# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 6_2 - 121 Mg_chelatase PF01078.16 207 0.00014 15.4 0.1 1 1 8.7e-07 0.00023 14.6 0.1 21 42 93 114 83 117 0.92 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 6_2 - 121 IstB_IS21 PF01695.12 178 1.2e-17 58.2 0.1 1 1 6e-20 1.6e-17 57.8 0.1 2 73 48 120 47 120 0.94 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_79 - 229 MipZ PF09140.6 261 3.6e-07 23.8 0.0 1 1 1.5e-09 4.1e-07 23.6 0.0 8 50 52 94 45 175 0.82 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_79 - 229 YhjQ PF06564.7 244 0.00069 13.3 0.0 1 1 3.4e-06 0.0009 12.9 0.0 14 93 57 136 47 205 0.74 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_89 - 441 3HCDH_N PF02737.13 180 1.7e-06 22.0 0.2 1 1 8.7e-08 7.7e-06 19.9 0.0 1 83 2 81 2 87 0.83 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_90 - 339 3HCDH_N PF02737.13 180 0.00054 13.9 0.0 1 1 1.2e-05 0.0011 13.0 0.0 6 52 8 54 3 128 0.75 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_127 - 309 3HCDH_N PF02737.13 180 0.0012 12.8 0.3 1 2 0.00087 0.077 6.9 0.1 8 36 73 101 71 111 0.86 # 128886 # 129812 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.387 1_127 - 309 3HCDH_N PF02737.13 180 0.0012 12.8 0.3 2 2 0.011 0.97 3.3 0.0 82 134 232 288 223 295 0.77 # 128886 # 129812 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.387 1_70 - 389 DUF87 PF01935.12 229 9.8e-06 19.8 1.1 1 1 2.8e-07 3.7e-05 17.9 1.1 23 49 144 170 135 304 0.92 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 6_2 - 121 DUF87 PF01935.12 229 0.074 7.1 7.7 1 2 0.016 2.1 2.3 0.5 147 181 28 69 4 98 0.62 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 6_2 - 121 DUF87 PF01935.12 229 0.074 7.1 7.7 2 2 0.00014 0.019 9.0 1.5 26 43 97 114 94 119 0.86 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_90 - 339 NmrA PF05368.8 233 1.3e-05 18.8 0.2 1 2 1.2e-06 0.00032 14.3 0.1 1 102 3 123 3 132 0.80 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_90 - 339 NmrA PF05368.8 233 1.3e-05 18.8 0.2 2 2 0.0049 1.3 2.5 0.0 208 232 262 286 225 287 0.77 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_70 - 389 AAA_22 PF13401.1 131 7.6e-06 20.4 0.0 1 1 1.9e-07 1.6e-05 19.3 0.0 6 114 146 276 141 294 0.71 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_115 - 225 AAA_22 PF13401.1 131 0.00021 15.8 0.4 1 1 7.2e-06 0.00064 14.2 0.4 4 23 31 50 27 205 0.87 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 6_2 - 121 AAA_22 PF13401.1 131 0.0015 13.0 0.5 1 1 3.3e-05 0.003 12.0 0.2 3 27 93 117 89 120 0.85 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_79 - 229 SRP54 PF00448.17 196 1.8e-05 18.6 0.2 1 1 1.7e-07 4.4e-05 17.3 0.1 12 75 56 118 45 127 0.78 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_115 - 225 AAA_15 PF13175.1 415 5.9e-06 19.8 0.9 1 2 1.1e-05 0.003 10.9 0.1 22 60 30 83 5 104 0.73 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 AAA_15 PF13175.1 415 5.9e-06 19.8 0.9 2 2 9.4e-05 0.025 7.8 0.1 366 411 159 200 151 203 0.88 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 AAA_17 PF13207.1 121 0.0011 14.1 0.2 1 1 1.1e-05 0.0028 12.8 0.2 4 18 36 50 35 53 0.88 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 AAA_21 PF13304.1 303 2.9e-16 54.5 0.1 1 2 7.8e-08 2.1e-05 18.9 0.1 1 26 33 56 33 98 0.69 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 AAA_21 PF13304.1 303 2.9e-16 54.5 0.1 2 2 3.2e-12 8.6e-10 33.3 0.0 235 299 140 201 138 203 0.95 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_127 - 309 ADH_zinc_N PF00107.21 130 1.7e-05 18.7 0.5 1 2 3.7e-07 9.8e-05 16.2 0.0 1 55 76 131 75 139 0.79 # 128886 # 129812 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.387 1_127 - 309 ADH_zinc_N PF00107.21 130 1.7e-05 18.7 0.5 2 2 0.057 15 -0.6 0.0 42 84 243 285 236 302 0.48 # 128886 # 129812 # 1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.387 1_79 - 229 ArsA_ATPase PF02374.10 305 9.3e-06 19.1 0.3 1 2 3.1e-06 0.00081 12.7 0.1 13 38 57 82 53 112 0.91 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_79 - 229 ArsA_ATPase PF02374.10 305 9.3e-06 19.1 0.3 2 2 0.0011 0.3 4.3 0.0 115 136 140 163 120 164 0.78 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 6_2 - 121 PhoH PF02562.11 205 3e-06 20.9 0.0 1 1 1.7e-08 4.6e-06 20.2 0.0 14 44 89 119 73 120 0.76 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_70 - 389 T2SE PF00437.15 272 0.0013 11.9 0.0 1 1 3.1e-05 0.0028 10.9 0.0 130 152 146 168 125 175 0.84 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 6_2 - 121 T2SE PF00437.15 272 0.0016 11.7 0.9 1 1 2e-05 0.0018 11.5 0.8 126 148 92 114 27 118 0.82 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_115 - 225 T2SE PF00437.15 272 0.002 11.3 1.6 1 2 0.00037 0.033 7.3 0.3 129 148 32 51 7 59 0.76 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 T2SE PF00437.15 272 0.002 11.3 1.6 2 2 0.005 0.44 3.6 0.1 114 178 138 213 67 220 0.71 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 2_16 - 234 DNA_pack_C PF02499.10 354 0.00066 12.7 0.2 1 1 3.6e-06 0.00095 12.2 0.2 281 328 36 83 24 106 0.88 # 12443 # 13144 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.346 5_2 - 104 Terminase_1 PF03354.10 477 5e-16 52.4 0.1 1 1 6e-18 5.3e-16 52.3 0.1 129 228 3 99 1 103 0.94 # 614 # 925 # -1 # ID=5_2;partial=00;start_type=GTG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.375 5_1 - 91 Terminase_1 PF03354.10 477 9.4e-14 44.9 0.3 1 1 1.2e-15 1e-13 44.7 0.3 310 393 2 80 1 89 0.89 # 104 # 376 # -1 # ID=5_1;partial=00;start_type=GTG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.311 2_47 - 81 Terminase_1 PF03354.10 477 6.4e-05 15.7 0.4 1 1 7.7e-07 6.8e-05 15.6 0.4 418 475 5 62 1 64 0.89 # 37322 # 37564 # -1 # ID=2_47;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_79 - 229 AAA_26 PF13500.1 199 0.00018 15.4 0.0 1 2 2.7e-05 0.0071 10.2 0.0 1 38 45 87 45 126 0.79 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_79 - 229 AAA_26 PF13500.1 199 0.00018 15.4 0.0 2 2 0.0037 0.99 3.2 0.0 124 169 173 217 162 226 0.78 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_70 - 389 Zeta_toxin PF06414.7 201 0.00062 13.2 0.0 1 1 4e-06 0.0011 12.4 0.0 19 94 147 223 140 226 0.68 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_89 - 441 FAD_binding_3 PF01494.14 356 8.9e-05 15.9 0.1 1 1 5.4e-07 0.00014 15.2 0.1 4 44 3 43 1 45 0.94 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_115 - 225 SMC_N PF02463.14 220 2.2e-10 34.4 0.9 1 1 7.4e-11 2e-08 28.0 0.9 24 211 31 213 15 219 0.70 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_79 - 229 Fer4_NifH PF00142.13 273 0.00033 14.2 0.5 1 1 3.2e-06 0.00085 12.8 0.1 12 55 57 100 50 124 0.77 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_70 - 389 Arch_ATPase PF01637.13 234 1.7e-06 22.2 0.1 1 1 2.1e-08 2.8e-06 21.5 0.1 20 131 144 260 137 275 0.75 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_115 - 225 Arch_ATPase PF01637.13 234 0.00028 14.9 0.0 1 1 1e-05 0.0013 12.7 0.0 20 83 31 154 21 