# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_61 - 172 SSB PF00436.20 104 1.7e-41 133.5 0.5 1 1 1.5e-43 1.7e-41 133.5 0.5 1 104 12 113 12 113 0.98 # 48574 # 49089 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_93 - 670 DUF87 PF01935.12 229 0.027 7.3 9.3 1 3 0.03 3.4 0.5 1.8 115 208 91 163 34 188 0.55 # 76789 # 78798 # -1 # ID=1_93;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_93 - 670 DUF87 PF01935.12 229 0.027 7.3 9.3 2 3 3.9e-05 0.0045 9.9 0.1 18 108 251 355 235 463 0.68 # 76789 # 78798 # -1 # ID=1_93;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_93 - 670 DUF87 PF01935.12 229 0.027 7.3 9.3 3 3 0.052 5.9 -0.3 0.1 119 176 512 592 501 622 0.56 # 76789 # 78798 # -1 # ID=1_93;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_104 - 409 AAA_22 PF13401.1 131 0.00013 15.2 0.0 1 1 1.5e-05 0.00084 12.6 0.0 3 28 194 219 189 265 0.76 # 84689 # 85915 # -1 # ID=1_104;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_35 - 1008 AAA_22 PF13401.1 131 0.00056 13.2 0.0 1 1 5.9e-05 0.0034 10.6 0.0 13 122 501 627 499 634 0.64 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_35 - 1008 Methyltransf_11 PF08241.7 95 0.001 12.7 0.0 1 1 4.9e-05 0.0056 10.3 0.0 2 94 100 195 99 196 0.77 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_47 - 513 DNA_methylase PF00145.12 335 4.2e-54 176.9 0.5 1 2 0.039 4.5 -0.7 0.3 178 231 105 153 68 179 0.66 # 40113 # 41651 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_47 - 513 DNA_methylase PF00145.12 335 4.2e-54 176.9 0.5 2 2 3.7e-56 4.2e-54 176.9 0.5 2 334 185 497 184 498 0.89 # 40113 # 41651 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 1_36 - 292 N6_N4_Mtase PF01555.13 231 4.1e-07 22.8 3.4 1 1 6.7e-09 7.6e-07 21.9 3.4 2 158 86 271 85 287 0.70 # 31976 # 32851 # 1 # ID=1_36;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.350 1_109 - 160 AAA_17 PF13207.1 121 0.00028 14.8 0.6 1 1 4.1e-06 0.00047 14.1 0.6 4 77 3 78 1 153 0.63 # 87988 # 88467 # -1 # ID=1_109;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_35 - 1008 Helicase_C PF00271.26 78 6.2e-08 25.6 0.1 1 1 3.6e-09 4.1e-07 23.0 0.0 10 77 855 924 849 925 0.89 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_104 - 409 T2SE PF00437.15 272 7.4e-30 96.8 0.0 1 1 9.2e-32 1e-29 96.3 0.0 25 257 96 329 74 340 0.84 # 84689 # 85915 # -1 # ID=1_104;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_104 - 409 AAA_16 PF13191.1 185 0.00028 14.0 0.0 1 1 5.2e-06 0.00059 12.9 0.0 14 63 186 235 181 311 0.80 # 84689 # 85915 # -1 # ID=1_104;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_93 - 670 AAA_14 PF13173.1 128 7.2e-05 15.8 0.2 1 2 8.8e-05 0.01 8.9 0.0 2 46 256 299 255 363 0.83 # 76789 # 78798 # -1 # ID=1_93;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_93 - 670 AAA_14 PF13173.1 128 7.2e-05 15.8 0.2 2 2 0.0029 0.33 4.0 0.1 26 105 453 543 440 575 0.60 # 76789 # 78798 # -1 # ID=1_93;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_78 - 121 tRNA-synt_1 PF00133.17 601 0.00018 12.6 1.2 1 1 1.8e-06 0.00021 12.4 1.2 89 182 12 103 7 117 0.91 # 60569 # 60931 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.394 1_93 - 670 AAA_29 PF13555.1 62 0.00055 12.6 0.0 1 1 1.5e-05 0.0017 11.0 0.0 24 40 257 273 248 289 0.79 # 76789 # 78798 # -1 # ID=1_93;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_104 - 409 Sigma54_activat PF00158.21 168 0.00055 12.5 0.0 1 1 1.3e-05 0.0014 11.2 0.0 10 74 183 243 175 269 0.77 # 84689 # 85915 # -1 # ID=1_104;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_35 - 1008 N6_Mtase PF02384.11 311 2.1e-13 43.0 0.2 1 1 1.7e-14 1.9e-12 39.9 0.1 18 223 67 237 55 261 0.71 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_88 - 544 TraG-D_C PF12696.2 128 