016 8.5 0.0 144 195 504 557 470 562 0.71 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_96 - 276 ThiF PF00899.16 136 3.4e-17 56.5 0.3 1 1 6.8e-19 1.4e-16 54.5 0.3 4 116 19 135 16 154 0.84 # 89336 # 90163 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.624 3_6 - 250 ResIII PF04851.10 184 3.8e-05 17.5 0.0 1 1 5.5e-07 5.8e-05 16.9 0.0 21 48 81 123 50 146 0.76 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 4_1 - 263 ResIII PF04851.10 184 0.00014 15.7 0.0 1 1 1.8e-06 0.00018 15.3 0.0 22 65 89 142 25 163 0.76 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_109 - 289 Zot PF05707.7 193 0.00087 12.7 0.0 1 2 0.047 9.9 -0.5 0.0 4 33 66 95 64 109 0.83 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_109 - 289 Zot PF05707.7 193 0.00087 12.7 0.0 2 2 5.1e-05 0.011 9.2 0.0 5 88 110 175 106 186 0.68 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_62 - 412 DUF3584 PF12128.3 1201 0.00021 12.6 16.6 1 1 1.9e-06 0.00039 11.7 16.6 819 1005 180 368 171 375 0.66 # 60558 # 61793 # -1 # ID=1_62;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.591 1_125 - 581 Viral_helicase1 PF01443.13 234 7.3e-09 29.4 0.0 1 3 0.055 5.7 0.3 0.0 5 20 30 45 27 82 0.75 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_125 - 581 Viral_helicase1 PF01443.13 234 7.3e-09 29.4 0.0 2 3 0.013 1.4 2.3 0.0 51 106 181 237 162 279 0.80 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_125 - 581 Viral_helicase1 PF01443.13 234 7.3e-09 29.4 0.0 3 3 8.4e-09 8.7e-07 22.6 0.0 183 232 499 557 463 559 0.77 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_106 - 342 Viral_helicase1 PF01443.13 234 0.0019 11.6 0.0 1 1 2.6e-05 0.0027 11.1 0.0 2 41 23 69 22 114 0.75 # 95177 # 96202 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.640 3_6 - 250 DEAD PF00270.24 169 0.0023 11.4 0.3 1 1 3.6e-05 0.0075 9.7 0.0 10 33 96 119 81 134 0.82 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 3_6 - 250 DUF815 PF05673.8 250 8.2e-05 15.5 0.1 1 2 0.038 4 0.2 0.0 177 191 31 45 14 69 0.84 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 3_6 - 250 DUF815 PF05673.8 250 8.2e-05 15.5 0.1 2 2 5.1e-06 0.00053 12.9 0.0 51 136 98 191 64 199 0.77 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 4_1 - 263 DUF815 PF05673.8 250 0.0013 11.6 0.0 1 1 1.6e-05 0.0017 11.2 0.0 46 93 95 140 66 186 0.77 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_120 - 623 TrwB_AAD_bind PF10412.4 386 1.8e-20 66.8 0.1 1 2 6.3e-07 6.5e-05 15.6 0.0 7 52 168 213 163 221 0.92 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_120 - 623 TrwB_AAD_bind PF10412.4 386 1.8e-20 66.8 0.1 2 2 4.5e-17 4.7e-15 49.0 0.0 189 377 416 610 385 615 0.79 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_115 - 826 TrwB_AAD_bind PF10412.4 386 5.1e-05 15.9 0.1 1 1 1.5e-06 0.00016 14.3 0.0 3 52 460 509 458 516 0.92 # 102784 # 105261 # 1 # ID=1_115;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.600 3_6 - 250 Sigma54_activ_2 PF14532.1 138 9.9e-06 19.6 0.0 1 1 3.3e-07 1.7e-05 18.8 0.0 19 125 98 221 89 232 0.72 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 4_1 - 263 Sigma54_activ_2 PF14532.1 138 0.00038 14.5 0.0 1 1 1.4e-05 0.00073 13.5 0.0 20 47 99 126 91 171 0.78 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_109 - 289 Sigma54_activ_2 PF14532.1 138 0.00073 13.5 0.0 1 1 4.3e-05 0.0023 12.0 0.0 19 113 103 211 93 234 0.69 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_106 - 342 Sigma54_activ_2 PF14532.1 138 0.00084 13.3 0.0 1 1 3.8e-05 0.002 12.2 0.0 9 87 7 107 4 156 0.67 # 95177 # 96202 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.640 1_120 - 623 T4SS-DNA_transf PF02534.9 469 1.5e-10 34.2 0.0 1 2 1.7e-05 0.0036 9.8 0.0 44 115 170 251 131 265 0.71 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_120 - 623 T4SS-DNA_transf PF02534.9 469 1.5e-10 34.2 0.0 2 2 3e-09 6.3e-07 22.2 0.0 254 414 421 588 411 602 0.72 # 108574 # 110442 # 1 # ID=1_120;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_79 - 194 S1-like PF14444.1 58 0.00055 13.6 0.0 1 1 5.9e-06 0.0012 12.5 0.0 19 51 22 55 11 57 0.78 # 73656 # 74237 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.605 1_109 - 289 ArgK PF03308.11 267 0.0011 11.7 0.0 1 1 8.9e-06 0.0019 10.9 0.0 28 60 104 136 91 142 0.89 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_53 - 769 PIF1 PF05970.9 364 0.0021 10.9 0.0 1 1 1.6e-05 0.0033 10.3 0.0 12 51 459 498 454 504 0.89 # 51392 # 53698 