# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_5 - 217 cobW PF02492.14 178 0.00014 13.8 0.1 1 2 7.3e-06 0.00052 11.9 0.1 3 22 32 51 30 70 0.84 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_5 - 217 cobW PF02492.14 178 0.00014 13.8 0.1 2 2 0.082 5.9 -1.3 0.0 40 62 186 208 172 209 0.87 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_26 - 385 Saccharop_dh PF03435.13 386 7.4e-06 17.5 0.2 1 1 1.8e-07 1.3e-05 16.8 0.2 1 49 193 237 193 248 0.89 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 2_7 - 399 ABC_ATPase PF09818.4 448 2.9e-06 18.5 0.3 1 2 0.0018 0.13 3.1 0.1 241 266 51 77 40 85 0.88 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 ABC_ATPase PF09818.4 448 2.9e-06 18.5 0.3 2 2 1.8e-06 0.00013 13.1 0.0 322 372 165 214 158 254 0.82 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_1 - 287 MipZ PF09140.6 261 5e-11 34.6 0.2 1 2 8.8e-10 6.3e-08 24.4 0.2 2 57 18 72 17 102 0.77 # 321 # 1181 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 2_1 - 287 MipZ PF09140.6 261 5e-11 34.6 0.2 2 2 7.5e-05 0.0054 8.2 0.0 76 122 119 165 95 178 0.80 # 321 # 1181 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 2_1 - 287 YhjQ PF06564.7 244 1.3e-08 26.9 0.0 1 1 3.5e-10 2.5e-08 26.0 0.0 10 147 25 171 17 179 0.75 # 321 # 1181 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_26 - 385 3HCDH_N PF02737.13 180 5.2e-05 15.4 0.1 1 1 1.3e-06 9.3e-05 14.6 0.1 1 41 192 232 192 266 0.90 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 3_5 - 217 NB-ARC PF00931.17 287 0.00031 12.1 0.0 1 1 8.3e-06 0.0006 11.1 0.0 11 40 21 50 7 57 0.78 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_7 - 399 AAA_22 PF13401.1 131 1.4e-06 20.9 0.3 1 3 4.5e-05 0.0016 11.0 0.0 4 26 55 77 52 119 0.87 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 AAA_22 PF13401.1 131 1.4e-06 20.9 0.3 2 3 0.0023 0.084 5.5 0.1 79 124 176 224 121 231 0.83 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 AAA_22 PF13401.1 131 1.4e-06 20.9 0.3 3 3 0.077 2.8 0.6 0.0 62 99 338 378 296 392 0.70 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 3_5 - 217 AAA_22 PF13401.1 131 3.1e-05 16.6 0.3 1 1 5.7e-06 0.00021 13.9 0.3 5 100 30 162 25 191 0.65 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_5 - 217 AAA_15 PF13175.1 415 3.6e-07 21.9 0.7 1 2 1.6e-05 0.00056 11.4 0.1 8 57 14 88 5 120 0.58 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_5 - 217 AAA_15 PF13175.1 415 3.6e-07 21.9 0.7 2 2 8.5e-05 0.003 9.0 0.0 371 415 149 193 144 193 0.81 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_7 - 399 AAA_15 PF13175.1 415 1.9e-06 19.5 0.9 1 2 2.5e-05 0.00091 10.7 0.3 3 49 5 82 3 112 0.63 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 AAA_15 PF13175.1 415 1.9e-06 19.5 0.9 2 2 0.00026 0.0094 7.4 0.0 371 407 184 221 165 227 0.87 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_26 - 385 NAD_binding_7 PF13241.1 103 6.1e-07 22.2 0.4 1 1 3.9e-08 2.8e-06 20.0 0.1 6 75 189 261 186 288 0.73 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 2_7 - 399 AAA_17 PF13207.1 121 1.8e-05 18.0 0.1 1 2 2.3e-06 0.00017 14.9 0.0 3 43 59 97 57 150 0.70 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 AAA_17 PF13207.1 121 1.8e-05 18.0 0.1 2 2 0.084 6 0.2 0.2 15 62 176 213 175 275 0.61 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 3_5 - 217 AAA_21 PF13304.1 303 9.9e-19 60.7 3.0 1 2 4.9e-08 1.8e-06 20.5 0.6 3 24 33 54 31 95 0.77 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_5 - 217 AAA_21 PF13304.1 303 9.9e-19 60.7 3.0 2 2 3.4e-14 1.2e-12 40.7 0.1 215 302 128 193 87 194 0.80 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_7 - 399 AAA_21 PF13304.1 303 5.7e-10 32.0 0.3 1 2 5.6e-06 0.0002 13.8 0.2 2 40 58 94 57 125 0.70 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 AAA_21 PF13304.1 303 5.7e-10 32.0 0.3 2 2 8.9e-07 3.2e-05 16.4 0.0 220 285 149 211 96 227 0.78 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 3_5 - 217 Miro PF08477.8 119 0.0003 13.8 0.1 1 1 1e-05 0.00074 12.5 0.0 4 49 34 78 32 111 0.85 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_1 - 287 ArsA_ATPase PF02374.10 305 3.8e-09 28.4 0.2 1 1 1.3e-10 9.6e-09 27.1 0.2 8 136 24 151 17 154 0.75 # 321 # 1181 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 3_5 - 217 T2SE PF00437.15 272 5.3e-07 21.2 0.2 1 1 1.2e-08 8.8e-07 20.4 0.2 112 160 13 61 4 63 0.85 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_26 - 385 AdoHcyase_NAD PF00670.16 162 8e-11 34.5 0.5 1 1 2.2e-12 1.6e-10 33.5 0.5 21 94 188 262 182 329 0.82 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 2_7 - 399 G-alpha PF00503.15 389 0.00054 11.1 0.0 1 1 1.2e-05 0.00089 10.4 0.0 62 87 59 84 31 131 0.84 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_26 - 385 Shikimate_DH PF01488.15 135 2.9e-06 19.9 0.1 1 1 1e-07 7.5e-06 18.5 0.1 10 80 188 251 181 279 0.73 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_26 - 385 F420_oxidored PF03807.12 96 4.6e-06 19.5 0.2 1 1 2e-07 1.5e-05 17.9 0.2 2 52 193 238 192 262 0.81 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_26 - 385 FAD_binding_3 PF01494.14 356 0.00037 12.0 0.4 1 1 8.1e-06 0.00058 11.4 0.4 3 46 192 235 191 238 0.92 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 3_5 - 217 SMC_N PF02463.14 220 7e-09 27.6 2.1 1 1 2.2e-08 7.8e-07 20.9 2.1 24 206 29 198 14 209 0.71 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_7 - 399 SMC_N PF02463.14 220 8.9e-05 14.2 4.7 1 1 5.7e-06 0.0002 13.0 2.3 26 197 57 222 46 244 0.78 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_1 - 287 Fer4_NifH PF00142.13 273 6.2e-08 24.5 2.0 1 2 1.2e-09 8.5e-08 24.1 0.3 8 57 25 76 18 97 0.83 # 321 # 1181 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 2_1 - 287 Fer4_NifH PF00142.13 273 6.2e-08 24.5 2.0 2 2 0.042 3 -0.7 0.1 201 248 197 243 181 270 0.65 # 321 # 1181 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 3_5 - 217 Arch_ATPase PF01637.13 234 5.2e-05 15.4 0.4 1 1 6.8e-06 0.00024 13.2 0.4 20 44 29 53 19 199 0.64 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_7 - 399 Arch_ATPase PF01637.13 234 0.00017 13.7 0.6 1 2 0.00042 0.015 7.4 0.0 20 42 55 77 49 105 0.84 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 Arch_ATPase PF01637.13 234 0.00017 13.7 0.6 2 2 0.0068 0.24 3.4 0.0 121 163 186 223 173 226 0.86 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 AAA_16 PF13191.1 185 4.3e-05 16.0 0.2 1 1 1.6e-06 0.00011 14.6 0.2 22 50 53 81 46 222 0.92 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 3_5 - 217 AAA_23 PF13476.1 202 1.4e-06 21.2 2.3 1 1 4.5e-08 1.6e-06 21.0 2.3 17 40 24 50 4 196 0.90 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_7 - 399 AAA_23 PF13476.1 202 1.3e-05 18.0 0.0 1 1 9.1e-07 3.3e-05 16.7 0.0 18 40 54 76 40 126 0.87 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 AAA_18 PF13238.1 129 1.2e-06 21.4 0.2 1 2 1.3e-05 0.00097 11.9 0.0 2 42 59 103 59 136 0.75 