201 0.53 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_70 - 389 AAA_16 PF13191.1 185 0.00022 15.5 0.1 1 1 4.2e-06 0.00037 14.8 0.0 21 46 141 166 125 243 0.88 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_115 - 225 AAA_16 PF13191.1 185 0.00028 15.2 0.1 1 1 6.6e-06 0.00059 14.1 0.1 18 42 25 49 16 71 0.81 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 6_2 - 121 AAA_16 PF13191.1 185 0.0011 13.2 0.1 1 1 2e-05 0.0018 12.6 0.1 25 44 95 114 72 120 0.86 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_115 - 225 AAA_23 PF13476.1 202 0.00051 14.7 1.4 1 1 3.1e-06 0.00083 14.0 1.4 18 39 29 51 11 210 0.89 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 AAA_18 PF13238.1 129 0.00028 15.5 0.4 1 2 5.2e-05 0.014 10.0 0.3 3 18 36 51 35 124 0.89 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 AAA_18 PF13238.1 129 0.00028 15.5 0.4 2 2 0.0046 1.2 3.7 0.0 46 93 167 211 135 218 0.80 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_90 - 339 adh_short PF00106.20 167 9.2e-14 46.0 0.0 1 1 5.6e-16 1.5e-13 45.3 0.0 2 144 2 132 1 135 0.87 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_115 - 225 AAA_13 PF13166.1 712 0.00012 14.9 0.0 1 2 1.4e-05 0.0039 9.9 0.0 15 51 30 65 17 131 0.75 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 AAA_13 PF13166.1 712 0.00012 14.9 0.0 2 2 0.0013 0.35 3.5 0.0 525 571 157 201 147 211 0.88 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_79 - 229 CbiA PF01656.18 195 3e-17 56.9 0.2 1 1 1.5e-19 4.1e-17 56.5 0.2 2 163 48 221 47 226 0.74 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_90 - 339 Polysacc_synt_2 PF02719.10 294 9.6e-19 61.6 0.2 1 2 3.8e-19 1e-16 55.0 0.0 1 173 3 181 3 185 0.82 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_90 - 339 Polysacc_synt_2 PF02719.10 294 9.6e-19 61.6 0.2 2 2 0.0042 1.1 2.3 0.0 222 268 254 294 240 297 0.78 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_115 - 225 KaiC PF06745.8 227 8.9e-05 16.0 0.6 1 2 0.00028 0.075 6.4 0.2 15 35 27 47 11 50 0.77 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 KaiC PF06745.8 227 8.9e-05 16.0 0.6 2 2 9.4e-05 0.025 7.9 0.0 136 180 176 217 163 222 0.80 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 6_9 - 67 CSD PF00313.17 66 5.4e-32 103.7 3.2 1 1 2.2e-34 5.8e-32 103.6 3.2 2 65 3 65 2 66 0.98 # 6605 # 6805 # -1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.383 1_115 - 225 AAA_29 PF13555.1 62 4.5e-07 23.7 0.1 1 1 6.1e-09 8.1e-07 22.8 0.1 13 40 22 48 19 59 0.84 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_70 - 389 AAA_29 PF13555.1 62 0.00014 15.7 0.0 1 1 2e-06 0.00026 14.8 0.0 19 40 140 161 130 169 0.83 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 6_2 - 121 AAA PF00004.24 132 0.0038 11.7 1.2 1 1 3.1e-05 0.0083 10.6 1.2 1 18 97 114 97 118 0.90 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 6_2 - 121 Bac_DnaA PF00308.13 219 0.00079 13.4 0.5 1 2 0.07 19 -0.9 0.0 67 89 25 48 5 63 0.62 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 6_2 - 121 Bac_DnaA PF00308.13 219 0.00079 13.4 0.5 2 2 6.3e-06 0.0017 12.3 0.1 36 58 96 118 79 120 0.87 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_90 - 339 KR PF08659.5 181 2e-09 31.7 0.0 1 1 2e-11 5.3e-09 30.3 0.0 3 144 3 131 2 136 0.83 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 2_25 - 84 CobU PF02283.11 167 0.0018 12.0 0.3 1 1 7.9e-06 0.0021 11.8 0.3 19 60 35 82 31 83 0.78 # 20918 # 21169 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.369 