# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 10_1 - 288 DUF2431 PF10354.4 166 0.0025 11.7 0.0 1 1 2.2e-05 0.0046 10.8 0.0 100 150 167 217 157 225 0.89 # 31 # 894 # -1 # ID=10_1;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.631 3_17 - 218 UPF0020 PF01170.13 180 1.9e-08 28.0 0.0 1 2 8.4e-06 0.0017 11.8 0.0 102 121 16 35 7 73 0.73 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_17 - 218 UPF0020 PF01170.13 180 1.9e-08 28.0 0.0 2 2 1.7e-06 0.00035 14.1 0.0 24 80 159 204 149 212 0.81 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 2_4 - 224 MipZ PF09140.6 261 3.9e-07 23.3 0.3 1 1 3e-09 6.2e-07 22.6 0.3 2 45 2 45 1 117 0.85 # 3403 # 4074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.568 3_17 - 218 Methyltransf_18 PF12847.2 112 0.00049 14.6 0.1 1 1 6.5e-06 0.0013 13.2 0.1 2 45 164 205 163 215 0.87 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_34 - 965 UvrD_C_2 PF13538.1 104 0.00087 13.4 1.6 1 1 2.3e-05 0.0048 11.0 0.4 37 98 819 904 790 909 0.67 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 3_34 - 965 AAA_22 PF13401.1 131 6e-06 20.4 0.1 1 1 2.3e-07 2.4e-05 18.4 0.1 3 127 449 572 446 575 0.73 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_7 - 579 AAA_22 PF13401.1 131 0.00031 14.8 0.0 1 1 9.2e-06 0.00094 13.3 0.0 3 45 29 65 25 140 0.69 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 3_17 - 218 Methyltransf_11 PF08241.7 95 0.0013 13.1 0.0 1 2 0.0024 0.49 4.9 0.0 78 94 53 69 45 70 0.88 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_17 - 218 Methyltransf_11 PF08241.7 95 0.0013 13.1 0.0 2 2 0.0014 0.28 5.7 0.0 5 41 172 207 168 215 0.86 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_11 - 659 DNA_methylase PF00145.12 335 3.1e-11 36.8 0.0 1 3 0.00065 0.13 5.2 0.0 2 42 8 57 7 74 0.89 # 7601 # 9577 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.671 3_11 - 659 DNA_methylase PF00145.12 335 3.1e-11 36.8 0.0 2 3 2.8e-08 5.8e-06 19.5 0.0 105 172 152 221 133 236 0.84 # 7601 # 9577 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.671 3_11 - 659 DNA_methylase PF00145.12 335 3.1e-11 36.8 0.0 3 3 0.00012 0.025 7.6 0.0 304 333 593 623 533 625 0.87 # 7601 # 9577 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.671 3_17 - 218 N6_N4_Mtase PF01555.13 231 1.4e-34 113.5 0.0 1 2 3.2e-11 6.6e-09 29.5 0.0 1 114 21 124 21 140 0.85 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_17 - 218 N6_N4_Mtase PF01555.13 231 1.4e-34 113.5 0.0 2 2 2.2e-27 4.6e-25 82.3 0.0 170 230 142 202 132 203 0.93 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 4_7 - 579 AAA_17 PF13207.1 121 4.1e-06 21.6 0.1 1 1 5.8e-08 1.2e-05 20.1 0.1 2 78 33 128 32 284 0.70 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 2_4 - 224 ArsA_ATPase PF02374.10 305 6.9e-05 15.9 0.1 1 1 5.8e-07 0.00012 15.1 0.1 8 38 8 38 1 53 0.88 # 3403 # 4074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.568 4_7 - 579 Zeta_toxin PF06414.7 201 2.4e-62 203.5 0.7 1 1 2.3e-64 4.8e-62 202.5 0.7 4 200 20 214 17 215 0.97 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 2_4 - 224 VirC1 PF07015.6 231 2.5e-08 27.1 0.1 1 