# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_44 - 598 IstB_IS21 PF01695.12 178 7.4e-06 18.7 0.1 1 2 1.5e-06 0.00019 14.2 0.0 46 85 32 71 27 86 0.90 # 36295 # 38088 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.272 1_44 - 598 IstB_IS21 PF01695.12 178 7.4e-06 18.7 0.1 2 2 0.013 1.7 1.3 0.0 98 140 110 160 98 187 0.71 # 36295 # 38088 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.272 1_18 - 640 AIG1 PF04548.11 212 0.00034 13.0 0.0 1 1 6.6e-06 0.00084 11.7 0.0 32 62 51 81 43 108 0.84 # 12172 # 14091 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.402 1_36 - 142 SSB PF00436.20 104 1.5e-27 88.8 0.1 1 1 1.5e-29 1.9e-27 88.4 0.1 1 102 1 102 1 104 0.98 # 29957 # 30382 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.329 1_28 - 333 DUF87 PF01935.12 229 0.00014 14.9 0.1 1 1 4.5e-06 0.00029 13.9 0.1 28 48 165 185 157 193 0.84 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_39 - 923 DUF87 PF01935.12 229 0.0038 10.3 8.0 1 2 0.00015 0.0094 9.0 0.0 26 49 548 571 539 582 0.84 # 31655 # 34423 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_39 - 923 DUF87 PF01935.12 229 0.0038 10.3 8.0 2 2 0.01 0.66 2.9 0.2 101 174 639 710 633 730 0.72 # 31655 # 34423 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_28 - 333 Septin PF00735.13 281 9.5e-05 14.7 0.0 1 1 2.4e-06 0.00015 14.1 0.0 6 29 162 185 158 209 0.80 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_18 - 640 Septin PF00735.13 281 0.00035 12.9 0.1 1 1 9.7e-06 0.00062 12.0 0.1 7 77 6 82 3 91 0.68 # 12172 # 14091 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.402 1_28 - 333 AAA_22 PF13401.1 131 2.4e-05 17.8 0.0 1 1 3.9e-07 5e-05 16.7 0.0 4 41 160 208 156 257 0.71 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 2_26 - 1176 ATP_bind_1 PF03029.12 238 0.00029 13.7 0.1 1 2 0.016 1 2.1 0.0 1 14 129 142 129 148 0.91 # 25112 # 28639 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_26 - 1176 ATP_bind_1 PF03029.12 238 0.00029 13.7 0.1 2 2 0.00014 0.0086 8.8 0.1 133 180 251 297 217 362 0.62 # 25112 # 28639 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 1_28 - 333 ATP_bind_1 PF03029.12 238 0.00029 13.6 0.0 1 1 7.4e-06 0.00048 12.9 0.0 1 23 165 187 165 193 0.87 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 PRK PF00485.13 194 0.00078 12.3 0.0 1 1 1.2e-05 0.0015 11.4 0.0 2 24 163 185 162 221 0.83 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 AAA_17 PF13207.1 121 1.2e-05 19.5 0.1 1 1 4.7e-07 3e-05 18.1 0.1 2 49 163 207 162 299 0.83 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 2_26 - 1176 AAA_17 PF13207.1 121 0.0084 10.2 5.1 1 1 0.00016 0.01 10.0 0.4 1 19 126 144 126 270 0.50 # 25112 # 28639 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 1_52 - 94 AAA_21 PF13304.1 303 0.0032 10.6 11.7 1 1 3e-05 0.0038 10.4 11.7 80 162 6 88 2 92 0.93 # 42413 # 42694 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.191 1_18 - 640 Miro PF08477.8 119 2.2e-05 18.2 0.0 1 1 8.7e-07 5.6e-05 16.9 0.0 9 119 13 131 5 131 0.75 # 12172 # 14091 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.402 2_26 - 1176 Miro PF08477.8 119 0.00013 15.7 0.2 1 1 3.6e-05 0.0023 11.7 0.2 2 49 127 175 126 285 0.70 # 25112 # 28639 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 1_28 - 333 MobB PF03205.9 140 7.7e-05 15.7 0.6 1 2 2.3e-06 0.00029 13.8 0.0 3 27 163 187 161 199 0.81 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 MobB PF03205.9 140 7.7e-05 15.7 0.6 2 2 0.075 9.6 -0.8 0.1 20 44 296 320 294 321 0.80 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_56 - 1932 Helicase_C PF00271.26 78 3.2e-07 23.5 0.3 1 2 0.055 7.1 -0.1 0.0 14 40 1078 1104 1064 1106 0.84 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_56 - 1932 Helicase_C PF00271.26 78 3.2e-07 23.5 0.3 2 2 4.2e-08 5.3e-06 19.5 0.0 12 78 1515 1583 1508 1583 0.86 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_28 - 333 T2SE PF00437.15 272 4.3e-63 206.0 0.0 1 1 3.8e-65 4.9e-63 205.8 0.0 5 269 13 312 9 315 0.94 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 Zeta_toxin PF06414.7 201 0.00016 14.0 0.0 1 1 2.1e-06 0.00026 13.3 0.0 17 49 161 194 146 218 0.85 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 Arch_ATPase PF01637.13 234 0.00034 13.6 0.0 1 1 4.1e-06 0.00053 13.0 0.0 23 81 163 225 151 275 0.83 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 AAA_16 PF13191.1 185 6.1e-05 16.3 0.0 1 1 6.5e-07 8.3e-05 15.9 0.0 24 81 160 234 144 305 0.76 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 AAA_23 PF13476.1 202 0.0049 10.4 6.5 1 2 0.091 12 -0.6 0.3 106 106 110 110 7 158 0.50 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 AAA_23 PF13476.1 202 0.0049 10.4 6.5 2 2 8.8e-06 0.0011 12.5 1.5 22 37 163 178 160 184 0.89 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 AAA_18 PF13238.1 129 0.00038 14.0 1.3 1 1 5e-06 0.00064 13.3 0.0 1 18 163 180 163 227 0.76 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_9 - 187 CbiA PF01656.18 195 8.4e-08 25.1 0.1 1 2 1.5e-06 9.9e-05 15.0 0.0 1 24 3 26 3 31 0.92 # 5873 # 6433 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.241 1_9 - 187 CbiA PF01656.18 195 8.4e-08 25.1 0.1 2 2 0.00016 0.01 8.4 0.0 95 181 54 134 29 151 0.69 # 5873 # 6433 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.241 1_58 - 187 CbiA PF01656.18 195 1.5e-07 24.2 0.1 1 2 2.8e-06 0.00018 14.2 0.0 1 24 3 26 3 30 0.92 # 52104 # 52664 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.241 1_58 - 187 CbiA PF01656.18 195 1.5e-07 24.2 0.1 2 2 0.00016 0.01 8.4 0.0 95 181 54 134 29 151 0.69 # 52104 # 52664 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.241 1_44 - 598 KaiC PF06745.8 227 0.00017 14.0 0.0 1 2 8.5e-06 0.0011 11.3 0.0 16 70 30 83 23 186 0.86 # 36295 # 38088 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.272 1_44 - 598 KaiC PF06745.8 227 0.00017 14.0 0.0 2 2 0.058 7.4 -1.2 0.0 130 156 326 352 316 358 0.83 # 36295 # 38088 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.272 1_28 - 333 AAA_14 PF13173.1 128 6.1e-05 16.2 0.1 1 1 2.3e-06 0.00029 14.0 0.0 2 54 160 211 159 254 0.75 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 GvpD PF07088.6 484 0.00061 11.4 0.0 1 1 6.2e-06 0.00079 11.0 0.0 8 42 158 192 150 258 0.83 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_18 - 640 TIGR03594 TIGR03594 432 8.2e-08 24.5 0.4 1 3 0.044 5.7 -1.3 0.0 176 211 4 42 2 50 0.74 # 12172 # 14091 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.402 1_18 - 640 TIGR03594 TIGR03594 432 8.2e-08 24.5 0.4 2 3 2e-08 2.6e-06 19.6 0.1 31 123 51 135 47 154 0.87 # 12172 # 14091 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.402 1_18 - 640 TIGR03594 TIGR03594 432 8.2e-08 24.5 0.4 3 3 0.0069 0.88 1.4 0.0 305 346 197 238 188 264 0.69 # 12172 # 14091 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.402 1_28 - 333 AAA_29 PF13555.1 62 6e-05 15.8 0.0 1 1 2.2e-06 0.00014 14.6 0.0 22 40 159 177 142 184 0.85 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 2_26 - 1176 AAA_29 PF13555.1 62 0.00024 13.9 0.0 1 1 3.8e-05 0.0025 10.7 0.0 16 40 114 141 110 143 0.72 # 25112 # 28639 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 1_44 - 598 AAA PF00004.24 132 0.00013 15.4 0.1 1 2 2.5e-05 0.0032 10.9 0.0 2 105 37 166 36 177 0.66 # 36295 # 38088 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.272 1_44 - 598 AAA PF00004.24 132 0.00013 15.4 0.1 2 2 0.025 3.2 1.2 0.0 47 74 411 434 377 459 0.70 # 36295 # 38088 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.272 1_28 - 333 Sigma54_activat PF00158.21 168 0.00013 14.7 0.0 1 1 2.2e-06 0.00028 13.7 0.0 11 43 149 181 142 198 0.84 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_18 - 640 MMR_HSR1 PF01926.18 116 5.5e-08 26.1 0.1 1 1 1.7e-09 1.1e-07 25.1 0.1 4 116 8 129 5 129 0.68 # 12172 # 14091 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.402 2_26 - 1176 MMR_HSR1 PF01926.18 116 2.9e-05 17.3 0.1 1 1 1.9e-06 0.00012 15.3 0.1 2 105 127 266 126 283 0.61 # 25112 # 28639 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 2_26 - 1176 DUF258 PF03193.11 161 1.2e-05 17.8 0.0 1 1 2.8e-07 3.6e-05 16.3 0.0 24 96 110 182 89 199 0.73 # 25112 # 28639 # 1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.239 1_26 - 604 TraG-D_C PF12696.2 128 3.8e-28 91.2 0.0 1 2 1.9e-29 2.4e-27 88.6 0.0 2 127 406 528 405 529 0.89 # 21318 # 23129 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_26 - 604 TraG-D_C PF12696.2 128 3.8e-28 91.2 0.0 2 2 0.069 8.8 -0.5 0.0 52 70 580 601 560 603 0.74 # 21318 # 23129 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 333 NTPase_1 PF03266.10 168 0.00088 12.2 0.1 1 1 1.3e-05 0.0017 11.3 0.1 1 23 162 184 162 192 0.88 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_44 - 598 DnaB_C PF03796.10 259 2.1e-05 16.7 0.0 1 2 6.8e-07 8.7e-05 14.7 0.0 13 117 27 136 23 156 0.79 # 36295 # 38088 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.272 1_44 - 598 DnaB_C PF03796.10 259 2.1e-05 16.7 0.0 2 2 0.011 1.4 0.9 0.0 129 185 119 177 100 179 0.77 # 36295 # 38088 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.272 1_56 - 1932 Methyltransf_26 PF13659.1 117 7.4e-13 41.9 0.0 1 1 1.8e-14 2.3e-12 40.3 0.0 3 116 311 421 309 422 0.84 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_28 - 333 FtsK_SpoIIIE PF01580.13 205 2.1e-07 23.9 0.0 1 1 5.4e-09 3.5e-07 23.1 0.0 39 59 157 181 132 187 0.81 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_39 - 923 FtsK_SpoIIIE PF01580.13 205 0.00012 14.8 0.0 1 1 4.3e-06 0.00028 13.7 0.0 39 63 539 570 514 576 0.74 # 31655 # 34423 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_56 - 1932 MTS PF05175.9 170 6.8e-05 15.5 0.0 1 1 1.5e-06 0.00019 14.1 0.0 31 142 308 422 301 442 0.75 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_28 - 333 ABC_tran PF00005.22 137 4.4e-07 23.5 0.0 1 1 6.9e-09 8.9e-07 22.6 0.0 4 50 153 200 151 226 0.84 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_56 - 1932 Eco57I PF07669.6 106 1.7e-07 24.9 0.3 1 1 1.3e-09 1.7e-07 24.9 0.3 3 104 371 472 369 474 0.83 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_39 - 923 AAA_10 PF12846.2 304 3.4e-39 128.3 1.4 1 1 2.2e-40 9.4e-39 126.8 0.3 2 297 546 839 545 845 0.84 # 31655 # 34423 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 1_28 - 333 AAA_10 PF12846.2 304 6.8e-06 18.9 0.0 1 1 1.9e-07 8.3e-06 18.6 0.0 2 37 161 196 160 329 0.77 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_26 - 604 AAA_10 PF12846.2 304 8.3e-05 15.3 0.0 1 1 3e-06 0.00013 14.7 0.0 25 302 147 490 126 491 0.70 # 21318 # 23129 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_56 - 1932 ResIII PF04851.10 184 6.4e-10 32.4 9.7 1 1 1e-11 6.4e-10 32.4 9.7 2 161 999 1195 998 1242 0.57 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_28 - 333 ResIII PF04851.10 184 9.6e-05 15.5 0.0 1 1 3e-06 0.00019 14.5 0.0 3 64 145 201 140 237 0.70 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_18 - 640 GTP_EFTU_D2 PF03144.20 74 3.5e-09 30.0 0.0 1 1 5.6e-11 7.2e-09 29.0 0.0 3 60 265 316 263 323 0.90 # 12172 # 14091 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.402 2_5 - 260 RRF PF01765.14 165 0.005 9.6 6.3 1 2 4e-05 0.0051 9.5 