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.640 4_1 - 263 RNA_helicase PF00910.17 107 5.2e-06 20.6 0.0 1 1 4.4e-08 9.2e-06 19.8 0.0 1 72 103 185 103 197 0.83 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 2_8 - 134 tRNA_anti-codon PF01336.20 75 4.8e-08 26.8 0.0 1 2 0.049 3.4 1.6 0.0 39 61 31 53 23 60 0.84 # 13077 # 13478 # -1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.672 2_8 - 134 tRNA_anti-codon PF01336.20 75 4.8e-08 26.8 0.0 2 2 1.6e-09 1.1e-07 25.6 0.0 4 60 46 104 43 117 0.76 # 13077 # 13478 # -1 # ID=2_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.672 2_13 - 1050 tRNA_anti-codon PF01336.20 75 3.8e-07 23.9 0.0 1 1 1.2e-08 8.1e-07 22.8 0.0 4 57 962 1017 948 1033 0.77 # 21131 # 24280 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.675 1_67 - 185 tRNA_anti-codon PF01336.20 75 0.00021 15.1 0.0 1 1 5e-06 0.00035 14.4 0.0 30 75 55 108 49 108 0.83 # 64914 # 65468 # 1 # ID=1_67;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_125 - 581 UvrD-helicase PF00580.16 315 3.1e-32 106.0 0.0 1 2 4.5e-12 9.4e-10 32.1 0.0 2 107 13 99 12 103 0.87 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 1_125 - 581 UvrD-helicase PF00580.16 315 3.1e-32 106.0 0.0 2 2 4e-24 8.4e-22 71.7 0.0 208 302 148 238 129 248 0.89 # 113021 # 114763 # 1 # ID=1_125;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.631 4_1 - 263 NACHT PF05729.7 166 0.0005 13.7 0.0 1 1 7.5e-06 0.0016 12.1 0.0 3 28 103 128 102 172 0.80 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 4_1 - 263 AAA_25 PF13481.1 194 2.4e-08 27.5 0.0 1 1 8e-10 4.2e-08 26.7 0.0 27 94 94 147 70 201 0.66 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_109 - 289 AAA_25 PF13481.1 194 0.0001 15.7 0.0 1 1 3.7e-06 0.00019 14.8 0.0 28 61 100 134 67 172 0.83 # 98137 # 99003 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 3_6 - 250 AAA_25 PF13481.1 194 0.00019 14.8 0.4 1 1 6.8e-06 0.00035 13.9 0.4 28 59 95 126 68 236 0.79 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_106 - 342 AAA_25 PF13481.1 194 0.0011 12.3 0.0 1 1 4.3e-05 0.0022 11.3 0.0 18 64 4 48 1 74 0.77 # 95177 # 96202 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.640 1_87 - 1044 SNF2_N PF00176.18 299 6.7e-14 45.3 0.0 1 1 1.9e-15 4e-13 42.7 0.0 24 189 528 683 511 709 0.77 # 79308 # 82439 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_137 - 774 AAA_28 PF13521.1 163 3.5e-05 17.7 0.2 1 1 1.8e-05 0.0012 12.7 0.0 2 20 35 53 34 64 0.89 # 122608 # 124929 # 1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.627 1_112 - 349 AAA_28 PF13521.1 163 0.0004 14.3 0.0 1 1 1.1e-05 0.00079 13.3 0.0 2 20 175 193 174 212 0.81 # 101040 # 102086 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 3_6 - 250 AAA_28 PF13521.1 163 0.0013 12.7 0.0 1 1 3.8e-05 0.0026 11.7 0.0 3 48 104 154 102 184 0.81 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 1_97 - 154 TOBE_2 PF08402.5 75 2.1e-05 18.4 0.0 1 1 2.1e-07 4.4e-05 17.4 0.0 32 65 112 142 103 151 0.91 # 90432 # 90893 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.660 1_106 - 342 AAA_5 PF07728.9 139 9.1e-06 19.4 0.0 1 2 0.00037 0.019 8.6 0.0 1 23 21 43 21 53 0.87 # 95177 # 96202 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.640 1_106 - 342 AAA_5 PF07728.9 139 9.1e-06 19.4 0.0 2 2 0.00042 0.022 8.4 0.0 63 139 87 153 70 153 0.84 # 95177 # 96202 # 1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.640 3_6 - 250 AAA_5 PF07728.9 139 0.00054 13.6 0.0 1 1 2e-05 0.001 12.7 0.0 1 48 102 146 102 196 0.64 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 4_1 - 263 AAA_5 PF07728.9 139 0.0013 12.4 0.0 1 1 4.9e-05 0.0025 11.5 0.0 2 23 103 124 102 160 0.81 # 87 # 875 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.639 1_53 - 769 AAA_5 PF07728.9 139 0.0017 12.0 0.0 1 1 9.6e-05 0.005 10.5 0.0 3 26 473 496 471 510 0.83 # 51392 # 53698 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.640 3_6 - 250 APS_kinase PF01583.15 157 0.00078 13.1 0.0 1 1 7.3e-06 0.0015 12.1 0.0 5 36 103 134 99 162 0.85 # 5266 # 6015 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.631 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e0fa0b19-94ff-49ec-a2f6-eb361078da6a # Target file: checkm_output/bins/pGCA_001606135.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001606135.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e0fa0b19-94ff-49ec-a2f6-eb361078da6a checkm_output/bins/pGCA_001606135.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:41 2020 # [ok]