# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_37 - 215 Seryl_tRNA_N PF02403.17 108 0.0096 8.5 17.5 1 1 0.00035 0.027 7.1 17.5 33 99 49 121 28 125 0.71 # 29088 # 29732 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.355 2_14 - 263 MipZ PF09140.6 261 3.9e-13 41.5 0.5 1 1 4.1e-13 3.2e-11 35.3 0.2 2 136 4 155 3 178 0.69 # 11266 # 12054 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 2_14 - 263 YhjQ PF06564.7 244 8.8e-10 30.8 0.0 1 1 1.7e-11 1.3e-09 30.3 0.0 4 149 5 149 2 160 0.85 # 11266 # 12054 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_20 - 162 SSB PF00436.20 104 1.5e-40 129.8 0.6 1 1 2.7e-42 2.1e-40 129.4 0.6 1 104 2 103 2 103 0.98 # 13151 # 13636 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.436 1_31 - 130 MetW PF07021.7 193 0.00032 12.6 0.1 1 1 6.6e-06 0.00051 12.0 0.1 35 106 52 124 45 127 0.83 # 26061 # 26450 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=5bp;gc_cont=0.310 1_39 - 675 AAA_22 PF13401.1 131 0.00066 12.4 0.5 1 3 0.039 3 0.6 0.0 36 69 84 129 61 182 0.72 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_22 PF13401.1 131 0.00066 12.4 0.5 2 3 0.00039 0.03 7.0 0.0 7 28 270 291 264 310 0.89 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_22 PF13401.1 131 0.00066 12.4 0.5 3 3 0.05 3.9 0.2 0.0 88 110 525 561 498 580 0.70 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_17 PF13207.1 121 6.4e-05 16.3 0.1 1 2 1.8e-05 0.0014 12.0 0.0 6 31 274 295 271 399 0.67 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_17 PF13207.1 121 6.4e-05 16.3 0.1 2 2 0.084 6.5 0.2 0.0 50 97 449 489 425 556 0.71 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 2_14 - 263 ArsA_ATPase PF02374.10 305 9.5e-08 23.9 0.5 1 1 1.8e-08 1.4e-06 20.1 0.5 9 136 11 127 3 205 0.73 # 11266 # 12054 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 2_14 - 263 Fer4_NifH PF00142.13 273 1.4e-08 26.7 0.5 1 2 1.2e-09 9.5e-08 24.0 0.0 8 64 11 71 6 87 0.84 # 11266 # 12054 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 2_14 - 263 Fer4_NifH PF00142.13 273 1.4e-08 26.7 0.5 2 2 0.012 0.92 1.1 0.1 165 243 166 249 109 255 0.64 # 11266 # 12054 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_39 - 675 AAA_16 PF13191.1 185 0.00066 12.2 0.1 1 1 3e-05 0.0023 10.4 0.0 23 51 266 294 257 310 0.81 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_23 PF13476.1 202 0.00059 12.7 5.3 1 2 0.0034 0.26 4.1 0.6 153 201 102 181 8 184 0.60 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_23 PF13476.1 202 0.00059 12.7 5.3 2 2 7.9e-05 0.0061 9.4 0.4 22 156 270 523 267 574 0.50 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_18 PF13238.1 129 0.00054 12.8 2.4 1 1 1.7e-05 0.0013 11.6 0.0 3 23 272 301 271 355 0.76 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_36 - 287 AAA_13 PF13166.1 712 0.00018 12.5 18.6 1 1 3.2e-06 0.00025 12.1 18.6 342 470 123 280 72 285 0.57 # 28271 # 29131 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=7bp;gc_cont=0.338 2_14 - 263 CbiA PF01656.18 195 1.2e-40 131.5 0.7 1 1 1.9e-42 1.5e-40 131.2 0.7 2 190 6 218 5 223 0.85 # 11266 # 12054 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_39 - 675 AAA_14 PF13173.1 128 9.2e-05 14.9 1.7 1 2 0.00024 0.018 7.5 0.0 5 28 270 297 267 433 0.73 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_14 PF13173.1 128 9.2e-05 14.9 1.7 2 2 0.0013 0.1 5.0 0.1 50 102 527 587 467 605 0.70 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_29 PF13555.1 62 2.2e-05 16.5 0.1 1 1 6.7e-07 5.2e-05 15.3 0.1 9 40 256 284 254 291 0.81 