# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 216 cobW PF02492.14 178 0.00028 12.7 0.1 1 1 1.1e-05 0.00039 12.3 0.1 73 127 51 112 11 154 0.72 # 5115 # 5762 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.444 1_48 - 541 cobW PF02492.14 178 0.00032 12.6 0.0 1 1 2.2e-05 0.00078 11.3 0.0 3 23 245 265 244 323 0.85 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_60 - 225 IstB_IS21 PF01695.12 178 3.1e-05 15.8 0.0 1 1 6.5e-07 4.5e-05 15.3 0.0 22 70 116 162 106 188 0.80 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_2 - 192 MipZ PF09140.6 261 1e-07 23.7 0.0 1 2 7.4e-09 5.2e-07 21.3 0.0 2 40 3 41 2 50 0.88 # 141 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_2 - 192 MipZ PF09140.6 261 1e-07 23.7 0.0 2 2 0.031 2.2 -0.4 0.0 201 236 135 170 111 187 0.56 # 141 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_60 - 225 AAA_2 PF07724.9 171 0.00027 13.3 0.0 1 1 6.2e-06 0.00044 12.6 0.0 4 60 140 197 137 203 0.85 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_62 - 805 DUF87 PF01935.12 229 3.8e-08 25.8 0.0 1 1 4.3e-09 1e-07 24.4 0.0 18 59 451 490 436 492 0.82 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_32 - 656 DUF87 PF01935.12 229 1.1e-06 21.0 0.0 1 1 9.4e-08 2.2e-06 20.0 0.0 8 63 178 232 173 320 0.85 # 21205 # 23172 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.470 1_60 - 225 DUF87 PF01935.12 229 0.00017 13.9 0.0 1 1 1.1e-05 0.00025 13.3 0.0 24 58 140 175 119 184 0.84 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_60 - 225 Septin PF00735.13 281 0.00052 11.4 0.0 1 1 1e-05 0.00071 11.0 0.0 6 32 141 167 138 202 0.72 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_62 - 805 AAA_22 PF13401.1 131 1.9e-07 23.7 0.0 1 2 0.036 0.85 2.2 0.0 70 122 223 277 196 282 0.86 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_62 - 805 AAA_22 PF13401.1 131 1.9e-07 23.7 0.0 2 2 1e-06 2.3e-05 16.9 0.0 5 32 455 482 451 515 0.84 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_48 - 541 AAA_22 PF13401.1 131 2.1e-05 17.1 0.0 1 1 1.1e-05 0.00025 13.6 0.0 3 63 241 291 238 305 0.75 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_60 - 225 AAA_22 PF13401.1 131 0.00037 13.1 0.0 1 1 2.6e-05 0.0006 12.4 0.0 4 37 139 186 133 212 0.68 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_62 - 805 AAA_17 PF13207.1 121 2e-05 17.8 0.0 1 1 1.1e-05 0.00026 14.2 0.0 3 57 458 536 457 580 0.64 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_60 - 225 AAA_17 PF13207.1 121 5.3e-05 16.5 0.0 1 1 4.9e-06 0.00011 15.4 0.0 2 33 142 172 141 219 0.75 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_48 - 541 AAA_17 PF13207.1 121 7.3e-05 16.0 0.0 1 1 1.1e-05 0.00025 14.3 0.0 2 22 245 265 245 322 0.83 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 192 ArsA_ATPase PF02374.10 305 1.5e-06 19.8 0.0 1 1 4.2e-08 2.9e-06 18.9 0.0 8 42 9 43 1 53 0.89 # 141 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_60 - 225 T2SE PF00437.15 272 7.4e-57 184.6 0.0 1 1 5.4e-58 9.4e-57 184.3 0.0 7 202 19 216 14 219 0.96 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_48 - 541 T2SE PF00437.15 272 2.8e-31 100.7 0.0 1 1 2.7e-32 4.8e-31 100.0 0.0 76 254 191 374 98 392 0.78 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_59 - 100 T2SE PF00437.15 272 2.3e-22 71.5 0.1 1 1 1.6e-23 2.7e-22 71.3 0.1 203 271 1 69 1 70 0.95 # 45138 # 45437 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.577 1_62 - 805 