# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 245 AAA_22 PF13401.1 131 8.7e-05 14.4 1.0 1 1 7.3e-06 0.00031 12.6 1.0 7 28 66 87 60 228 0.68 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_21 PF13304.1 303 1e-07 23.9 3.8 1 2 1.3e-05 0.00057 11.6 0.2 3 25 67 90 66 129 0.63 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_21 PF13304.1 303 1e-07 23.9 3.8 2 2 2e-06 8.6e-05 14.3 0.4 181 297 129 225 93 235 0.67 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 Miro PF08477.8 119 8e-05 14.9 0.0 1 1 4.8e-06 0.00021 13.5 0.0 1 25 65 89 65 134 0.81 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 MobB PF03205.9 140 4.6e-05 14.9 0.1 1 1 4.9e-06 0.00021 12.7 0.1 3 32 66 95 65 106 0.84 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 T2SE PF00437.15 272 2.3e-05 15.0 0.3 1 2 1.4e-06 6.2e-05 13.7 0.0 129 160 64 95 51 101 0.88 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 T2SE PF00437.15 272 2.3e-05 15.0 0.3 2 2 0.066 2.8 -1.6 0.1 101 139 163 200 135 223 0.62 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 Zeta_toxin PF06414.7 201 0.00032 11.5 0.1 1 1 2.2e-05 0.00096 10.0 0.0 19 48 66 96 59 117 0.86 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 12_3 - 87 SMC_N PF02463.14 220 3.1e-07 21.5 0.0 1 1 1.5e-08 3.2e-07 21.5 0.0 131 180 38 83 9 85 0.91 # 597 # 857 # -1 # ID=12_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 2_2 - 245 SMC_N PF02463.14 220 2.6e-05 15.2 1.6 1 1 2.5e-06 5.4e-05 14.2 1.6 28 195 67 225 57 242 0.70 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 Arch_ATPase PF01637.13 234 0.00019 12.8 0.6 1 1 1.4e-05 0.00058 11.3 0.6 23 68 66 111 60 219 0.64 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_16 PF13191.1 185 4e-06 18.6 0.1 1 1 1.2e-07 5.2e-06 18.2 0.1 24 56 63 95 57 216 0.83 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_23 PF13476.1 202 0.00018 13.5 7.4 1 1 8.4e-06 0.00036 12.6 7.4 18 133 62 221 36 239 0.61 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_18 PF13238.1 129 0.00011 14.3 1.2 1 1 5e-06 0.00022 13.3 1.2 1 23 66 96 66 241 0.79 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_29 PF13555.1 62 1.2e-07 23.0 0.1 1 1 5.4e-09 2.3e-07 22.0 0.1 19 40 60 80 54 100 0.80 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA PF00004.24 132 1.8e-05 16.7 1.7 1 1 2.9e-06 0.00012 14.0 1.7 1 26 66 113 66 224 0.53 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 Sigma54_activat PF00158.21 168 0.00017 12.8 0.0 1 1 7.8e-06 0.00034 11.8 0.0 23 51 64 92 55 102 0.80 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 MMR_HSR1 PF01926.18 116 5.6e-05 14.8 0.3 1 1 4.6e-06 0.0002 13.1 0.3 1 37 65 106 65 241 0.66 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 DUF258 PF03193.11 161 8.7e-07 20.0 0.1 1 1 4.4e-08 1.9e-06 18.9 0.1 33 74 60 102 36 109 0.86 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 NTPase_1 PF03266.10 168 6e-07 21.0 1.1 1 2 6.2e-07 2.7e-05 15.6 0.2 1 28 65 92 65 101 0.89 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 NTPase_1 PF03266.10 168 6e-07 21.0 1.1 2 2 0.0038 0.16 3.3 0.0 90 136 183 228 168 241 0.79 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_33 PF13671.1 143 0.00021 12.9 0.0 1 1 1.3e-05 0.00055 11.6 0.0 2 33 66 108 66 240 0.72 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 8_2 - 72 Ribosomal_S15 PF00312.17 83 0.00013 13.5 2.6 1 2 0.05 2.1 -0.0 0.0 65 78 4 17 2 20 0.81 # 435 # 650 # 1 # ID=8_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.241 8_2 - 72 Ribosomal_S15 PF00312.17 83 0.00013 13.5 2.6 2 2 9.8e-06 0.00042 11.8 2.5 19 66 