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_15 - 236 tRNA-synt_1_2 PF13603.1 185 0.00017 13.4 0.1 1 1 5e-06 0.00039 12.3 0.0 15 65 61 112 53 132 0.82 # 10426 # 11133 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AAA;rbs_spacer=4bp;gc_cont=0.364 1_44 - 871 TraG-D_C PF12696.2 128 6.1e-33 106.0 2.9 1 1 9.2e-35 7.1e-33 105.8 0.3 1 125 594 710 594 713 0.89 # 36975 # 39587 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 2_14 - 263 AAA_31 PF13614.1 157 1.1e-13 43.9 0.0 1 1 3.3e-15 2.5e-13 42.8 0.0 1 155 3 154 3 156 0.79 # 11266 # 12054 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_39 - 675 AAA_30 PF13604.1 196 0.00048 12.3 0.0 1 1 1.4e-05 0.0011 11.1 0.0 22 51 271 300 262 315 0.88 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 FtsK_SpoIIIE PF01580.13 205 0.00097 11.1 2.0 1 2 0.0077 0.59 2.1 0.2 97 156 98 158 81 209 0.68 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 FtsK_SpoIIIE PF01580.13 205 0.00097 11.1 2.0 2 2 0.00014 0.011 7.8 0.1 23 60 246 289 233 294 0.69 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 Dynamin_N PF00350.18 168 0.0082 8.5 4.1 1 2 0.019 1.5 1.2 0.2 29 75 88 146 65 185 0.60 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 Dynamin_N PF00350.18 168 0.0082 8.5 4.1 2 2 0.00029 0.023 7.1 0.0 3 22 272 291 271 296 0.87 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 ABC_tran PF00005.22 137 8.8e-06 18.6 0.7 1 1 6.2e-07 4.8e-05 16.2 0.2 7 35 263 291 259 377 0.90 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_10 PF12846.2 304 8.6e-59 191.9 0.8 1 2 0.042 3.2 -0.4 0.0 102 127 105 151 22 210 0.64 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_39 - 675 AAA_10 PF12846.2 304 8.6e-59 191.9 0.8 2 2 1.1e-60 8.6e-59 191.9 0.8 2 302 268 629 267 631 0.92 # 30947 # 32971 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.389 1_37 - 215 DUF3584 PF12128.3 1201 0.0003 10.7 12.5 1 1 4.6e-06 0.00036 10.4 12.5 689 771 27 109 11 141 0.63 # 29088 # 29732 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.355 1_44 - 871 TrwB_AAD_bind PF10412.4 386 1.6e-18 58.9 0.1 1 2 0.00042 0.032 5.3 0.0 12 131 186 324 176 342 0.73 # 36975 # 39587 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_44 - 871 TrwB_AAD_bind PF10412.4 386 1.6e-18 58.9 0.1 2 2 5.3e-18 4.1e-16 51.0 0.0 215 364 564 710 527 725 0.76 # 36975 # 39587 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_44 - 871 T4SS-DNA_transf PF02534.9 469 7.6e-33 106.2 1.3 1 2 8.4e-14 6.5e-12 37.2 0.0 44 257 189 422 155 428 0.70 # 36975 # 39587 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_44 - 871 T4SS-DNA_transf PF02534.9 469 7.6e-33 106.2 1.3 2 2 6e-23 4.6e-21 67.4 0.3 260 444 549 732 541 744 0.84 # 36975 # 39587 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_37 - 215 RNA_pol_Rpb1_1 PF04997.7 337 0.0043 8.8 9.2 1 1 7.4e-05 0.0057 8.4 9.2 107 211 28 134 3 140 0.43 # 29088 # 29732 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=3bp;gc_cont=0.355 1_20 - 162 tRNA_anti-codon PF01336.20 75 5.7e-07 21.9 0.1 1 1 1.2e-08 9.2e-07 21.3 0.1 27 72 47 95 5 103 0.79 # 13151 # 13636 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.436 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7945c8e5-d8e1-4f35-8cc5-d83beb86138f # Target file: checkm_output/bins/pGCA_001412695.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001412695.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7945c8e5-d8e1-4f35-8cc5-d83beb86138f checkm_output/bins/pGCA_001412695.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:03 2020 # [ok]