1 3.7e-10 7.6e-08 25.6 0.1 3 189 2 187 1 218 0.78 # 3403 # 4074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.568 3_34 - 965 Arch_ATPase PF01637.13 234 0.00063 13.4 0.0 1 1 7.4e-06 0.0015 12.1 0.0 11 128 442 571 440 584 0.66 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_7 - 579 AAA_16 PF13191.1 185 1.5e-08 28.7 2.9 1 3 5.8e-10 1.2e-07 25.8 0.1 18 116 24 123 17 259 0.76 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 4_7 - 579 AAA_16 PF13191.1 185 1.5e-08 28.7 2.9 2 3 0.05 10 -0.1 0.0 55 101 287 332 269 377 0.64 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 4_7 - 579 AAA_16 PF13191.1 185 1.5e-08 28.7 2.9 3 3 0.022 4.4 1.1 0.1 83 125 480 536 445 573 0.70 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 4_7 - 579 AAA_18 PF13238.1 129 4.1e-05 17.8 0.3 1 1 1.3e-06 0.00027 15.2 0.1 1 29 33 65 33 141 0.74 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 2_4 - 224 CbiA PF01656.18 195 1.3e-17 57.8 0.0 1 1 9.6e-20 2e-17 57.2 0.0 1 191 3 178 3 181 0.81 # 3403 # 4074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.568 4_7 - 579 AAA PF00004.24 132 0.00077 13.6 0.0 1 1 7.2e-06 0.0015 12.7 0.0 1 25 33 57 33 108 0.79 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 3_16 - 595 PAPS_reduct PF01507.14 174 9.9e-12 38.9 0.0 1 1 2.3e-13 4.7e-11 36.7 0.0 3 149 33 216 31 222 0.79 # 12406 # 14190 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 10_2 - 109 Val_tRNA-synt_C PF10458.4 66 0.00045 14.2 0.6 1 1 2.2e-06 0.00045 14.2 0.6 1 25 74 98 74 101 0.92 # 891 # 1217 # -1 # ID=10_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.670 3_33 - 706 TraG-D_C PF12696.2 128 2.1e-18 60.4 0.0 1 1 1.6e-20 3.3e-18 59.7 0.0 2 127 416 537 415 538 0.86 # 24767 # 26884 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 2_4 - 224 AAA_31 PF13614.1 157 7.6e-07 23.1 0.2 1 2 4.6e-06 0.00095 13.0 0.0 2 40 2 40 1 45 0.88 # 3403 # 4074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.568 2_4 - 224 AAA_31 PF13614.1 157 7.6e-07 23.1 0.2 2 2 0.00015 0.031 8.1 0.0 113 152 74 112 69 117 0.85 # 3403 # 4074 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.568 3_34 - 965 NTPase_1 PF03266.10 168 0.00011 15.8 0.4 1 1 1.5e-06 0.00031 14.4 0.4 2 36 453 487 452 509 0.89 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_7 - 579 AAA_33 PF13671.1 143 6e-11 36.3 2.1 1 1 6.2e-13 6.4e-11 36.2 0.4 2 122 33 161 32 178 0.84 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 3_34 - 965 AAA_33 PF13671.1 143 0.0012 12.7 0.1 1 1 1.1e-05 0.0012 12.7 0.1 2 100 453 564 452 568 0.69 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 3_17 - 218 Methyltransf_26 PF13659.1 117 2.2e-16 53.9 1.6 1 2 4e-09 8.1e-07 23.0 0.0 57 114 7 71 4 74 0.76 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_17 - 218 Methyltransf_26 PF13659.1 117 2.2e-16 53.9 1.6 2 2 4.1e-11 8.5e-09 29.4 0.6 1 45 164 207 164 216 0.88 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_29 - 104 Bac_GDH PF05088.7 1528 0.0017 9.6 0.7 1 1 9.1e-06 0.0019 9.5 0.7 1337 1400 7 70 1 79 0.87 # 22298 # 22609 # -1 # ID=3_29;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.670 