6_2 - 121 Sigma54_activat PF00158.21 168 0.00051 13.8 0.3 1 1 3.4e-06 0.0009 13.0 0.0 18 42 90 114 74 118 0.80 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_115 - 225 MMR_HSR1 PF01926.18 116 0.0013 13.0 0.3 1 1 9.8e-06 0.0026 12.0 0.3 3 20 35 52 33 214 0.77 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 DUF258 PF03193.11 161 5.3e-06 20.0 0.4 1 1 8.6e-08 1.1e-05 18.9 0.2 22 57 17 53 4 83 0.77 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 6_2 - 121 DUF258 PF03193.11 161 0.0001 15.8 0.0 1 1 1.3e-06 0.00017 15.1 0.0 8 55 68 114 61 118 0.87 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_89 - 441 NAD_binding_2 PF03446.10 163 7.9e-09 29.8 0.2 1 2 2.6e-07 7e-05 17.0 0.1 2 109 1 135 1 144 0.86 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_89 - 441 NAD_binding_2 PF03446.10 163 7.9e-09 29.8 0.2 2 2 7.8e-05 0.021 8.9 0.0 16 64 334 383 333 413 0.83 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_79 - 229 AAA_31 PF13614.1 157 9.7e-28 91.4 0.0 1 1 4.4e-30 1.2e-27 91.1 0.0 2 154 46 190 45 193 0.96 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_89 - 441 NAD_Gly3P_dh_N PF01210.18 157 2.8e-09 31.2 1.2 1 2 1.1e-10 2.8e-08 27.9 0.1 1 138 2 155 2 160 0.74 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_89 - 441 NAD_Gly3P_dh_N PF01210.18 157 2.8e-09 31.2 1.2 2 2 0.053 14 -0.4 0.0 51 77 358 384 351 391 0.86 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 6_9 - 67 OB_RNB PF08206.6 58 6.5e-05 16.7 0.4 1 1 3.7e-07 9.9e-05 16.1 0.4 7 27 12 31 4 35 0.83 # 6605 # 6805 # -1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.383 1_89 - 441 ApbA PF02558.11 151 1.1e-06 22.5 0.1 1 2 4e-08 1.1e-05 19.2 0.0 1 82 3 91 3 111 0.83 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_89 - 441 ApbA PF02558.11 151 1.1e-06 22.5 0.1 2 2 0.019 5 0.8 0.0 63 116 201 251 129 280 0.75 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_70 - 389 FtsK_SpoIIIE PF01580.13 205 2.8e-26 86.5 0.1 1 1 3.1e-28 4.1e-26 86.0 0.1 17 204 121 291 118 292 0.92 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 6_2 - 121 FtsK_SpoIIIE PF01580.13 205 0.003 11.3 0.2 1 1 3.2e-05 0.0043 10.8 0.2 34 58 90 114 55 120 0.76 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 5_7 - 73 RecA PF00154.16 323 3.1e-14 47.0 0.1 1 1 1.3e-16 3.5e-14 46.8 0.1 3 53 20 69 18 71 0.92 # 4239 # 4457 # -1 # ID=5_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.388 1_115 - 225 ABC_tran PF00005.22 137 3.5e-35 115.6 0.0 1 1 3.5e-37 4.6e-35 115.2 0.0 1 136 21 169 21 170 0.89 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_70 - 389 ABC_tran PF00005.22 137 0.0013 13.3 0.0 1 1 1.6e-05 0.0022 12.6 0.0 14 51 147 186 142 369 0.79 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_89 - 441 THF_DHG_CYH_C PF02882.14 161 0.0014 12.0 1.2 1 2 8.5e-05 0.011 9.1 0.1 68 96 65 93 54 118 0.80 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_89 - 441 THF_DHG_CYH_C PF02882.14 161 0.0014 12.0 1.2 2 2 0.074 9.9 -0.5 0.1 66 95 126 155 97 164 0.69 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 2_18 - 177 THF_DHG_CYH_C PF02882.14 161 0.0024 11.2 0.1 1 2 0.097 13 -0.9 0.0 72 98 25 51 13 77 0.73 # 15968 # 16498 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.298 2_18 - 177 THF_DHG_CYH_C PF02882.14 161 0.0024 11.2 0.1 2 2 6.1e-05 0.0082 9.5 0.0 21 50 76 103 71 121 0.78 # 15968 # 16498 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_115 - 225 ATP-synt_ab PF00006.20 215 0.0017 12.2 