# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 720 Mg_chelatase PF01078.16 207 0.0001 13.3 0.0 1 1 3.9e-06 0.00017 12.5 0.0 25 105 506 587 490 610 0.72 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_11 - 193 RuvB_C PF05491.8 76 0.00035 12.0 0.4 1 2 0.038 1.7 0.2 0.1 55 67 121 133 117 139 0.82 # 9869 # 10447 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 1_11 - 193 RuvB_C PF05491.8 76 0.00035 12.0 0.4 2 2 8.6e-05 0.0039 8.7 0.0 6 43 145 178 142 182 0.86 # 9869 # 10447 # 1 # ID=1_11;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 2_2 - 720 ABC_ATPase PF09818.4 448 6.2e-06 16.7 0.1 1 2 0.04 1.8 -1.3 0.0 242 263 500 522 496 533 0.79 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 ABC_ATPase PF09818.4 448 6.2e-06 16.7 0.1 2 2 4.8e-07 2.1e-05 14.9 0.0 298 365 589 657 582 682 0.85 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 NB-ARC PF00931.17 287 5.6e-05 13.8 0.0 1 1 4.2e-06 0.00019 12.1 0.0 18 43 502 527 488 547 0.83 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_6 - 324 NmrA PF05368.8 233 5.6e-06 17.5 0.6 1 1 2.9e-07 1.3e-05 16.3 0.6 1 52 152 205 152 275 0.90 # 4511 # 5482 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 2_2 - 720 AAA_22 PF13401.1 131 8e-09 27.5 0.2 1 1 2.8e-09 6.2e-08 24.7 0.2 4 120 503 669 499 677 0.65 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_13 - 741 AAA_22 PF13401.1 131 1e-07 23.9 0.1 1 1 3.1e-08 7e-07 21.3 0.0 8 100 29 151 26 171 0.72 # 11456 # 13678 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.275 1_14 - 601 N6_N4_Mtase PF01555.13 231 2.1e-37 120.5 0.0 1 1 3.3e-38 1.5e-36 117.8 0.0 1 227 128 476 128 481 0.84 # 13671 # 15473 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.272 2_2 - 720 AAA_17 PF13207.1 121 3.8e-07 22.8 0.1 1 1 7.3e-08 1.1e-06 21.3 0.1 2 32 506 538 505 654 0.58 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 7_1 - 209 AAA_17 PF13207.1 121 9.4e-05 15.0 0.8 1 1 9.4e-06 0.00014 14.5 0.8 23 112 24 121 20 175 0.80 # 59 # 685 # 1 # ID=7_1;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 6_1 - 225 AAA_17 PF13207.1 121 0.00018 14.1 1.5 1 1 2e-05 0.00029 13.4 1.5 22 113 23 122 15 206 0.81 # 60 # 734 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 2_2 - 720 AAA_21 PF13304.1 303 4.4e-09 28.4 4.3 1 1 9.8e-11 4.4e-09 28.4 4.3 1 297 505 672 505 678 0.77 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 MobB PF03205.9 140 1.6e-05 16.5 0.0 1 1 9.9e-07 4.4e-05 15.0 0.0 3 27 506 530 504 536 0.88 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_6 - 324 ADH_zinc_N PF00107.21 130 4.5e-17 53.6 0.0 1 1 2.1e-18 9.7e-17 52.5 0.0 1 117 160 270 160 285 0.90 # 4511 # 5482 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_13 - 741 Helicase_C PF00271.26 78 0.0001 13.9 0.1 1 2 0.0034 0.15 3.8 0.1 20 63 153 224 124 259 0.83 # 11456 # 13678 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.275 1_13 - 741 Helicase_C PF00271.26 78 0.0001 13.9 0.1 2 2 0.00029 0.013 7.2 0.0 35 76 306 347 260 349 0.86 # 11456 # 13678 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.275 2_2 - 720 T2SE PF00437.15 272 2e-05 15.3 0.0 1 1 7.8e-07 3.5e-05 14.5 0.0 59 163 435 545 421 550 0.77 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 Zeta_toxin PF06414.7 201 8.8e-06 16.7 0.0 1 1 3.4e-07 1.5e-05 