3_34 - 965 AAA_30 PF13604.1 196 6.5e-52 169.8 7.0 1 1 9.7e-54 2e-51 168.3 7.0 2 171 434 610 433 650 0.89 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_28 - 865 FtsK_SpoIIIE PF01580.13 205 0.00011 15.7 0.0 1 1 2.9e-06 0.0006 13.2 0.0 20 61 469 513 458 516 0.86 # 21368 # 23962 # -1 # ID=4_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_17 - 218 Met_10 PF02475.11 200 0.0014 12.1 0.0 1 1 1.1e-05 0.0022 11.5 0.0 94 134 156 194 148 203 0.77 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 4_7 - 579 ABC_tran PF00005.22 137 2.4e-05 18.6 0.0 1 1 3e-07 6.1e-05 17.3 0.0 13 80 32 122 26 234 0.69 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 3_17 - 218 Cons_hypoth95 PF03602.10 183 0.00016 15.0 0.0 1 2 0.00033 0.067 6.5 0.0 100 127 8 33 3 77 0.78 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_17 - 218 Cons_hypoth95 PF03602.10 183 0.00016 15.0 0.0 2 2 0.00026 0.054 6.8 0.0 42 60 163 181 141 207 0.79 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_34 - 965 DAP3 PF10236.4 309 0.00038 13.3 0.5 1 1 3.7e-06 0.00076 12.3 0.5 20 54 447 481 439 486 0.90 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 3_34 - 965 AAA_19 PF13245.1 76 1.8e-06 21.6 0.5 1 1 5.9e-08 6e-06 19.9 0.5 2 60 441 496 440 508 0.83 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_7 - 579 AAA_19 PF13245.1 76 0.00038 14.1 0.3 1 1 2.4e-05 0.0025 11.5 0.1 10 45 30 61 20 128 0.78 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 4_28 - 865 AAA_10 PF12846.2 304 6.3e-49 160.9 0.0 1 1 1e-50 1.1e-48 160.2 0.0 1 296 490 779 490 788 0.89 # 21368 # 23962 # -1 # ID=4_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_33 - 706 AAA_10 PF12846.2 304 3.8e-10 33.6 0.1 1 3 0.0002 0.02 8.2 0.0 4 66 187 240 186 256 0.83 # 24767 # 26884 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_33 - 706 AAA_10 PF12846.2 304 3.8e-10 33.6 0.1 2 3 0.011 1.1 2.5 0.0 221 247 305 334 272 339 0.70 # 24767 # 26884 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_33 - 706 AAA_10 PF12846.2 304 3.8e-10 33.6 0.1 3 3 1.1e-07 1.2e-05 18.8 0.0 217 300 411 494 368 497 0.84 # 24767 # 26884 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_17 - 218 Methyltransf_31 PF13847.1 152 0.00019 15.0 0.0 1 2 0.00094 0.19 5.2 0.0 66 114 13 76 4 110 0.69 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_17 - 218 Methyltransf_31 PF13847.1 152 0.00019 15.0 0.0 2 2 0.00014 0.028 7.9 0.0 3 47 163 204 161 207 0.83 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_34 - 965 Viral_helicase1 PF01443.13 234 2.7e-05 17.7 0.8 1 2 3.2e-05 0.0065 9.9 0.3 2 105 454 577 453 596 0.74 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 3_34 - 965 Viral_helicase1 PF01443.13 234 2.7e-05 17.7 0.8 2 2 0.0017 0.35 4.2 0.0 213 234 883 911 716 911 0.80 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_7 - 579 DUF2075 PF09848.4 352 0.00036 13.5 0.0 1 1 2.6e-06 0.00053 12.9 0.0 2 29 31 56 30 91 0.80 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 4_7 - 579 TIP49 PF06068.8 398 0.0012 11.5 0.0 1 1 9.4e-06 0.0019 10.8 0.0 50 76 30 56 18 72 0.84 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 