4.2e-42 136.2 0.6 1 1 8e-44 9.1e-42 135.1 0.1 1 128 297 421 297 421 0.91 # 71653 # 73284 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_74 - 375 Rho_RNA_bind PF07497.7 78 0.00054 12.7 0.0 1 1 1.2e-05 0.0013 11.4 0.0 26 52 111 137 94 162 0.76 # 55823 # 56947 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_35 - 1008 Methyltransf_26 PF13659.1 117 6e-15 48.4 0.0 1 1 9.3e-17 1.1e-14 47.6 0.0 2 117 96 200 95 200 0.84 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_35 - 1008 MTS PF05175.9 170 9.7e-11 34.4 0.0 1 1 2e-12 2.3e-10 33.2 0.0 20 149 83 208 77 229 0.79 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_104 - 409 ABC_tran PF00005.22 137 0.00011 15.6 0.0 1 1 2e-06 0.00023 14.6 0.0 13 67 197 251 191 337 0.69 # 84689 # 85915 # -1 # ID=1_104;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_35 - 1008 Eco57I PF07669.6 106 5.3e-07 23.1 4.0 1 1 7.9e-09 9e-07 22.4 0.2 1 102 152 249 152 253 0.68 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_68 - 159 DUF43 PF01861.11 243 9.3e-05 14.5 0.1 1 1 1.1e-06 0.00012 14.2 0.1 67 95 38 67 26 101 0.73 # 52417 # 52893 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 1_93 - 670 AAA_10 PF12846.2 304 1.1e-44 146.2 0.8 1 2 0.096 11 -1.6 0.0 127 134 142 149 29 230 0.54 # 76789 # 78798 # -1 # ID=1_93;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_93 - 670 AAA_10 PF12846.2 304 1.1e-44 146.2 0.8 2 2 1.7e-46 1.9e-44 145.3 0.2 1 301 256 584 256 587 0.87 # 76789 # 78798 # -1 # ID=1_93;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_109 - 160 Viral_helicase1 PF01443.13 234 0.00033 13.3 0.0 1 1 3.7e-06 0.00042 12.9 0.0 5 38 5 39 1 80 0.71 # 87988 # 88467 # -1 # ID=1_109;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_35 - 1008 DEAD PF00270.24 169 1.8e-12 40.1 0.5 1 2 1.4e-13 1.6e-11 37.1 0.2 2 167 480 636 479 638 0.74 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_35 - 1008 DEAD PF00270.24 169 1.8e-12 40.1 0.5 2 2 0.028 3.1 0.3 0.0 64 110 839 894 832 906 0.69 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_88 - 544 TrwB_AAD_bind PF10412.4 386 2e-29 95.4 0.0 1 1 2.9e-30 3.3e-28 91.4 0.0 13 380 38 434 31 437 0.82 # 71653 # 73284 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_88 - 544 T4SS-DNA_transf PF02534.9 469 2.1e-121 398.7 1.1 1 1 2.9e-123 3.3e-121 398.1 1.1 47 466 43 467 23 472 0.94 # 71653 # 73284 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_35 - 1008 Methyltransf_23 PF13489.1 161 8.6e-05 15.4 0.0 1 1 2.3e-06 0.00026 13.8 0.0 7 133 80 239 74 251 0.69 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_109 - 160 RNA_helicase PF00910.17 107 0.00022 14.5 0.0 1 1 4.7e-06 0.00053 13.3 0.0 2 88 2 91 1 102 0.78 # 87988 # 88467 # -1 # ID=1_109;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_61 - 172 tRNA_anti-codon PF01336.20 75 6.3e-07 22.3 0.2 1 1 7.7e-09 8.8e-07 21.9 0.2 27 72 57 110 15 113 0.83 # 48574 # 49089 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_35 - 1008 SNF2_N PF00176.18 299 1.2e-21 69.8 0.4 1 1 3.7e-23 4.2e-21 68.0 0.4 30 294 497 797 492 802 0.80 # 27975 # 30998 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_68 - 159 Spermine_synth PF01564.12 246 0.00055 12.0 0.2 1 1 7.8e-06 0.00089 11.3 0.2 98 158 36 98 30 109 0.74 # 52417 # 52893 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.308 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/adf630b6-673b-41ae-9542-b317c9b20843 # Target file: checkm_output/bins/pGCA_001578205.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001578205.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/adf630b6-673b-41ae-9542-b317c9b20843 checkm_output/bins/pGCA_001578205.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:30 2020 # [ok]