15.9 0.0 16 57 503 553 490 706 0.86 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 SMC_N PF02463.14 220 1.1e-11 36.2 2.0 1 1 1.4e-11 6.1e-10 30.4 2.0 24 212 503 687 492 693 0.59 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_16 PF13191.1 185 7e-06 17.9 0.0 1 1 4e-07 1.8e-05 16.6 0.0 25 52 504 532 489 669 0.72 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_18 PF13238.1 129 1.9e-06 20.0 0.3 1 1 5.2e-07 2.3e-05 16.5 0.3 1 23 506 554 506 686 0.71 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_14 PF13173.1 128 8.9e-06 17.4 1.7 1 2 4e-06 0.00018 13.2 0.3 4 70 505 584 502 605 0.70 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_14 PF13173.1 128 8.9e-06 17.4 1.7 2 2 0.0091 0.41 2.4 0.1 53 98 623 672 604 707 0.62 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_29 PF13555.1 62 7.2e-06 17.3 0.0 1 1 3.7e-07 1.7e-05 16.1 0.0 19 39 500 519 490 539 0.85 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA PF00004.24 132 1.3e-06 20.5 0.9 1 1 8.9e-07 4e-05 15.6 0.9 2 114 507 676 506 682 0.69 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 Sigma54_activat PF00158.21 168 2.5e-05 15.6 0.0 1 1 1.1e-06 5.1e-05 14.6 0.0 9 51 490 532 483 558 0.78 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 MMR_HSR1 PF01926.18 116 5.3e-05 15.0 0.3 1 1 5e-06 0.00023 13.0 0.1 2 37 506 541 505 585 0.80 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 DUF258 PF03193.11 161 5.3e-07 20.7 0.0 1 1 2.4e-08 1.1e-06 19.7 0.0 19 69 485 537 471 541 0.78 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 NTPase_1 PF03266.10 168 5.7e-05 14.6 0.2 1 2 0.00046 0.021 6.3 0.0 2 27 506 531 505 535 0.84 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 NTPase_1 PF03266.10 168 5.7e-05 14.6 0.2 2 2 0.00092 0.042 5.3 0.1 85 154 624 693 613 704 0.78 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_33 PF13671.1 143 0.00012 13.7 0.0 1 1 4.9e-06 0.00022 12.9 0.0 2 21 506 525 505 562 0.82 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_14 - 601 Methyltransf_26 PF13659.1 117 8.8e-06 17.6 0.0 1 2 0.00013 0.0059 8.4 0.0 65 113 122 185 100 188 0.77 # 13671 # 15473 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.272 1_14 - 601 Methyltransf_26 PF13659.1 117 8.8e-06 17.6 0.0 2 2 0.00043 0.019 6.8 0.0 4 22 437 459 434 502 0.80 # 13671 # 15473 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.272 2_2 - 720 AAA_30 PF13604.1 196 0.00011 13.6 0.0 1 1 5.4e-06 0.00024 12.5 0.0 13 48 498 533 496 549 0.87 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 ABC_tran PF00005.22 137 6.1e-35 112.3 0.1 1 1 2.5e-36 1.1e-34 111.4 0.1 1 137 493 643 493 643 0.96 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_14 - 601 Cons_hypoth95 PF03602.10 183 1.2e-06 19.8 0.2 1 2 1.7e-06 7.5e-05 13.9 0.1 106 128 119 141 87 156 0.76 # 13671 # 15473 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.272 1_14 - 601 Cons_hypoth95 PF03602.10 183 1.2e-06 19.8 0.2 2 2 0.004 0.18 2.9 0.0 42 56 433 447 420 453 0.80 # 13671 # 15473 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.272 1_6 - 324 NAD_binding_10 PF13460.1 183 8e-06 17.7 0.1 1 1 2.5e-07 1.1e-05 17.2 0.1 1 38 152 192 152 241 0.87 # 4511 # 5482 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 2_2 - 720 AAA_10 PF12846.2 304 6e-08 24.2 0.6 1 3 