# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 6_5 - 165 Mg_chelatase PF01078.16 207 4.2e-05 15.2 0.0 1 1 2.2e-06 8.3e-05 14.3 0.0 25 44 14 33 9 45 0.86 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 Mg_chelatase PF01078.16 207 0.00012 13.8 0.0 1 1 4.2e-06 0.00016 13.4 0.0 23 52 56 85 35 114 0.83 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_7 - 166 cobW PF02492.14 178 0.0011 10.9 0.7 1 1 2.4e-05 0.0018 10.2 0.7 2 19 57 74 56 84 0.89 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_7 - 166 Rad17 PF03215.10 519 0.00013 13.2 0.0 1 1 3.8e-06 0.00014 13.0 0.0 39 110 49 116 39 158 0.67 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 Rad17 PF03215.10 519 0.00025 12.3 0.0 1 1 7.9e-06 0.0003 12.0 0.0 43 64 9 30 1 77 0.85 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 IstB_IS21 PF01695.12 178 0.00035 12.5 0.1 1 1 1.7e-05 0.00062 11.7 0.0 38 69 45 77 22 94 0.78 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 IstB_IS21 PF01695.12 178 0.00039 12.4 0.0 1 1 2e-05 0.00074 11.4 0.0 43 65 7 29 3 37 0.84 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 3_3 - 279 MipZ PF09140.6 261 9.3e-11 33.7 0.0 1 2 3e-10 2.2e-08 25.9 0.0 2 56 6 60 5 88 0.85 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 3_3 - 279 MipZ PF09140.6 261 9.3e-11 33.7 0.0 2 2 0.00044 0.033 5.7 0.0 84 114 116 146 95 161 0.77 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 3_3 - 279 YhjQ PF06564.7 244 3.6e-08 25.5 0.0 1 1 1.4e-09 1.1e-07 24.0 0.0 4 151 7 164 4 184 0.75 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 6_5 - 165 CoaE PF01121.15 180 4.1e-05 15.5 0.0 1 2 8.7e-06 0.00066 11.6 0.0 3 32 14 43 12 74 0.85 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 CoaE PF01121.15 180 4.1e-05 15.5 0.0 2 2 0.0077 0.58 2.0 0.0 124 151 107 134 98 143 0.82 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 4_5 - 219 Methyltransf_18 PF12847.2 112 2.6e-10 33.4 0.0 1 1 7.3e-12 5.5e-10 32.4 0.0 3 107 56 159 54 163 0.79 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 6_5 - 165 NB-ARC PF00931.17 287 0.00012 13.5 0.1 1 1 2.6e-06 0.00019 12.8 0.1 17 39 9 31 1 70 0.83 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 4_2 - 286 AAA_22 PF13401.1 131 2.6e-30 97.8 0.1 1 1 2.2e-31 5.5e-30 96.7 0.0 2 131 24 184 23 184 0.89 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 6_5 - 165 AAA_22 PF13401.1 131 7.1e-07 22.0 0.8 1 2 6.2e-07 1.6e-05 17.6 0.1 4 27 11 34 7 49 0.86 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 AAA_22 PF13401.1 131 7.1e-07 22.0 0.8 2 2 0.042 1 2.0 0.0 98 121 53 76 35 80 0.86 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 AAA_22 PF13401.1 131 3.9e-05 16.3 0.1 1 1 1.9e-06 4.7e-05 16.1 0.1 4 26 55 77 52 147 0.86 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 4_5 - 219 Methyltransf_11 PF08241.7 95 4.3e-05 16.5 0.0 1 1 1.2e-06 8.6e-05 15.5 0.0 1 65 59 134 59 138 0.82 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 6_7 - 166 MutS_V PF00488.16 235 0.0004 12.3 0.0 1 1 7.9e-06 0.00059 11.7 0.0 28 65 40 77 30 82 0.86 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 PRK PF00485.13 194 0.00047 12.2 0.4 1 2 2.9e-05 0.0022 10.0 0.0 1 21 13 33 13 46 0.92 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 PRK PF00485.13 194 0.00047 12.2 0.4 2 2 0.037 2.8 -0.1 0.1 85 114 123 163 110 164 0.69 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 3_3 - 279 SRP54 PF00448.17 196 0.00041 12.3 0.6 1 1 1.9e-05 0.00072 11.5 0.1 11 40 15 44 5 68 0.89 