T2SE PF00437.15 272 5.2e-05 14.6 0.0 1 1 5.8e-06 0.0001 13.7 0.0 121 155 447 481 434 490 0.82 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_60 - 225 Zeta_toxin PF06414.7 201 7.5e-06 17.5 0.0 1 1 1.5e-07 1.1e-05 17.0 0.0 16 80 139 198 124 214 0.67 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_48 - 541 SMC_N PF02463.14 220 0.0005 11.7 0.1 1 1 2.2e-05 0.0015 10.1 0.0 26 44 244 262 232 295 0.88 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 192 Fer4_NifH PF00142.13 273 2.5e-06 19.2 0.0 1 2 9.4e-08 6.6e-06 17.8 0.0 7 45 9 47 2 75 0.83 # 141 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_2 - 192 Fer4_NifH PF00142.13 273 2.5e-06 19.2 0.0 2 2 0.062 4.4 -1.3 0.0 198 219 135 156 106 183 0.64 # 141 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_62 - 805 Arch_ATPase PF01637.13 234 9.1e-05 14.6 0.0 1 3 0.061 4.2 -0.7 0.0 50 150 107 201 99 215 0.57 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_62 - 805 Arch_ATPase PF01637.13 234 9.1e-05 14.6 0.0 2 3 2.2e-05 0.0015 10.6 0.0 23 56 457 490 454 500 0.82 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_62 - 805 Arch_ATPase PF01637.13 234 9.1e-05 14.6 0.0 3 3 0.07 4.9 -0.9 0.0 186 231 606 649 582 653 0.78 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_48 - 541 AAA_16 PF13191.1 185 5.7e-06 18.8 0.0 1 1 9.5e-07 2.2e-05 16.9 0.0 21 51 239 269 229 298 0.79 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_60 - 225 AAA_16 PF13191.1 185 0.00024 13.5 0.1 1 1 3.3e-05 0.00077 11.9 0.1 23 48 138 163 125 174 0.87 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_62 - 805 AAA_16 PF13191.1 185 0.00048 12.5 0.0 1 1 7.5e-05 0.0017 10.7 0.0 26 51 456 481 446 580 0.90 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_62 - 805 AAA_23 PF13476.1 202 4.1e-06 19.6 0.0 1 1 2.8e-07 9.7e-06 18.4 0.0 20 38 455 473 443 476 0.83 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_48 - 541 AAA_23 PF13476.1 202 0.00029 13.6 0.1 1 1 1.8e-05 0.00061 12.5 0.1 22 47 245 266 235 441 0.78 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_48 - 541 AAA_18 PF13238.1 129 1.8e-06 20.7 0.0 1 1 1.5e-07 5.3e-06 19.2 0.0 1 42 245 286 245 309 0.84 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_60 - 225 AAA_18 PF13238.1 129 2.6e-05 16.9 0.0 1 1 1.3e-06 4.4e-05 16.2 0.0 1 37 142 174 142 202 0.74 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_2 - 192 CbiA PF01656.18 195 4e-15 48.1 0.1 1 2 4.6e-15 3.2e-13 41.9 0.0 1 41 4 44 4 56 0.94 # 141 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_2 - 192 CbiA PF01656.18 195 4e-15 48.1 0.1 2 2 0.0034 0.24 3.1 0.1 120 170 87 134 56 156 0.67 # 141 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_60 - 225 KaiC PF06745.8 227 1.2e-05 16.9 0.0 1 1 2.4e-07 1.7e-05 16.4 0.0 14 42 134 162 109 194 0.76 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_62 - 805 AAA_29 PF13555.1 62 1.1e-06 20.6 0.0 1 1 1.2e-07 2.8e-06 19.3 0.0 20 44 452 474 445 491 0.75 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_48 - 541 AAA_29 PF13555.1 62 1.5e-05 17.0 0.0 1 1 1.4e-06 3.3e-05 15.8 0.0 21 43 241 262 233 264 0.81 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_60 - 225 AAA_29 PF13555.1 62 4e-05 15.5 0.0 1 1 3.2e-06 7.4e-05 14.7 0.0 20 43 138 159 129 171 0.83 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_60 - 225 Sigma54_activat PF00158.21 168 8.5e-05 14.5 0.0 1 1 2e-06 0.00014 13.8 0.0 9 48 126 166 119 205 