# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 94 Seryl_tRNA_N PF02403.17 108 1.7e-06 17.3 2.2 1 1 3.1e-07 2.2e-06 16.9 2.2 29 66 27 64 6 83 0.72 # 4323 # 4604 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=9bp;gc_cont=0.245 1_3 - 128 ABC_tran_2 PF12848.2 85 0.00062 8.8 19.2 1 3 0.0097 0.068 2.3 3.2 24 45 32 53 21 61 0.58 # 3741 # 4124 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.349 1_3 - 128 ABC_tran_2 PF12848.2 85 0.00062 8.8 19.2 2 3 0.00019 0.0013 7.8 1.5 14 41 62 89 57 100 0.93 # 3741 # 4124 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.349 1_3 - 128 ABC_tran_2 PF12848.2 85 0.00062 8.8 19.2 3 3 0.0001 0.00073 8.6 1.2 31 52 102 123 90 127 0.81 # 3741 # 4124 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.349 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1c57e1c1-e1ba-4c5e-828e-b84358499765 # Target file: checkm_output/bins/pGCA_001549875.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001549875.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1c57e1c1-e1ba-4c5e-828e-b84358499765 checkm_output/bins/pGCA_001549875.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:22 2020 # [ok]