0.2 128 155 165 192 155 199 0.84 # 1995 # 2774 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 2_5 - 260 RRF PF01765.14 165 0.005 9.6 6.3 2 2 0.0068 0.87 2.3 1.4 122 149 215 242 207 256 0.77 # 1995 # 2774 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_56 - 1932 DEAD PF00270.24 169 2.6e-08 26.8 0.6 1 2 6.2e-08 3.9e-06 19.7 0.1 2 107 1003 1109 1002 1244 0.78 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_56 - 1932 DEAD PF00270.24 169 2.6e-08 26.8 0.6 2 2 0.073 4.7 -0.1 0.0 120 150 1885 1917 1844 1924 0.73 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_28 - 333 DEAD PF00270.24 169 1.2e-05 18.1 0.0 1 1 3.5e-07 2.2e-05 17.2 0.0 3 69 149 212 147 243 0.69 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_26 - 604 TrwB_AAD_bind PF10412.4 386 2.2e-19 62.5 0.0 1 2 3.8e-05 0.0024 9.7 0.0 42 125 150 245 121 290 0.72 # 21318 # 23129 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_26 - 604 TrwB_AAD_bind PF10412.4 386 2.2e-19 62.5 0.0 2 2 1.2e-17 7.8e-16 50.8 0.0 185 380 345 542 307 544 0.84 # 21318 # 23129 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_28 - 333 TrwB_AAD_bind PF10412.4 386 0.00026 12.9 0.0 1 1 5.9e-06 0.00038 12.4 0.0 16 42 161 187 153 217 0.85 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_26 - 604 T4SS-DNA_transf PF02534.9 469 7.3e-107 351.0 0.1 1 1 8.5e-109 1.1e-106 350.4 0.1 2 461 93 565 82 571 0.84 # 21318 # 23129 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 1_18 - 640 GTP_EFTU PF00009.22 188 1.2e-59 194.2 0.4 1 1 1.4e-61 1.8e-59 193.6 0.4 2 186 2 238 1 240 0.92 # 12172 # 14091 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.402 1_28 - 333 RNA_helicase PF00910.17 107 0.00026 14.4 0.0 1 1 5.9e-06 0.00075 12.9 0.0 1 23 163 185 163 224 0.79 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 UPF0079 PF02367.12 123 3.6e-05 16.6 0.0 1 1 5.3e-07 6.8e-05 15.8 0.0 8 42 153 187 147 205 0.85 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_18 - 640 EFG_IV PF03764.13 120 1.6e-25 82.3 0.0 1 1 3.5e-27 4.5e-25 80.8 0.0 1 120 416 532 416 532 0.98 # 12172 # 14091 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.402 1_28 - 333 AAA_24 PF13479.1 213 0.00031 13.6 0.0 1 1 4.9e-06 0.00063 12.6 0.0 5 33 162 188 159 217 0.84 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_28 - 333 NACHT PF05729.7 166 4.4e-05 16.4 0.0 1 1 6e-07 7.6e-05 15.7 0.0 3 22 163 182 161 188 0.89 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_44 - 598 AAA_25 PF13481.1 194 1.1e-20 67.1 0.0 1 1 3.1e-22 2e-20 66.2 0.0 30 193 30 175 21 176 0.90 # 36295 # 38088 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.272 1_28 - 333 AAA_25 PF13481.1 194 0.00033 13.3 0.0 1 1 7.8e-06 0.0005 12.7 0.0 27 56 155 183 128 200 0.76 # 23806 # 24804 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_56 - 1932 SNF2_N PF00176.18 299 8.8e-21 67.1 4.2 1 3 1.7e-22 2.2e-20 65.8 0.4 24 204 1014 1274 954 1335 0.76 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_56 - 1932 SNF2_N PF00176.18 299 8.8e-21 67.1 4.2 2 3 0.0096 1.2 1.0 0.1 194 286 1461 1557 1444 1566 0.73 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 1_56 - 1932 SNF2_N PF00176.18 299 8.8e-21 67.1 4.2 3 3 0.084 11 -2.1 0.0 123 150 1872 1900 1837 1909 0.75 # 45993 # 51788 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.297 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6a914730-5706-4ef7-a610-3575e22fe659 # Target file: checkm_output/bins/pGCA_001587035.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001587035.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6a914730-5706-4ef7-a610-3575e22fe659 checkm_output/bins/pGCA_001587035.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:35 2020 # [ok]