0.81 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_48 - 541 MMR_HSR1 PF01926.18 116 0.00054 12.4 0.0 1 1 1.8e-05 0.0013 11.2 0.0 2 36 245 278 244 376 0.69 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_62 - 805 DUF258 PF03193.11 161 0.00011 13.8 0.0 1 1 3.4e-06 0.00024 12.7 0.0 28 59 446 478 429 511 0.81 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_32 - 656 TraG-D_C PF12696.2 128 1.6e-12 39.8 0.0 1 1 6.9e-14 4.8e-12 38.3 0.0 2 115 405 518 404 531 0.81 # 21205 # 23172 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.470 1_2 - 192 AAA_31 PF13614.1 157 3.1e-07 22.8 0.0 1 1 8.4e-09 5.9e-07 21.9 0.0 1 41 2 42 2 59 0.88 # 141 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.411 1_60 - 225 AAA_33 PF13671.1 143 0.00017 13.9 0.0 1 1 4.7e-06 0.00033 13.0 0.0 2 65 142 203 142 216 0.56 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_60 - 225 AAA_30 PF13604.1 196 0.00038 12.4 0.0 1 1 8.7e-06 0.00061 11.8 0.0 2 45 124 176 123 221 0.69 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_60 - 225 FtsK_SpoIIIE PF01580.13 205 4.3e-09 28.5 0.0 1 1 2.2e-10 7.6e-09 27.7 0.0 35 92 135 192 116 209 0.77 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_62 - 805 FtsK_SpoIIIE PF01580.13 205 1.4e-05 17.0 0.0 1 1 7.8e-07 2.7e-05 16.1 0.0 34 77 450 490 436 505 0.73 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_62 - 805 ABC_tran PF00005.22 137 1.3e-06 21.1 0.0 1 1 1.3e-07 4.5e-06 19.4 0.0 4 36 447 479 445 496 0.86 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_48 - 541 ABC_tran PF00005.22 137 9.9e-05 15.1 0.0 1 1 9.1e-06 0.00032 13.4 0.0 14 50 245 281 235 334 0.81 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_48 - 541 TIGR03263 TIGR03263 180 0.00045 12.0 0.0 1 1 1.3e-05 0.00094 10.9 0.0 4 30 245 271 243 276 0.88 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_60 - 225 AAA_19 PF13245.1 76 0.00026 13.2 0.0 1 1 9.3e-06 0.00065 11.9 0.0 4 33 133 161 130 181 0.68 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_62 - 805 AAA_10 PF12846.2 304 9.8e-31 99.6 0.0 1 1 1.5e-31 2.7e-30 98.2 0.0 2 292 455 717 455 730 0.82 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_32 - 656 AAA_10 PF12846.2 304 6.9e-14 44.3 0.0 1 1 3.7e-13 6.5e-12 37.8 0.0 4 297 196 483 193 487 0.75 # 21205 # 23172 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.470 1_60 - 225 AAA_10 PF12846.2 304 3.3e-05 15.8 0.0 1 1 4.7e-06 8.2e-05 14.5 0.0 2 36 140 177 139 187 0.78 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_48 - 541 AAA_10 PF12846.2 304 0.00062 11.6 0.0 1 1 8.4e-05 0.0015 10.4 0.0 3 22 244 263 242 284 0.85 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_60 - 225 ResIII PF04851.10 184 0.00029 13.1 0.0 1 1 5.6e-06 0.00039 12.7 0.0 15 62 131 181 101 204 0.80 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_60 - 225 DUF2075 PF09848.4 352 2e-05 16.0 0.0 1 1 3.7e-07 2.6e-05 15.7 0.0 1 45 139 183 139 212 0.69 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_60 - 225 TIP49 PF06068.8 398 3.7e-05 14.9 0.0 1 1 7.6e-07 5.3e-05 14.4 0.0 32 76 125 165 116 179 0.87 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_60 - 225 DEAD PF00270.24 169 2.8e-07 22.6 0.0 1 1 6e-09 4.2e-07 22.0 0.0 10 70 135 195 126 219 0.78 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_48 - 541 DUF815 PF05673.8 250 0.00021 12.6 0.4 1 2 2.4e-05 0.0017 9.7 0.0 55 78 244 267 232 275 0.87 