# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_1 - 245 Methyltransf_12 PF08242.7 99 0.00024 13.0 0.2 1 1 1.9e-05 0.00066 11.6 0.0 2 56 36 88 35 114 0.83 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_24 - 193 RuvB_C PF05491.8 76 0.00024 12.2 0.4 1 2 0.038 1.3 0.2 0.1 55 67 121 133 117 139 0.82 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 1_24 - 193 RuvB_C PF05491.8 76 0.00024 12.2 0.4 2 2 8.6e-05 0.0029 8.7 0.0 6 43 145 178 142 182 0.86 # 20055 # 20633 # -1 # ID=1_24;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.330 3_1 - 245 RrnaAD PF00398.15 262 1.4e-75 245.0 4.4 1 1 4.6e-77 1.6e-75 244.9 4.4 1 262 1 244 1 244 0.97 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_18 PF12847.2 112 7.4e-08 24.4 0.0 1 1 3e-09 1e-07 23.9 0.0 3 66 32 91 30 151 0.76 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_11 PF08241.7 95 1.9e-06 19.7 0.0 1 1 1.1e-07 3.7e-06 18.8 0.0 2 60 36 94 35 99 0.91 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 1_20 - 225 AAA_17 PF13207.1 121 1.3e-06 20.7 1.1 1 1 2.5e-07 2.1e-06 20.0 1.1 23 113 24 122 21 206 0.85 # 15761 # 16435 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 4_1 - 121 AAA_17 PF13207.1 121 1.4e-06 20.6 1.2 1 1 2e-07 1.7e-06 20.3 1.2 23 110 24 119 17 121 0.85 # 2 # 364 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 4_3 - 121 AAA_17 PF13207.1 121 1.4e-06 20.6 1.2 1 1 2e-07 1.7e-06 20.3 1.2 23 110 24 119 17 121 0.85 # 1557 # 1919 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.333 1_7 - 225 AAA_17 PF13207.1 121 4.3e-06 19.0 0.8 1 1 7.1e-07 6e-06 18.5 0.8 23 113 24 122 19 204 0.85 # 4293 # 4967 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 3_1 - 245 Methyltransf_25 PF13649.1 101 0.00023 12.9 0.0 1 1 1.5e-05 0.0005 11.9 0.0 1 69 34 96 34 121 0.83 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 PCMT PF01135.14 210 1.2e-06 19.5 0.0 1 1 1e-07 3.5e-06 18.0 0.0 53 126 10 80 3 86 0.86 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_26 PF13659.1 117 5.2e-09 27.6 0.0 1 1 2e-10 6.8e-09 27.2 0.0 2 81 32 105 31 148 0.90 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 MTS PF05175.9 170 1.1e-05 16.3 0.0 1 1 4.8e-07 1.6e-05 15.7 0.0 25 113 24 109 14 125 0.83 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 NodS PF05401.6 201 1e-05 16.4 0.0 1 1 4.8e-07 1.6e-05 15.7 0.0 44 107 31 94 9 115 0.84 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_31 PF13847.1 152 5.9e-06 17.3 2.8 1 1 2.9e-07 1e-05 16.6 2.6 2 76 29 98 28 225 0.74 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 DOT1 PF08123.8 205 1.1e-05 16.2 1.3 1 2 1.9e-06 6.3e-05 13.7 0.0 29 91 17 77 13 116 0.83 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 DOT1 PF08123.8 205 1.1e-05 16.2 1.3 2 2 0.016 0.53 0.9 0.6 78 133 180 229 169 236 0.57 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 TIGR00755 TIGR00755 256 7.9e-48 154.0 1.2 1 1 2.9e-49 1e-47 153.6 1.2 6 254 7 237 3 239 0.88 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_23 PF13489.1 161 1.7e-05 15.9 0.0 1 1 1.5e-06 4.9e-05 14.5 0.0 11 67 17 78 8 119 0.71 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_4 PF02390.12 197 5.9e-06 16.8 0.3 1 2 1.7e-07 5.9e-06 16.8 0.3 20 97 31 101 4 104 0.77 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 3_1 - 245 Methyltransf_4 PF02390.12 197 5.9e-06 16.8 0.3 2 2 0.093 3.2 -1.9 0.1 136 159 187 207 168 229 0.62 # 52 # 786 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.256 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bcfd39d1-6d7d-4b20-b22e-19a965365206 # Target file: checkm_output/bins/pGCA_001296985.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001296985.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bcfd39d1-6d7d-4b20-b22e-19a965365206 checkm_output/bins/pGCA_001296985.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:57 2020 # [ok]