21 69 7 70 0.82 # 435 # 650 # 1 # ID=8_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.241 2_2 - 245 AAA_30 PF13604.1 196 5.7e-05 14.5 0.0 1 2 8.1e-05 0.0035 8.6 0.0 20 43 65 88 56 104 0.76 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_30 PF13604.1 196 5.7e-05 14.5 0.0 2 2 0.0031 0.13 3.5 0.0 88 127 183 223 154 226 0.78 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 Dynamin_N PF00350.18 168 3.5e-05 15.4 5.4 1 3 0.083 3.6 -0.9 0.0 55 89 7 41 2 57 0.73 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 Dynamin_N PF00350.18 168 3.5e-05 15.4 5.4 2 3 0.00065 0.028 5.9 0.3 1 21 66 86 66 95 0.88 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 Dynamin_N PF00350.18 168 3.5e-05 15.4 5.4 3 3 1.8e-05 0.00078 11.0 0.2 60 136 148 224 120 235 0.81 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 ABC_tran PF00005.22 137 1.7e-29 94.6 0.1 1 1 1.3e-30 2.9e-29 93.9 0.1 6 136 58 198 55 199 0.89 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 12_3 - 87 ABC_tran PF00005.22 137 1.8e-09 29.8 0.0 1 1 8.3e-11 1.8e-09 29.8 0.0 95 137 30 72 1 72 0.79 # 597 # 857 # -1 # ID=12_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 2_2 - 245 AAA_19 PF13245.1 76 0.00031 12.2 0.0 1 1 1.4e-05 0.00059 11.3 0.0 8 32 61 84 58 103 0.81 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_10 PF12846.2 304 0.00013 13.1 0.2 1 1 3.7e-06 0.00016 12.9 0.2 5 40 67 102 64 216 0.91 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 SbcCD_C PF13558.1 90 0.00031 12.4 0.3 1 1 0.00011 0.0048 8.6 0.0 24 86 162 211 139 215 0.65 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 DUF815 PF05673.8 250 5.8e-06 17.1 0.0 1 1 2.6e-07 1.1e-05 16.1 0.0 52 83 62 93 57 108 0.85 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 TrwB_AAD_bind PF10412.4 386 4.3e-05 13.9 0.0 1 1 1.5e-06 6.5e-05 13.3 0.0 16 56 64 104 56 108 0.92 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 6_3 - 204 ArgK PF03308.11 267 0.019 5.4 8.3 1 1 0.00097 0.042 4.3 8.3 176 254 75 159 11 171 0.76 # 770 # 1381 # -1 # ID=6_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.325 2_2 - 245 PIF1 PF05970.9 364 4e-05 14.3 0.2 1 2 3.3e-06 0.00014 12.5 0.0 17 54 58 95 50 101 0.85 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 PIF1 PF05970.9 364 4e-05 14.3 0.2 2 2 0.05 2.2 -1.2 0.0 107 138 125 156 121 193 0.76 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 UPF0079 PF02367.12 123 0.00023 12.5 0.1 1 1 1.1e-05 0.00046 11.6 0.1 11 40 59 88 52 95 0.85 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 NACHT PF05729.7 166 0.00026 12.4 0.8 1 2 1.4e-05 0.00059 11.2 0.2 3 28 66 91 64 97 0.86 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 NACHT PF05729.7 166 0.00026 12.4 0.8 2 2 0.086 3.7 -1.1 0.0 77 115 184 216 149 239 0.64 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_25 PF13481.1 194 2.3e-05 15.5 0.0 1 1 1.1e-06 4.7e-05 14.5 0.0 20 134 48 144 29 154 0.63 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 2_2 - 245 AAA_5 PF07728.9 139 0.00017 13.1 0.2 1 1 1.1e-05 0.00047 11.6 0.1 2 22 66 86 65 98 0.84 # 1608 # 2342 # -1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=AAAA;rbs_spacer=4bp;gc_cont=0.343 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/21deae14-525e-4772-8a92-53219f3b9da8 # Target file: checkm_output/bins/pGCA_001314245.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001314245.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/21deae14-525e-4772-8a92-53219f3b9da8 checkm_output/bins/pGCA_001314245.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:01 2020 # [ok]