# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 469 3HCDH_N PF02737.13 180 6.7e-05 14.8 0.0 1 1 1.9e-06 0.00012 14.0 0.0 1 42 4 45 4 74 0.89 # 1701 # 3107 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_14 - 131 SSB PF00436.20 104 2.5e-25 80.7 0.1 1 1 5.1e-27 3.2e-25 80.3 0.1 1 87 2 82 2 94 0.93 # 13143 # 13535 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 2_6 - 671 DUF87 PF01935.12 229 2.8e-11 35.9 5.0 1 2 0.01 0.66 1.9 0.4 121 191 103 185 53 197 0.66 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_6 - 671 DUF87 PF01935.12 229 2.8e-11 35.9 5.0 2 2 4.4e-13 2.8e-11 35.9 5.0 19 209 253 454 237 485 0.68 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_12 - 272 AAA_22 PF13401.1 131 1.5e-28 91.8 0.0 1 1 8.1e-30 2.5e-28 91.1 0.0 2 131 25 171 24 171 0.87 # 11061 # 11876 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 2_6 - 671 AAA_22 PF13401.1 131 0.00013 14.3 0.0 1 1 5.7e-05 0.0018 10.7 0.0 7 34 260 286 254 398 0.82 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_8 - 225 AAA_17 PF13207.1 121 5e-05 16.4 0.9 1 1 2.3e-06 7.2e-05 15.9 0.9 23 113 24 122 20 205 0.83 # 7644 # 8318 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_7 - 222 AAA_17 PF13207.1 121 0.00028 14.0 0.9 1 1 1.5e-05 0.00047 13.3 0.9 23 112 24 121 20 177 0.80 # 6448 # 7113 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_2 - 469 F420_oxidored PF03807.12 96 0.00019 14.1 0.0 1 1 1e-05 0.00064 12.5 0.0 1 47 4 46 4 100 0.77 # 1701 # 3107 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_6 - 671 AAA_16 PF13191.1 185 8.1e-05 14.9 0.0 1 1 1.2e-05 0.00074 11.8 0.0 25 52 258 293 244 532 0.74 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_6 - 671 AAA_18 PF13238.1 129 0.00025 13.7 2.0 1 2 3.7e-05 0.0023 10.5 1.1 2 91 261 398 261 402 0.63 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_6 - 671 AAA_18 PF13238.1 129 0.00025 13.7 2.0 2 2 0.05 3.2 0.4 0.0 43 90 402 452 383 469 0.61 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_6 - 671 AAA_14 PF13173.1 128 0.0029 9.8 11.0 1 3 8.7e-05 0.0055 8.9 0.8 2 40 257 294 256 402 0.78 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_6 - 671 AAA_14 PF13173.1 128 0.0029 9.8 11.0 2 3 0.003 0.19 3.9 0.9 16 91 450 531 446 554 0.66 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_6 - 671 AAA_14 PF13173.1 128 0.0029 9.8 11.0 3 3 0.046 2.9 0.1 0.0 28 57 608 636 592 653 0.73 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_6 - 671 AAA_29 PF13555.1 62 3e-05 15.8 0.2 1 1 1.8e-06 0.00011 14.0 0.1 19 39 256 273 243 278 0.81 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_12 - 272 AAA PF00004.24 132 3.4e-06 19.6 0.0 1 2 0.00028 0.018 7.5 0.0 3 14 32 43 31 58 0.89 # 11061 # 11876 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 1_12 - 272 AAA PF00004.24 132 3.4e-06 19.6 0.0 2 2 6.1e-05 0.0038 9.7 0.0 34 111 110 167 64 189 0.83 # 11061 # 11876 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 2_6 - 671 DUF258 PF03193.11 161 3.3e-05 15.4 1.2 1 2 0.027 1.7 0.0 0.1 70 119 205 254 194 259 0.81 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_6 - 671 DUF258 PF03193.11 161 3.3e-05 15.4 1.2 2 2 1.9e-06 0.00012 13.6 0.6 32 56 255 278 232 357 0.74 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_12 - 547 TraG-D_C PF12696.2 128 9.5e-38 121.2 0.1 1 1 1.5e-39 9.5e-38 121.2 0.1 1 127 289 413 289 414 0.90 # 10491 # 12131 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.297 1_2 - 469 NAD_binding_2 PF03446.10 163 6e-49 158.3 0.0 1 1 1.5e-50 9.5e-49 157.6 0.0 2 163 3 174 2 174 0.97 # 1701 # 3107 