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 6_5 - 165 SRP54 PF00448.17 196 0.00069 11.6 0.3 1 1 4.2e-05 0.0016 10.4 0.3 2 21 12 31 11 39 0.88 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 4_5 - 219 TylF PF05711.6 249 0.00063 11.3 0.0 1 1 1.1e-05 0.00083 10.9 0.0 165 245 113 196 82 198 0.72 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 6_5 - 165 AAA_17 PF13207.1 121 4.8e-12 39.3 0.0 1 1 1.5e-13 5.5e-12 39.1 0.0 1 110 13 126 13 156 0.69 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 AAA_17 PF13207.1 121 2.1e-07 24.3 0.1 1 1 1e-08 3.9e-07 23.4 0.1 1 32 57 91 57 164 0.55 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_7 - 166 AAA_21 PF13304.1 303 3.2e-07 23.0 0.0 1 1 5.6e-09 4.2e-07 22.6 0.0 2 62 58 128 57 162 0.69 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 MobB PF03205.9 140 0.00056 12.1 0.8 1 2 8.6e-05 0.0032 9.7 0.1 1 19 12 30 12 35 0.91 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 MobB PF03205.9 140 0.00056 12.1 0.8 2 2 0.049 1.8 0.8 0.0 82 118 68 102 52 127 0.67 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 MobB PF03205.9 140 0.00062 12.0 0.0 1 1 2.7e-05 0.001 11.3 0.0 2 20 57 75 56 101 0.82 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 3_3 - 279 LpxK PF02606.9 326 0.00042 11.8 0.0 1 1 7.7e-06 0.00058 11.3 0.0 34 71 3 39 1 63 0.91 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 3_3 - 279 ArsA_ATPase PF02374.10 305 1e-11 36.8 0.5 1 1 1.4e-12 1e-10 33.6 0.5 2 70 5 74 4 143 0.59 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 6_5 - 165 PhoH PF02562.11 205 8e-05 14.4 0.0 1 1 1.7e-06 0.00012 13.8 0.0 11 37 3 29 1 48 0.90 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 T2SE PF00437.15 272 1.1e-06 20.2 0.0 1 1 1.8e-08 1.3e-06 19.9 0.0 100 156 28 83 11 104 0.77 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 SKI PF01202.17 158 0.00054 12.3 2.0 1 1 9.5e-05 0.0071 8.7 2.0 2 107 21 128 20 159 0.59 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 4_5 - 219 Methyltransf_24 PF13578.1 106 7.1e-17 54.7 0.0 1 1 1.4e-18 1.1e-16 54.2 0.0 1 106 59 164 59 164 0.87 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 6_5 - 165 Zeta_toxin PF06414.7 201 3.2e-12 38.4 0.1 1 1 3.5e-13 1.3e-11 36.4 0.1 12 146 7 130 1 148 0.82 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 Zeta_toxin PF06414.7 201 0.00029 12.5 0.0 1 1 9.2e-06 0.00035 12.2 0.0 17 56 56 104 43 151 0.82 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_7 - 166 SMC_N PF02463.14 220 0.00099 10.8 1.6 1 1 0.0001 0.0076 7.9 1.6 25 54 56 85 31 166 0.68 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 3_3 - 279 VirC1 PF07015.6 231 5.8e-06 18.0 0.5 1 1 1.3e-07 9.8e-06 17.2 0.1 2 39 5 42 4 57 0.91 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 3_3 - 279 Fer4_NifH PF00142.13 273 1.9e-08 26.3 0.3 1 2 6.4e-10 4.8e-08 24.9 0.1 8 52 13 57 4 87 0.80 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 3_3 - 279 Fer4_NifH PF00142.13 273 1.9e-08 26.3 0.3 2 2 0.085 6.4 -1.7 0.0 161 192 220 250 172 271 0.56 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 6_7 - 166 Arch_ATPase PF01637.13 234 1.3e-05 17.4 0.1 1 1 2.4e-07 1.8e-05 17.0 0.1 17 79 54 109 42 163 0.61 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_7 - 166 AAA_16 PF13191.1 185 2.1e-08 26.9 0.0 1 1 9.7e-10 2.4e-08 26.6 0.0 23 129 54 164 42 166 0.69 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 AAA_16 PF13191.1 185 0.00093 11.7 0.0 1 1 4.9e-05 0.0012 11.3 0.0 24 44 11 31 3 72 0.88 