# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 300 MipZ PF09140.6 261 9.3e-07 20.2 0.3 1 2 7.7e-05 0.0043 8.2 0.1 2 44 4 47 3 108 0.76 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_29 - 300 MipZ PF09140.6 261 9.3e-07 20.2 0.3 2 2 2.4e-05 0.0013 9.9 0.0 86 113 147 174 133 189 0.80 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_29 - 300 YhjQ PF06564.7 244 2.3e-11 35.6 0.0 1 2 1e-06 5.8e-05 14.6 0.0 3 41 4 43 1 55 0.86 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_29 - 300 YhjQ PF06564.7 244 2.3e-11 35.6 0.0 2 2 4.1e-08 2.3e-06 19.2 0.0 65 156 105 198 72 223 0.71 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_38 - 148 SSB PF00436.20 104 7.3e-21 66.2 0.3 1 1 2.3e-22 1.3e-20 65.4 0.3 1 102 2 93 2 95 0.94 # 24318 # 24761 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 1_44 - 666 AAA_22 PF13401.1 131 3.4e-05 16.1 0.0 1 2 2.7e-05 0.0015 10.8 0.0 7 33 261 287 255 382 0.68 # 30976 # 32973 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_44 - 666 AAA_22 PF13401.1 131 3.4e-05 16.1 0.0 2 2 0.014 0.76 2.0 0.0 90 101 530 543 500 567 0.79 # 30976 # 32973 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_29 - 300 ArsA_ATPase PF02374.10 305 1.1e-11 36.4 2.7 1 1 3.7e-12 2.1e-10 32.2 2.7 9 137 11 170 8 172 0.68 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_29 - 300 Methyltransf_24 PF13578.1 106 0.00045 13.2 0.0 1 1 0.00012 0.0067 9.4 0.0 4 81 13 171 11 177 0.61 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_29 - 300 Fer4_NifH PF00142.13 273 1.1e-09 29.9 0.4 1 2 1.3e-10 7.4e-09 27.2 0.1 8 69 11 75 5 84 0.86 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_29 - 300 Fer4_NifH PF00142.13 273 1.1e-09 29.9 0.4 2 2 0.02 1.1 0.4 0.0 146 248 186 292 153 296 0.64 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_29 - 300 CbiA PF01656.18 195 9.1e-30 95.6 0.3 1 1 2.6e-31 1.4e-29 94.9 0.3 1 192 5 259 5 262 0.79 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_39 - 924 TraG-D_C PF12696.2 128 1.3e-33 107.7 0.0 1 1 8.3e-35 4.6e-33 105.9 0.0 1 127 615 732 615 733 0.89 # 24776 # 27547 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_29 - 300 AAA_31 PF13614.1 157 5.4e-11 34.7 1.5 1 1 2.3e-11 1.3e-09 30.2 1.5 8 150 10 191 3 197 0.79 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_44 - 666 AAA_10 PF12846.2 304 1.2e-58 191.0 1.4 1 1 7.8e-60 2.2e-58 190.1 1.4 4 300 261 618 258 622 0.90 # 30976 # 32973 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_39 - 924 AAA_10 PF12846.2 304 3.3e-07 22.0 1.2 1 2 4.6e-08 1.3e-06 20.1 0.1 3 176 223 454 221 469 0.68 # 24776 # 27547 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_39 - 924 AAA_10 PF12846.2 304 3.3e-07 22.0 1.2 2 2 0.075 2.1 -0.3 0.1 60 67 643 650 572 866 0.65 # 24776 # 27547 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_44 - 666 Zot PF05707.7 193 0.00018 13.1 0.3 1 2 0.076 4.2 -1.2 0.1 5 26 263 284 261 292 0.68 # 30976 # 32973 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_44 - 666 Zot PF05707.7 193 0.00018 13.1 0.3 2 2 1.5e-05 0.00083 10.9 0.0 83 131 531 580 472 616 0.81 # 30976 # 32973 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_44 - 666 DUF853 PF05872.7 504 5.1e-06 17.1 0.1 1 2 0.018 1 -0.4 0.0 22 42 259 279 249 303 0.80 # 30976 # 32973 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_44 - 666 DUF853 PF05872.7 504 5.1e-06 17.1 0.1 2 2 5.1e-07 2.9e-05 14.6 0.0 261 362 531 640 523 646 0.87 # 30976 # 32973 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_39 - 924 TrwB_AAD_bind PF10412.4 386 3.9e-22 70.4 0.0 1 2 2.5e-05 0.0007 10.3 0.0 16 135 222 360 215 384 0.79 # 24776 # 27547 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_39 - 924 TrwB_AAD_bind PF10412.4 386 3.9e-22 70.4 0.0 2 2 1.1e-19 3.1e-18 57.6 0.0 234 373 605 739 553 746 0.82 # 24776 # 27547 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_44 - 666 TrwB_AAD_bind PF10412.4 386 7e-07 20.2 0.1 1 1 8.9e-08 2.5e-06 18.4 0.1 19 72 262 323 250 328 0.84 # 30976 # 32973 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_29 - 300 ParA PF10609.4 81 4.4e-05 15.5 0.1 1 1 2e-06 0.00011 14.2 0.0 2 49 161 206 160 227 0.85 # 18415 # 19314 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.251 1_39 - 924 T4SS-DNA_transf PF02534.9 469 2.4e-40 130.5 5.7 1 2 1.1e-24 6.2e-23 73.1 0.6 32 258 209 458 165 464 0.77 # 24776 # 27547 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_39 - 924 T4SS-DNA_transf PF02534.9 469 2.4e-40 130.5 5.7 2 2 1.5e-20 8.1e-19 59.5 0.5 250 434 557 741 551 770 0.82 # 24776 # 27547 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_38 - 148 tRNA_anti-codon PF01336.20 75 1.8e-05 16.7 0.1 1 1 1.3e-06 7.3e-05 14.7 0.1 25 63 38 76 21 114 0.85 # 24318 # 24761 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.306 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e0849810-3ed0-40da-b2bf-4d686c6e8566 # Target file: checkm_output/bins/pGCA_001307235.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001307235.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e0849810-3ed0-40da-b2bf-4d686c6e8566 checkm_output/bins/pGCA_001307235.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:44:01 2020 # [ok]