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 AAA_18 PF13238.1 129 1.2e-06 21.4 0.2 2 2 0.00044 0.031 7.0 0.1 46 94 191 237 175 269 0.85 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_1 - 287 CbiA PF01656.18 195 1.3e-29 95.5 0.5 1 1 2.2e-31 1.6e-29 95.1 0.5 1 190 19 240 19 245 0.81 # 321 # 1181 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 3_5 - 217 KaiC PF06745.8 227 7.1e-05 14.4 0.1 1 2 5.5e-05 0.004 8.7 0.0 9 35 20 45 7 53 0.86 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_5 - 217 KaiC PF06745.8 227 7.1e-05 14.4 0.1 2 2 0.0021 0.15 3.5 0.0 140 184 169 211 149 215 0.76 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_5 - 217 AAA_14 PF13173.1 128 2.5e-05 16.6 0.9 1 2 5.4e-05 0.0039 9.6 0.0 2 23 29 50 28 79 0.81 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_5 - 217 AAA_14 PF13173.1 128 2.5e-05 16.6 0.9 2 2 0.00098 0.071 5.5 0.1 20 106 97 197 93 210 0.61 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_7 - 399 AAA_29 PF13555.1 62 1e-05 17.5 0.1 1 1 6.6e-07 2.4e-05 16.3 0.1 16 41 49 73 44 85 0.78 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 3_5 - 217 AAA_29 PF13555.1 62 3.3e-05 15.9 0.1 1 1 2.2e-06 7.8e-05 14.7 0.1 17 49 24 55 17 63 0.78 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_5 - 217 AAA PF00004.24 132 0.00012 14.8 0.3 1 1 3.3e-06 0.00024 13.8 0.3 3 37 34 70 32 190 0.82 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_7 - 399 MMR_HSR1 PF01926.18 116 0.0008 11.8 0.9 1 1 4e-05 0.0029 10.1 0.3 2 20 58 76 57 222 0.83 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 DUF258 PF03193.11 161 9.3e-06 17.4 0.3 1 1 3.6e-07 2.6e-05 15.9 0.2 23 66 42 86 22 107 0.75 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_26 - 385 NAD_binding_2 PF03446.10 163 1.3e-06 20.7 0.0 1 1 4e-08 2.9e-06 19.7 0.0 3 63 192 252 190 287 0.85 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 2_1 - 287 AAA_31 PF13614.1 157 9.3e-08 24.6 0.3 1 1 8.9e-09 6.4e-07 21.9 0.3 9 135 25 159 18 179 0.64 # 321 # 1181 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 3_5 - 217 NTPase_1 PF03266.10 168 8.9e-05 14.7 0.3 1 2 4.9e-05 0.0035 9.5 0.1 3 36 33 68 31 86 0.78 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 3_5 - 217 NTPase_1 PF03266.10 168 8.9e-05 14.7 0.3 2 2 0.0032 0.23 3.6 0.0 89 135 141 190 101 209 0.78 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 2_7 - 399 AAA_33 PF13671.1 143 0.00026 13.3 0.0 1 1 8.4e-06 0.0006 12.1 0.0 1 19 57 75 57 115 0.89 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_26 - 385 2-Hacid_dh_C PF02826.14 178 1.2e-07 23.5 0.1 1 2 0.013 0.95 1.0 0.0 108 141 61 96 57 107 0.83 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_26 - 385 2-Hacid_dh_C PF02826.14 178 1.2e-07 23.5 0.1 2 2 2e-08 1.5e-06 19.9 0.1 30 95 184 250 153 257 0.78 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 2_7 - 399 AAA_30 PF13604.1 196 6.7e-05 15.0 0.0 1 1 3.4e-06 0.00025 13.1 0.0 15 48 52 85 46 104 0.77 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_26 - 385 ApbA PF02558.11 151 3.9e-06 18.8 0.1 1 1 1e-07 7.4e-06 17.9 0.1 1 48 193 242 193 269 0.87 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_26 - 385 ELFV_dehydrog PF00208.16 244 7.8e-05 14.7 0.3 1 1 4.2e-06 0.0003 12.8 0.1 28 63 186 220 173 269 0.85 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 2_7 - 399 ABC_tran PF00005.22 137 6.5e-34 109.6 0.0 1 1 3.4e-35 1.2e-33 108.7 0.0 2 136 46 193 45 194 0.93 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 