0.6 1 1 9.5e-06 0.0025 11.6 0.2 10 59 26 75 13 157 0.87 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_90 - 339 NAD_binding_4 PF07993.7 249 9.3e-11 35.3 0.0 1 1 1.6e-11 4.2e-09 29.9 0.0 1 183 5 163 5 221 0.78 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_89 - 441 UDPG_MGDP_dh_N PF03721.9 185 2.3e-68 223.5 1.6 1 1 1.7e-70 2.3e-68 223.5 1.6 1 185 1 184 1 184 0.98 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_90 - 339 UDPG_MGDP_dh_N PF03721.9 185 7.1e-06 19.8 0.1 1 1 7.1e-08 9.4e-06 19.4 0.1 7 57 8 58 1 139 0.73 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_79 - 229 AAA_19 PF13245.1 76 0.00054 14.0 0.0 1 1 9.2e-06 0.0012 12.9 0.0 13 48 48 79 40 85 0.81 # 84838 # 85524 # 1 # ID=1_79;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 6_2 - 121 AAA_19 PF13245.1 76 0.0009 13.3 0.0 1 1 1.1e-05 0.0015 12.6 0.0 11 30 96 114 86 120 0.79 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_90 - 339 RmlD_sub_bind PF04321.12 287 6.5e-15 49.0 0.0 1 1 4.1e-17 1.1e-14 48.3 0.0 1 138 1 161 1 177 0.95 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_90 - 339 NAD_binding_10 PF13460.1 183 4.4e-11 37.4 0.0 1 1 2.6e-13 6.9e-11 36.7 0.0 1 150 3 181 3 210 0.75 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_70 - 389 AAA_10 PF12846.2 304 2.7e-08 27.8 0.3 1 2 2.5e-05 0.0033 11.1 0.0 2 23 145 166 144 201 0.75 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_70 - 389 AAA_10 PF12846.2 304 2.7e-08 27.8 0.3 2 2 1.7e-06 0.00022 15.0 0.0 205 289 212 313 203 321 0.76 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_115 - 225 AAA_10 PF12846.2 304 9.2e-05 16.2 0.3 1 1 1.7e-06 0.00023 14.9 0.1 6 22 36 52 32 62 0.85 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_90 - 339 adh_short_C2 PF13561.1 241 9.9e-06 19.7 0.0 1 1 6.5e-08 1.7e-05 18.9 0.0 8 164 12 165 7 172 0.73 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_115 - 225 SbcCD_C PF13558.1 90 0.00043 14.5 0.1 1 1 1.4e-05 0.0038 11.5 0.1 52 88 154 184 118 186 0.79 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_90 - 339 DAO PF01266.19 358 0.0019 11.4 0.0 1 2 4e-05 0.011 8.9 0.0 6 30 8 32 3 65 0.89 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_90 - 339 DAO PF01266.19 358 0.0019 11.4 0.0 2 2 0.02 5.4 0.0 0.0 180 212 233 266 210 300 0.79 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_97 - 123 DUF544 PF04424.8 121 0.00028 15.0 0.0 1 1 1.1e-06 0.0003 14.9 0.0 19 68 27 75 15 116 0.82 # 103061 # 103429 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_90 - 339 3Beta_HSD PF01073.14 280 6.2e-16 52.1 0.1 1 1 3.5e-18 9.2e-16 51.6 0.1 1 156 4 158 4 166 0.84 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 6_2 - 121 ResIII PF04851.10 184 0.00091 13.4 0.7 1 1 4.5e-06 0.0012 13.0 0.7 22 45 77 114 27 119 0.72 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_90 - 339 Methyltransf_31 PF13847.1 152 0.00017 15.5 0.1 1 2 0.00051 0.068 7.0 0.1 13 83 8 74 6 130 0.78 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_90 - 339 Methyltransf_31 PF13847.1 152 0.00017 15.5 0.1 2 2 0.00086 0.11 6.3 0.0 4 28 254 280 252 289 0.77 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 2_26 - 324 Methyltransf_31 PF13847.1 152 0.00057 13.8 0.0 1 1 9.5e-06 0.0013 12.7 0.0 32 79 55 105 25 133 0.83 # 21961 # 22932 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.382 1_70 - 389 Viral_helicase1 PF01443.13 234 0.0027 11.5 0.1 1 2 5.8e-05 0.016 9.0 0.0 2 66 148 211 147 212 0.82 