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_48 - 541 DUF815 PF05673.8 250 0.00021 12.6 0.4 2 2 0.018 1.3 0.2 0.1 101 121 470 490 462 494 0.82 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_20 - 121 Methyltransf_27 PF13708.1 194 7.2e-05 14.8 0.1 1 1 1.4e-06 9.7e-05 14.3 0.1 67 125 41 100 9 101 0.89 # 12813 # 13175 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.328 1_32 - 656 TrwB_AAD_bind PF10412.4 386 1.7e-11 35.7 0.0 1 2 1.6e-05 0.00037 11.5 0.0 12 54 190 232 184 346 0.85 # 21205 # 23172 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.470 1_32 - 656 TrwB_AAD_bind PF10412.4 386 1.7e-11 35.7 0.0 2 2 1e-08 2.4e-07 22.0 0.0 245 379 405 543 376 550 0.76 # 21205 # 23172 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.470 1_60 - 225 TrwB_AAD_bind PF10412.4 386 3.7e-06 18.1 0.0 1 1 2.4e-07 5.7e-06 17.5 0.0 14 50 138 176 128 184 0.83 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_62 - 805 TrwB_AAD_bind PF10412.4 386 4.9e-05 14.4 0.0 1 1 4.6e-06 0.00011 13.3 0.0 15 52 454 492 447 498 0.82 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_60 - 225 Sigma54_activ_2 PF14532.1 138 0.00013 14.4 0.0 1 1 3.1e-06 0.00021 13.7 0.0 5 55 123 172 120 201 0.77 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_32 - 656 T4SS-DNA_transf PF02534.9 469 2.4e-12 38.5 0.0 1 2 1e-06 7.3e-05 13.8 0.0 34 84 175 235 129 245 0.80 # 21205 # 23172 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.470 1_32 - 656 T4SS-DNA_transf PF02534.9 469 2.4e-12 38.5 0.0 2 2 2.6e-09 1.8e-07 22.4 0.0 253 438 355 543 335 555 0.84 # 21205 # 23172 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.470 1_60 - 225 Pox_A32 PF04665.7 241 0.00046 11.9 0.1 1 1 1.1e-05 0.00078 11.2 0.1 9 37 135 163 129 191 0.89 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_60 - 225 GTP_EFTU PF00009.22 188 0.00024 12.9 0.1 1 1 4.6e-06 0.00032 12.5 0.1 3 35 139 171 137 209 0.81 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_48 - 541 AAA_25 PF13481.1 194 1.9e-06 19.8 0.0 1 2 0.067 1.6 0.5 0.0 80 149 91 158 78 171 0.63 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_48 - 541 AAA_25 PF13481.1 194 1.9e-06 19.8 0.0 2 2 9.5e-07 2.2e-05 16.3 0.0 9 54 218 263 213 279 0.91 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_62 - 805 AAA_25 PF13481.1 194 4e-05 15.5 0.4 1 1 1.3e-05 0.00029 12.6 0.0 34 57 455 478 435 494 0.83 # 46852 # 49266 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_60 - 225 AAA_25 PF13481.1 194 0.00045 12.0 0.0 1 1 2.9e-05 0.00069 11.4 0.0 24 58 130 164 110 205 0.85 # 45412 # 46086 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_48 - 541 AAA_28 PF13521.1 163 0.0002 13.8 0.0 1 2 0.011 0.8 2.0 0.0 26 70 62 105 48 120 0.77 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_48 - 541 AAA_28 PF13521.1 163 0.0002 13.8 0.0 2 2 7.5e-05 0.0052 9.1 0.0 2 22 245 265 244 295 0.80 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_48 - 541 RNA12 PF10443.4 431 0.00039 11.3 0.0 1 1 1.1e-05 0.00077 10.4 0.0 19 39 244 262 234 276 0.80 # 34603 # 36225 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1f7fe55e-8777-4f99-820e-e86a12731ced # Target file: checkm_output/bins/pGCA_001433415.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001433415.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1f7fe55e-8777-4f99-820e-e86a12731ced checkm_output/bins/pGCA_001433415.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:05 2020 # [ok]