3_5 - 217 ABC_tran PF00005.22 137 7.1e-32 103.0 0.0 1 1 2.7e-33 9.9e-32 102.6 0.0 1 137 19 159 19 159 0.97 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_26 - 385 THF_DHG_CYH_C PF02882.14 161 8.2e-06 17.4 0.1 1 2 0.054 3.9 -1.0 0.0 85 112 85 112 66 127 0.79 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_26 - 385 THF_DHG_CYH_C PF02882.14 161 8.2e-06 17.4 0.1 2 2 5.7e-07 4.1e-05 15.1 0.0 26 77 180 230 177 259 0.92 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_26 - 385 UDPG_MGDP_dh_N PF03721.9 185 0.00041 12.2 0.6 1 1 1.4e-05 0.001 10.9 0.5 2 38 192 228 191 249 0.83 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 2_7 - 399 AAA_19 PF13245.1 76 0.00012 14.3 0.0 1 1 8.8e-06 0.00032 12.9 0.0 9 37 54 81 47 99 0.84 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 3_5 - 217 AAA_19 PF13245.1 76 0.00046 12.4 0.0 1 1 3e-05 0.0011 11.2 0.0 9 35 28 53 21 71 0.83 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 1_26 - 385 NAD_binding_10 PF13460.1 183 3.2e-06 19.7 0.1 1 1 8.1e-08 5.8e-06 18.8 0.1 1 74 193 260 193 284 0.84 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 2_7 - 399 AAA_10 PF12846.2 304 0.00036 12.4 0.3 1 2 2.2e-05 0.0016 10.3 0.0 4 23 58 77 55 88 0.83 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 AAA_10 PF12846.2 304 0.00036 12.4 0.3 2 2 0.048 3.4 -0.6 0.0 215 263 178 226 96 248 0.63 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 SbcCD_C PF13558.1 90 0.00022 13.6 0.1 1 1 6.4e-06 0.00046 12.6 0.1 61 88 181 208 163 210 0.79 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_26 - 385 DAO PF01266.19 358 0.00021 12.7 0.1 1 1 4.1e-06 0.00029 12.2 0.1 1 33 192 224 192 273 0.92 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_26 - 385 FMO-like PF00743.14 532 5.5e-05 13.9 0.1 1 1 1.1e-06 7.9e-05 13.4 0.1 181 288 188 295 179 323 0.72 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_26 - 385 TrkA_N PF02254.13 116 1.7e-07 23.7 1.2 1 1 1.2e-08 4.3e-07 22.4 0.4 1 44 193 236 193 263 0.84 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_15 - 246 TrkA_N PF02254.13 116 3.5e-05 16.3 0.1 1 1 1.9e-06 6.9e-05 15.3 0.1 14 112 7 111 4 115 0.83 # 13392 # 14129 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.344 1_26 - 385 IlvN PF07991.7 165 1.3e-07 23.5 0.1 1 1 4.7e-09 3.4e-07 22.2 0.1 2 53 188 238 187 267 0.84 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 1_26 - 385 AlaDh_PNT_C PF01262.16 168 0.00015 13.8 0.3 1 1 6.2e-06 0.00045 12.3 0.1 21 57 191 227 172 246 0.86 # 19611 # 20765 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.339 2_7 - 399 AAA_24 PF13479.1 213 0.00052 12.0 0.0 1 2 0.006 0.43 2.5 0.0 6 23 58 75 55 86 0.87 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 2_7 - 399 AAA_24 PF13479.1 213 0.00052 12.0 0.0 2 2 0.00028 0.02 6.9 0.0 111 137 200 226 198 242 0.84 # 5579 # 6775 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 3_5 - 217 NACHT PF05729.7 166 0.00079 11.5 0.1 1 1 1.1e-05 0.00079 11.5 0.1 5 21 34 50 30 58 0.89 # 2638 # 3288 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.343 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/efd9073a-a339-4a0e-a434-4c8d3b11ba4f # Target file: checkm_output/bins/pGCA_001484005.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001484005.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/efd9073a-a339-4a0e-a434-4c8d3b11ba4f checkm_output/bins/pGCA_001484005.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:12 2020 # [ok]