# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_17 - 184 Thymidylate_kin PF02223.12 186 6.7e-05 13.5 0.0 1 1 3.1e-06 9e-05 13.0 0.0 6 48 88 132 86 170 0.79 # 16004 # 16555 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.366 1_22 - 448 3HCDH_N PF02737.13 180 0.0002 12.2 0.3 1 1 1.5e-05 0.00043 11.1 0.0 2 55 167 221 166 246 0.80 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 GIDA PF01134.17 392 7.1e-07 19.4 3.5 1 2 1.6e-07 4.7e-06 16.8 2.7 1 180 5 167 5 244 0.66 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 GIDA PF01134.17 392 7.1e-07 19.4 3.5 2 2 0.014 0.41 0.5 0.1 97 150 204 259 187 291 0.84 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 Pyr_redox_2 PF07992.9 201 5.8e-36 115.4 1.5 1 1 2.5e-35 7.3e-34 108.5 1.5 1 198 5 301 5 303 0.94 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 Trp_halogenase PF04820.9 454 4.6e-06 16.6 0.2 1 2 3.6e-05 0.001 8.8 0.1 1 36 5 37 5 41 0.90 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 Trp_halogenase PF04820.9 454 4.6e-06 16.6 0.2 2 2 0.00029 0.0085 5.8 0.0 155 217 207 267 202 290 0.79 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_29 - 100 ADH_zinc_N_2 PF13602.1 127 2.8e-17 55.0 0.0 1 1 3.2e-18 3.1e-17 54.9 0.0 27 127 3 95 1 95 0.80 # 27585 # 27884 # -1 # ID=1_29;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.313 1_20 - 338 ADH_zinc_N_2 PF13602.1 127 2.1e-16 52.1 0.1 1 1 4.5e-17 4.4e-16 51.1 0.1 1 127 203 333 203 333 0.86 # 17992 # 19005 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 142 ADH_zinc_N_2 PF13602.1 127 1e-07 24.1 0.0 1 1 1.1e-08 1.1e-07 24.0 0.0 2 109 8 120 7 139 0.72 # 10457 # 10882 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.315 1_20 - 338 ADH_zinc_N PF00107.21 130 8e-36 113.6 0.2 1 1 1.3e-36 1.2e-35 113.1 0.2 1 128 171 298 171 301 0.96 # 17992 # 19005 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 142 ADH_zinc_N PF00107.21 130 6.1e-21 65.5 0.1 1 1 7.9e-22 7.7e-21 65.2 0.1 29 128 3 100 1 102 0.97 # 10457 # 10882 # 1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.315 1_1 - 199 ADH_zinc_N PF00107.21 130 3.3e-11 34.0 0.1 1 1 6.2e-12 6e-11 33.2 0.1 1 44 156 198 156 199 0.88 # 2 # 598 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.362 1_22 - 448 NAD_binding_8 PF13450.1 68 2.8e-05 15.3 0.0 1 1 2e-06 5.8e-05 14.3 0.0 2 60 9 67 8 71 0.74 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 FAD_binding_3 PF01494.14 356 0.00024 11.3 0.0 1 1 3.2e-05 0.00093 9.4 0.0 2 56 4 62 3 312 0.79 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 HI0933_like PF03486.9 409 4.3e-07 19.8 0.4 1 3 0.00012 0.0034 6.9 0.0 1 36 4 39 4 45 0.93 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 HI0933_like PF03486.9 409 4.3e-07 19.8 0.4 2 3 0.038 1.1 -1.3 0.0 145 166 120 140 105 142 0.81 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 HI0933_like PF03486.9 409 4.3e-07 19.8 0.4 3 3 2.3e-05 0.00067 9.3 0.0 113 165 209 260 204 294 0.81 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 FAD_binding_2 PF00890.19 417 3.3e-09 27.1 0.2 1 2 2.4e-07 6.8e-06 16.2 0.1 1 35 5 39 5 45 0.89 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 FAD_binding_2 PF00890.19 417 3.3e-09 