4.5e-07 2e-05 15.9 0.1 4 31 506 533 504 538 0.81 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_10 PF12846.2 304 6e-08 24.2 0.6 2 3 0.0047 0.21 2.6 0.0 174 245 534 600 529 602 0.66 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_10 PF12846.2 304 6e-08 24.2 0.6 3 3 0.0052 0.24 2.5 0.0 220 271 632 682 620 705 0.85 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_13 - 741 ResIII PF04851.10 184 1.6e-18 58.9 1.5 1 2 3.6e-20 1.6e-18 58.9 1.5 2 183 2 175 1 176 0.77 # 11456 # 13678 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.275 1_13 - 741 ResIII PF04851.10 184 1.6e-18 58.9 1.5 2 2 0.014 0.62 1.6 1.1 49 145 198 294 191 310 0.66 # 11456 # 13678 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.275 1_6 - 324 Epimerase PF01370.16 236 0.00015 13.0 0.0 1 1 5e-06 0.00023 12.4 0.0 1 39 152 191 152 216 0.80 # 4511 # 5482 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_13 - 741 DEAD PF00270.24 169 4.6e-11 34.2 0.0 1 1 2.2e-12 9.7e-11 33.2 0.0 15 163 26 175 5 183 0.70 # 11456 # 13678 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.275 2_2 - 720 Sigma54_activ_2 PF14532.1 138 0.00014 13.8 0.0 1 1 7.5e-06 0.00034 12.5 0.0 18 49 500 531 490 562 0.76 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_6 - 324 DapB_N PF01113.15 124 4.3e-06 18.5 0.2 1 2 0.042 1.9 0.2 0.0 92 103 121 132 115 142 0.84 # 4511 # 5482 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 1_6 - 324 DapB_N PF01113.15 124 4.3e-06 18.5 0.2 2 2 1e-06 4.6e-05 15.1 0.2 3 97 152 242 150 250 0.78 # 4511 # 5482 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.320 2_2 - 720 RNA_helicase PF00910.17 107 1.3e-05 17.2 0.2 1 1 1.3e-06 5.7e-05 15.1 0.1 2 53 507 561 506 565 0.77 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 1_13 - 741 Herpes_ori_bp PF02399.10 824 3.5e-06 16.9 0.0 1 2 6.3e-07 2.8e-05 13.9 0.0 50 84 26 60 7 62 0.78 # 11456 # 13678 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.275 1_13 - 741 Herpes_ori_bp PF02399.10 824 3.5e-06 16.9 0.0 2 2 0.0091 0.41 0.2 0.0 612 672 207 266 89 304 0.80 # 11456 # 13678 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.275 2_2 - 720 NACHT PF05729.7 166 6.4e-05 14.4 0.2 1 1 4e-06 0.00018 13.0 0.0 3 26 506 529 504 542 0.84 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_25 PF13481.1 194 1.5e-05 16.2 0.0 1 2 2.7e-06 0.00012 13.3 0.0 29 51 499 521 482 541 0.84 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_25 PF13481.1 194 1.5e-05 16.2 0.0 2 2 0.029 1.3 0.1 0.0 131 188 621 672 591 673 0.68 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_5 PF07728.9 139 9.1e-06 17.2 0.0 1 2 1.6e-05 0.00073 11.1 0.0 3 26 507 530 506 542 0.82 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 2_2 - 720 AAA_5 PF07728.9 139 9.1e-06 17.2 0.0 2 2 0.0036 0.16 3.5 0.0 60 83 621 650 597 704 0.70 # 1085 # 3244 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.284 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/56a4deb8-e87e-4c4e-a90c-1d1f112de186 # Target file: checkm_output/bins/pGCA_001558795.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001558795.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/56a4deb8-e87e-4c4e-a90c-1d1f112de186 checkm_output/bins/pGCA_001558795.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:27 2020 # [ok]