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 4_2 - 286 AAA_16 PF13191.1 185 0.0011 11.5 0.9 1 2 0.0041 0.1 5.0 0.0 28 43 30 45 28 62 0.86 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 4_2 - 286 AAA_16 PF13191.1 185 0.0011 11.5 0.9 2 2 0.0095 0.24 3.8 0.2 153 184 144 174 143 175 0.84 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 6_7 - 166 AAA_23 PF13476.1 202 3.4e-08 26.5 0.2 1 1 6.1e-10 4.5e-08 26.1 0.2 13 98 46 122 36 165 0.61 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 AAA_18 PF13238.1 129 6.6e-11 35.1 0.2 1 1 3.3e-12 1.2e-10 34.3 0.2 1 115 14 129 14 146 0.73 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 AAA_18 PF13238.1 129 4.2e-06 19.6 0.0 1 1 1.6e-07 6.1e-06 19.1 0.0 1 23 58 102 58 150 0.63 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 3_3 - 279 CbiA PF01656.18 195 3.2e-32 104.0 0.1 1 1 5.6e-34 4.2e-32 103.6 0.1 1 191 7 230 7 235 0.83 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 4_5 - 219 Methyltransf_25 PF13649.1 101 0.00011 15.0 0.0 1 1 2.6e-06 0.0002 14.3 0.0 1 73 58 135 58 158 0.76 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 4_2 - 286 KaiC PF06745.8 227 3.7e-06 18.7 0.5 1 2 0.00071 0.027 6.0 0.0 25 40 32 47 15 53 0.86 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 4_2 - 286 KaiC PF06745.8 227 3.7e-06 18.7 0.5 2 2 4.2e-05 0.0016 10.1 0.4 48 141 76 166 66 171 0.80 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 6_5 - 165 KaiC PF06745.8 227 2.9e-05 15.7 0.0 1 1 8.3e-07 3.1e-05 15.6 0.0 16 50 8 44 3 128 0.81 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 AAA_14 PF13173.1 128 7.7e-06 18.4 0.0 1 1 5e-07 1.3e-05 17.7 0.1 2 68 11 77 10 149 0.76 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 AAA_14 PF13173.1 128 3.2e-05 16.3 0.0 1 1 2.2e-06 5.6e-05 15.6 0.0 2 56 55 110 54 130 0.63 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 4_2 - 286 AAA_14 PF13173.1 128 0.0032 9.9 8.6 1 3 0.041 1 1.8 0.0 7 27 31 51 25 86 0.78 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 4_2 - 286 AAA_14 PF13173.1 128 0.0032 9.9 8.6 2 3 9.6e-05 0.0024 10.3 0.9 48 97 130 177 90 208 0.71 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 4_2 - 286 AAA_14 PF13173.1 128 0.0032 9.9 8.6 3 3 0.052 1.3 1.5 0.6 25 87 206 275 193 282 0.61 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 6_7 - 166 AAA_29 PF13555.1 62 2e-09 29.4 0.2 1 1 8.6e-11 3.2e-09 28.8 0.2 16 55 49 88 40 92 0.85 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 AAA_29 PF13555.1 62 4.6e-05 15.5 0.1 1 1 2.3e-06 8.8e-05 14.6 0.1 21 39 9 27 2 29 0.82 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 4_2 - 286 AAA PF00004.24 132 1.3e-05 18.0 3.4 1 1 8.2e-07 6.1e-05 15.7 1.5 3 71 31 154 30 193 0.68 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 4_5 - 219 PCMT PF01135.14 210 2e-11 36.3 0.0 1 1 3.3e-13 2.5e-11 36.0 0.0 65 171 45 160 26 189 0.84 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 4_5 - 219 GCD14 PF08704.5 247 9.6e-05 14.4 0.0 1 1 1.8e-06 0.00013 14.0 0.0 37 122 51 138 41 164 0.79 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 6_7 - 166 DUF258 PF03193.11 161 4.3e-07 21.8 0.0 1 1 1.5e-08 5.7e-07 21.4 0.0 18 56 37 76 26 103 0.84 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 DUF258 PF03193.11 161 1.4e-05 16.8 0.0 1 1 5.5e-07 2.1e-05 16.3 0.0 31 58 6 34 1 78 0.83 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 3_3 - 279 AAA_31 PF13614.1 157 8e-13 41.1 0.3 1 1 3.7e-14 2.8e-12 39.4 0.3 1 149 5 161 5 169 0.77 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 