27.1 0.2 2 2 6e-05 0.0017 8.3 0.0 368 402 272 300 268 305 0.90 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_20 - 338 Ubie_methyltran PF01209.13 233 0.00012 12.4 0.0 1 1 7.7e-06 0.00022 11.5 0.0 25 84 207 264 199 300 0.87 # 17992 # 19005 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_22 - 448 Pyr_redox_3 PF13738.1 203 1.1e-11 36.3 0.2 1 2 4.4e-06 0.00013 13.2 0.0 4 176 10 173 6 200 0.63 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 Pyr_redox_3 PF13738.1 203 1.1e-11 36.3 0.2 2 2 3e-08 8.7e-07 20.3 0.0 84 160 208 286 194 300 0.76 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_20 - 338 2-Hacid_dh_C PF02826.14 178 8.2e-05 12.9 0.1 1 1 5.4e-06 0.00016 12.0 0.1 35 81 160 206 147 214 0.87 # 17992 # 19005 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_22 - 448 Lycopene_cycl PF05834.7 374 1.1e-05 15.7 0.0 1 2 0.0019 0.054 3.4 0.0 1 34 5 36 5 46 0.86 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 Lycopene_cycl PF05834.7 374 1.1e-05 15.7 0.0 2 2 1.8e-05 0.00054 10.0 0.0 91 143 209 262 200 283 0.78 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_20 - 338 ELFV_dehydrog PF00208.16 244 2.5e-07 21.6 0.3 1 1 1.6e-08 4.5e-07 20.8 0.3 31 88 160 217 136 286 0.80 # 17992 # 19005 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_22 - 448 FAD_oxidored PF12831.2 428 3.6e-05 14.0 0.0 1 2 0.0001 0.0029 7.8 0.0 1 36 5 40 5 58 0.89 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 FAD_oxidored PF12831.2 428 3.6e-05 14.0 0.0 2 2 0.0012 0.034 4.2 0.0 91 148 207 259 183 329 0.79 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 DAO PF01266.19 358 4.8e-11 33.2 0.0 1 3 7.3e-06 0.00021 11.3 0.0 1 38 5 42 5 70 0.85 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 DAO PF01266.19 358 4.8e-11 33.2 0.0 2 3 0.00068 0.02 4.9 0.0 150 206 93 143 73 150 0.87 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 DAO PF01266.19 358 4.8e-11 33.2 0.0 3 3 1.8e-06 5.2e-05 13.4 0.0 151 200 209 258 204 263 0.88 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 NAD_binding_9 PF13454.1 156 0.00023 12.1 0.1 1 1 3.5e-05 0.001 10.0 0.0 89 155 197 259 178 260 0.76 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 Pyr_redox PF00070.22 80 1.6e-17 55.0 1.1 1 3 0.00019 0.0054 8.4 0.0 2 30 6 34 5 43 0.93 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 Pyr_redox PF00070.22 80 1.6e-17 55.0 1.1 2 3 0.062 1.8 0.3 0.0 41 61 91 111 81 113 0.83 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_22 - 448 Pyr_redox PF00070.22 80 1.6e-17 55.0 1.1 3 3 5.3e-15 1.5e-13 42.2 0.1 1 78 166 243 166 245 0.88 # 19796 # 21139 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.331 1_20 - 338 AlaDh_PNT_C PF01262.16 168 3.3e-09 27.7 0.1 1 1 2.1e-10 6.2e-09 26.8 0.1 19 68 159 209 150 232 0.88 # 17992 # 19005 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f64f305b-1fe9-41d5-9ec4-1ef2b7383dc3 # Target file: checkm_output/bins/pGCA_001558375.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001558375.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f64f305b-1fe9-41d5-9ec4-1ef2b7383dc3 checkm_output/bins/pGCA_001558375.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:25 2020 # [ok]