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_70 - 389 Viral_helicase1 PF01443.13 234 0.0027 11.5 0.1 2 2 0.031 8.3 0.1 0.0 35 75 219 260 210 270 0.80 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_34 - 254 TIP49 PF06068.8 398 0.00028 13.9 1.5 1 1 1.3e-06 0.00036 13.6 1.5 99 231 43 182 28 195 0.81 # 30949 # 31710 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.302 1_90 - 339 Epimerase PF01370.16 236 3.8e-59 194.2 0.0 1 1 1.7e-61 4.5e-59 194.0 0.0 1 236 3 261 3 261 0.96 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_70 - 389 DUF815 PF05673.8 250 0.00019 14.7 0.0 1 1 1.3e-06 0.00036 13.8 0.0 53 79 144 170 133 206 0.80 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_89 - 441 Pyr_redox PF00070.22 80 0.00019 16.1 2.3 1 1 1.8e-06 0.00047 14.9 0.2 2 35 3 36 2 71 0.76 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 1_70 - 389 TrwB_AAD_bind PF10412.4 386 0.00044 13.2 0.0 1 2 1.7e-05 0.0045 9.9 0.0 12 38 141 167 135 172 0.87 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_70 - 389 TrwB_AAD_bind PF10412.4 386 0.00044 13.2 0.0 2 2 0.0099 2.6 0.7 0.0 237 281 240 289 228 292 0.76 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 6_2 - 121 Sigma54_activ_2 PF14532.1 138 0.00087 13.6 0.2 1 1 7.1e-06 0.0019 12.6 0.1 13 43 84 116 76 120 0.78 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_114 - 368 DUF3127 PF11325.3 84 5.6e-05 17.4 1.4 1 2 0.00086 0.23 5.9 0.0 49 73 224 249 214 253 0.84 # 117368 # 118471 # 1 # ID=1_114;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_114 - 368 DUF3127 PF11325.3 84 5.6e-05 17.4 1.4 2 2 6.6e-05 0.018 9.4 0.4 9 59 300 350 294 353 0.90 # 117368 # 118471 # 1 # ID=1_114;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_70 - 389 Gtr1_RagA PF04670.7 232 0.00021 14.8 0.0 1 1 1.7e-06 0.00046 13.6 0.0 2 47 147 194 146 230 0.83 # 72486 # 73652 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.370 1_90 - 339 TrkA_N PF02254.13 116 0.00032 15.0 0.1 1 1 5.2e-06 0.00069 13.9 0.1 5 58 8 68 3 126 0.67 # 97248 # 98264 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_89 - 441 TrkA_N PF02254.13 116 0.022 9.1 5.2 1 1 0.00014 0.018 9.3 0.9 1 42 3 44 3 145 0.81 # 95724 # 97046 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.320 6_2 - 121 AAA_25 PF13481.1 194 0.00012 15.9 0.0 1 1 1.3e-06 0.00017 15.3 0.0 25 57 85 118 56 120 0.80 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_115 - 225 AAA_25 PF13481.1 194 0.00017 15.3 0.0 1 1 2.3e-06 0.0003 14.5 0.0 30 50 28 48 12 70 0.84 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 1_115 - 225 Herpes_Helicase PF02689.9 819 0.00083 11.4 0.0 1 1 3.9e-06 0.001 11.1 0.0 65 118 36 92 31 126 0.77 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 6_2 - 121 AAA_5 PF07728.9 139 0.0028 11.7 0.9 1 1 1.8e-05 0.0047 11.0 0.4 1 19 96 114 96 116 0.90 # 919 # 1281 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.314 1_115 - 225 APS_kinase PF01583.15 157 0.0013 12.7 0.0 1 1 1e-05 0.0027 11.6 0.0 7 51 36 79 30 88 0.85 # 118468 # 119142 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.396 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d0b0d342-520f-4423-b68f-84447fb5bf5e # Target file: checkm_output/bins/pGCA_001518875.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001518875.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d0b0d342-520f-4423-b68f-84447fb5bf5e checkm_output/bins/pGCA_001518875.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:18 2020 # [ok]