6_5 - 165 AAA_33 PF13671.1 143 6.1e-26 83.5 0.0 1 1 1.9e-27 7e-26 83.3 0.0 1 143 13 151 13 151 0.96 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 AAA_33 PF13671.1 143 3.1e-05 16.4 0.6 1 1 1.6e-06 6e-05 15.5 0.4 1 17 57 73 57 87 0.90 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 KTI12 PF08433.5 270 6.6e-06 17.9 0.0 1 1 1.1e-07 8.3e-06 17.6 0.0 4 133 14 144 12 155 0.78 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 4_5 - 219 Methyltransf_26 PF13659.1 117 1.3e-08 27.5 0.0 1 1 5e-10 1.9e-08 26.9 0.0 2 78 56 137 55 159 0.89 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 3_3 - 279 Methyltransf_26 PF13659.1 117 0.00045 12.8 0.0 1 1 1.7e-05 0.00063 12.3 0.0 13 80 24 140 15 274 0.85 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 6_7 - 166 AAA_30 PF13604.1 196 0.00011 14.3 0.0 1 1 4.1e-06 0.00015 13.8 0.0 14 45 51 82 40 92 0.84 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 AAA_30 PF13604.1 196 0.00047 12.3 0.2 1 1 1.8e-05 0.00067 11.7 0.2 16 38 9 31 2 37 0.79 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 ABC_tran PF00005.22 137 1.8e-29 95.3 0.0 1 1 5.8e-31 2.2e-29 95.0 0.0 1 115 45 166 45 166 0.91 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 ABC_tran PF00005.22 137 2.2e-06 20.5 0.1 1 1 8.4e-08 3.1e-06 20.0 0.1 7 92 7 103 1 144 0.62 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 TIGR03263 TIGR03263 180 4.8e-06 18.5 0.3 1 1 2.8e-07 1e-05 17.4 0.3 2 64 56 122 55 125 0.64 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 TIGR03263 TIGR03263 180 1.8e-05 16.6 0.9 1 2 1.3e-05 0.00047 12.0 0.1 2 22 12 32 11 41 0.85 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 TIGR03263 TIGR03263 180 1.8e-05 16.6 0.9 2 2 0.0078 0.29 2.9 0.1 114 141 108 134 96 149 0.71 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 4_5 - 219 Cons_hypoth95 PF03602.10 183 0.00046 12.1 0.1 1 1 8.7e-06 0.00065 11.6 0.1 67 142 81 157 78 200 0.67 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 6_7 - 166 AAA_19 PF13245.1 76 0.00018 13.8 0.1 1 1 3.3e-06 0.00025 13.3 0.1 12 35 57 79 51 152 0.86 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_7 - 166 AAA_10 PF12846.2 304 1.4e-05 17.1 0.0 1 1 2.1e-07 1.6e-05 16.9 0.0 4 25 58 79 55 125 0.86 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 4_5 - 219 Methyltransf_31 PF13847.1 152 4e-11 35.2 0.1 1 1 7e-13 5.2e-11 34.8 0.1 3 126 54 179 52 205 0.81 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 6_7 - 166 Adeno_IVa2 PF02456.10 370 0.00039 11.6 0.0 1 1 6.6e-06 0.0005 11.2 0.0 89 134 57 100 28 107 0.80 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 4_5 - 219 Methyltransf_3 PF01596.12 205 3e-45 146.3 0.1 1 1 4.6e-47 3.5e-45 146.0 0.1 6 186 16 194 11 214 0.90 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 4_5 - 219 CmcI PF04989.7 206 1.4e-07 23.5 0.1 1 1 2.9e-09 2.2e-07 22.9 0.1 35 156 57 171 42 203 0.78 # 3061 # 3717 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 6_5 - 165 CPT PF07931.7 174 4.5e-05 15.6 0.0 1 2 0.00031 0.023 6.8 0.0 2 23 12 33 11 42 0.89 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 CPT PF07931.7 174 4.5e-05 15.6 0.0 2 2 0.00023 0.017 7.2 0.0 78 133 73 129 39 147 0.79 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 Guanylate_kin PF00625.16 183 1.9e-06 19.9 0.2 1 2 0.00021 0.016 7.1 0.0 2 21 11 30 10 41 0.88 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 Guanylate_kin PF00625.16 183 1.9e-06 19.9 0.2 2 2 1.3e-05 0.00099 11.1 0.0 105 146 97 138 66 