3_33 - 706 TrwB_AAD_bind PF10412.4 386 4.1e-139 457.3 0.0 1 1 4.9e-141 5.1e-139 457.0 0.0 2 386 171 557 170 557 0.99 # 24767 # 26884 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 4_7 - 579 TrwB_AAD_bind PF10412.4 386 0.00038 13.0 0.0 1 1 6.2e-06 0.00064 12.3 0.0 11 48 26 63 20 80 0.88 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 3_34 - 965 AAA_11 PF13086.1 236 0.0002 14.9 5.2 1 2 1.9e-05 0.0039 10.7 0.1 2 43 434 476 433 528 0.74 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 3_34 - 965 AAA_11 PF13086.1 236 0.0002 14.9 5.2 2 2 0.00073 0.15 5.5 0.1 215 232 558 575 528 577 0.70 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_7 - 579 CPT PF07931.7 174 0.00015 15.4 0.4 1 1 2.3e-06 0.00046 13.7 0.4 3 136 32 163 30 195 0.72 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 3_33 - 706 T4SS-DNA_transf PF02534.9 469 3.7e-14 46.0 0.0 1 2 0.01 2.1 0.7 0.0 47 85 186 227 142 259 0.68 # 24767 # 26884 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_33 - 706 T4SS-DNA_transf PF02534.9 469 3.7e-14 46.0 0.0 2 2 1.4e-15 2.9e-13 43.1 0.0 259 450 373 562 295 577 0.91 # 24767 # 26884 # 1 # ID=3_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_17 - 218 MethyltransfD12 PF02086.10 260 0.0029 11.0 0.0 1 2 0.082 17 -1.4 0.0 183 189 26 32 16 50 0.66 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_17 - 218 MethyltransfD12 PF02086.10 260 0.0029 11.0 0.0 2 2 4.8e-05 0.0098 9.2 0.0 20 46 163 189 149 203 0.78 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_34 - 965 PIF1 PF05970.9 364 1.1e-05 18.4 0.3 1 2 6.2e-07 6.4e-05 15.9 0.0 14 117 442 547 436 563 0.77 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 3_34 - 965 PIF1 PF05970.9 364 1.1e-05 18.4 0.3 2 2 0.049 5 -0.2 0.1 266 307 671 714 646 733 0.71 # 26891 # 29785 # 1 # ID=3_34;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 4_28 - 865 PIF1 PF05970.9 364 0.0018 11.1 0.0 1 1 2.8e-05 0.0029 10.5 0.0 25 53 493 521 480 527 0.86 # 21368 # 23962 # -1 # ID=4_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 7_2 - 1050 tRNA_anti-codon PF01336.20 75 2.9e-07 24.3 0.0 1 1 3.4e-09 6.9e-07 23.0 0.0 4 60 962 1020 949 1033 0.81 # 414 # 3563 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.667 3_17 - 218 Methyltransf_15 PF09445.5 164 0.00016 15.2 0.0 1 2 0.028 5.7 0.4 0.0 55 79 6 29 3 33 0.88 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 3_17 - 218 Methyltransf_15 PF09445.5 164 0.00016 15.2 0.0 2 2 6.1e-06 0.0013 12.3 0.0 3 38 166 201 164 206 0.89 # 14655 # 15308 # 1 # ID=3_17;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 4_7 - 579 APS_kinase PF01583.15 157 0.00039 14.0 0.0 1 1 4.1e-06 0.00084 12.9 0.0 3 47 31 74 29 87 0.87 # 2805 # 4541 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bbba35f8-dd6a-416c-89bc-e4fa283056c4 # Target file: checkm_output/bins/pGCA_001484665.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001484665.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bbba35f8-dd6a-416c-89bc-e4fa283056c4 checkm_output/bins/pGCA_001484665.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:14 2020 # [ok]