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_2 - 469 NAD_Gly3P_dh_N PF01210.18 157 6.4e-05 15.0 0.0 1 1 4e-06 0.00025 13.0 0.0 2 47 5 50 4 66 0.78 # 1701 # 3107 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_2 - 469 2-Hacid_dh_C PF02826.14 178 5e-05 14.7 0.0 1 1 2e-06 0.00013 13.5 0.0 37 147 3 120 1 138 0.74 # 1701 # 3107 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 1_2 - 469 ApbA PF02558.11 151 1.9e-06 19.6 0.0 1 1 8.4e-08 5.3e-06 18.2 0.0 1 96 5 95 5 105 0.82 # 1701 # 3107 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_6 - 671 FtsK_SpoIIIE PF01580.13 205 0.00018 13.3 0.0 1 1 5.8e-06 0.00037 12.2 0.0 35 78 249 293 229 299 0.78 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_6 - 671 ABC_tran PF00005.22 137 0.00044 12.8 3.3 1 1 5e-05 0.0031 10.1 3.3 12 51 258 299 250 599 0.82 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 1_1 - 487 G6PD_N PF00479.17 183 3e-59 192.6 0.4 1 1 4.7e-61 3e-59 192.6 0.4 1 183 10 186 10 186 0.97 # 177 # 1637 # -1 # ID=1_1;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.273 2_6 - 671 AAA_10 PF12846.2 304 1.3e-56 184.5 2.4 1 1 7.5e-58 2.4e-56 183.6 2.4 1 301 257 584 257 586 0.91 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_12 - 547 AAA_10 PF12846.2 304 5.4e-09 28.1 0.1 1 1 5.3e-10 1.7e-08 26.5 0.1 1 300 31 368 31 371 0.69 # 10491 # 12131 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.297 1_12 - 272 DEAD PF00270.24 169 0.00096 10.9 1.7 1 1 4.1e-05 0.0026 9.5 1.0 113 143 121 151 30 164 0.79 # 11061 # 11876 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.301 2_12 - 547 TrwB_AAD_bind PF10412.4 386 2.8e-25 80.9 0.0 1 2 1.2e-05 0.00036 11.4 0.0 12 121 28 144 23 171 0.79 # 10491 # 12131 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.297 2_12 - 547 TrwB_AAD_bind PF10412.4 386 2.8e-25 80.9 0.0 2 2 1.3e-22 4e-21 67.2 0.0 219 377 260 424 207 431 0.86 # 10491 # 12131 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.297 2_6 - 671 TrwB_AAD_bind PF10412.4 386 2.4e-09 28.5 1.0 1 2 9.5e-07 3e-05 15.0 0.0 10 61 252 305 244 356 0.78 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_6 - 671 TrwB_AAD_bind PF10412.4 386 2.4e-09 28.5 1.0 2 2 1.7e-05 0.00054 10.8 0.0 237 316 495 577 480 603 0.75 # 3003 # 5015 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.286 2_14 - 131 tRNA_anti_2 PF13742.1 99 0.00032 12.8 0.0 1 1 6.8e-06 0.00043 12.4 0.0 37 87 23 79 9 88 0.79 # 13143 # 13535 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 2_12 - 547 T4SS-DNA_transf PF02534.9 469 8.4e-149 488.3 4.4 1 1 1.3e-150 8.4e-149 488.3 4.4 3 468 3 462 1 463 0.97 # 10491 # 12131 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.297 2_10 - 701 TIGR00615 TIGR00615 196 1.4e-06 19.8 0.1 1 1 5.8e-08 3.6e-06 18.5 0.1 123 171 89 138 80 156 0.86 # 7912 # 10014 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.272 1_2 - 469 IlvN PF07991.7 165 0.00029 12.5 0.1 1 1 2.5e-05 0.0016 10.1 0.0 5 48 3 46 1 61 0.84 # 1701 # 3107 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.348 2_14 - 131 tRNA_anti-codon PF01336.20 75 1.4e-05 17.2 0.1 1 1 3.4e-07 2.2e-05 16.6 0.1 23 65 39 81 9 99 0.82 # 13143 # 13535 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.288 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bf12ad2f-6e7d-4b6c-b8c9-ea9512d84b16 # Target file: checkm_output/bins/pGCA_001548415.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001548415.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bf12ad2f-6e7d-4b6c-b8c9-ea9512d84b16 checkm_output/bins/pGCA_001548415.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:20 2020 # [ok]