159 0.68 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 Sigma54_activ_2 PF14532.1 138 0.00015 14.4 0.0 1 1 2.9e-06 0.00021 13.8 0.0 20 68 10 63 1 109 0.73 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 ArgK PF03308.11 267 0.00011 13.5 0.0 1 1 4.5e-06 0.00017 12.9 0.0 14 53 40 79 32 88 0.87 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 3_3 - 279 ArgK PF03308.11 267 0.00067 10.9 0.0 1 1 2.7e-05 0.001 10.4 0.0 38 77 14 53 2 83 0.81 # 3581 # 4417 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.325 6_7 - 166 PIF1 PF05970.9 364 0.00027 12.4 0.1 1 1 5.1e-06 0.00039 11.9 0.1 7 48 42 81 37 88 0.82 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_7 - 166 RNA_helicase PF00910.17 107 7e-06 18.7 0.0 1 1 2.7e-07 1e-05 18.2 0.0 1 52 58 105 58 126 0.78 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 RNA_helicase PF00910.17 107 1.3e-05 17.9 0.6 1 2 1.3e-05 0.00048 12.8 0.0 1 20 14 33 14 53 0.80 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 RNA_helicase PF00910.17 107 1.3e-05 17.9 0.6 2 2 0.02 0.76 2.5 0.1 11 47 64 100 63 133 0.86 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_5 - 165 UPF0079 PF02367.12 123 3.8e-05 15.8 0.3 1 1 2.6e-06 9.7e-05 14.5 0.1 8 36 4 32 1 40 0.87 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 UPF0079 PF02367.12 123 4.9e-05 15.5 0.1 1 1 2e-06 7.6e-05 14.9 0.1 8 39 48 79 41 87 0.82 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 AAA_24 PF13479.1 213 0.00016 13.8 0.6 1 1 1.2e-05 0.00046 12.3 0.2 6 26 14 34 9 49 0.83 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 4_2 - 286 AAA_24 PF13479.1 213 0.00073 11.6 2.6 1 2 4.8e-05 0.0018 10.3 0.1 3 22 26 45 24 51 0.85 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 4_2 - 286 AAA_24 PF13479.1 213 0.00073 11.6 2.6 2 2 0.049 1.8 0.5 0.4 47 85 101 158 72 170 0.63 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 6_7 - 166 NACHT PF05729.7 166 0.00022 13.4 0.6 1 1 1e-05 0.00039 12.6 0.1 2 22 57 77 56 85 0.85 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 NACHT PF05729.7 166 0.00039 12.6 0.2 1 1 1.9e-05 0.00071 11.8 0.2 2 20 13 31 12 35 0.89 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 AAA_25 PF13481.1 194 7.1e-05 14.7 0.0 1 1 1.3e-06 9.4e-05 14.4 0.0 31 52 53 74 43 108 0.84 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 6_5 - 165 AAA_28 PF13521.1 163 0.00039 12.9 0.0 1 1 1.9e-05 0.0007 12.1 0.0 2 28 14 43 13 69 0.83 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 AAA_28 PF13521.1 163 0.00063 12.2 0.2 1 1 2.9e-05 0.0011 11.5 0.2 2 18 58 74 57 89 0.89 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 4_2 - 286 AAA_5 PF07728.9 139 0.00086 11.6 0.8 1 1 0.00031 0.023 6.9 0.5 5 60 32 87 30 173 0.56 # 730 # 1587 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 6_5 - 165 APS_kinase PF01583.15 157 0.00011 14.4 0.0 1 1 3.8e-06 0.00014 14.0 0.0 2 47 11 52 10 126 0.83 # 1934 # 2428 # -1 # ID=6_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 6_7 - 166 APS_kinase PF01583.15 157 0.00041 12.5 0.2 1 1 2.5e-05 0.00094 11.4 0.1 2 28 55 81 54 95 0.81 # 3770 # 4267 # 1 # ID=6_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/94a961d5-e357-4052-b626-7d5e5775f065 # Target file: checkm_output/bins/pGCA_001548585.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001548585.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/94a961d5-e357-4052-b626-7d5e5775f065 checkm_output/bins/pGCA_001548585.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:21 2020 # [ok]