# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 344 Mg_chelatase PF01078.16 207 1.5e-07 23.2 0.0 1 1 3.9e-09 2.7e-07 22.3 0.0 1 49 150 198 150 248 0.87 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_22 - 248 Methyltransf_28 PF02636.12 252 0.00019 13.3 0.0 1 1 3.5e-06 0.00025 12.9 0.0 32 117 85 191 61 221 0.71 # 18936 # 19679 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.491 1_14 - 344 IstB_IS21 PF01695.12 178 0.00033 12.5 0.2 1 1 1.7e-05 0.0012 10.6 0.1 44 62 168 186 163 192 0.88 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_39 - 217 MipZ PF09140.6 261 1.8e-19 62.2 0.7 1 1 5.1e-19 1.8e-17 55.6 0.7 2 147 4 129 3 140 0.85 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_27 - 217 MipZ PF09140.6 261 3.6e-12 38.3 0.0 1 2 5.6e-09 2e-07 22.7 0.0 2 53 2 52 1 65 0.85 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_27 - 217 MipZ PF09140.6 261 3.6e-12 38.3 0.0 2 2 3.5e-06 0.00012 13.6 0.0 87 143 67 123 61 135 0.90 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_27 - 217 YhjQ PF06564.7 244 1.1e-06 20.6 0.9 1 2 1.9e-06 0.00013 13.7 0.3 3 41 2 40 1 43 0.94 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_27 - 217 YhjQ PF06564.7 244 1.1e-06 20.6 0.9 2 2 0.0011 0.079 4.7 0.0 98 145 61 106 50 115 0.89 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_47 - 290 3HCDH_N PF02737.13 180 6e-06 18.4 0.6 1 3 5.7e-06 0.00041 12.5 0.0 1 33 2 34 2 50 0.88 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_47 - 290 3HCDH_N PF02737.13 180 6e-06 18.4 0.6 2 3 0.018 1.3 1.1 0.1 67 91 46 71 36 94 0.80 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_47 - 290 3HCDH_N PF02737.13 180 6e-06 18.4 0.6 3 3 0.013 0.89 1.6 0.0 4 56 131 187 128 213 0.68 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_21 - 202 SSB PF00436.20 104 2.2e-38 122.8 0.2 1 1 3.8e-40 2.7e-38 122.5 0.2 1 100 5 107 5 111 0.96 # 18024 # 18629 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.596 1_55 - 882 AAA_22 PF13401.1 131 8.4e-06 18.4 0.7 1 2 2.2e-05 0.00053 12.6 0.0 3 24 106 127 103 133 0.90 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_55 - 882 AAA_22 PF13401.1 131 8.4e-06 18.4 0.7 2 2 0.035 0.84 2.2 0.2 27 81 482 551 473 571 0.75 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_14 - 344 AAA_22 PF13401.1 131 0.00021 13.9 0.0 1 1 1.6e-05 0.00039 13.0 0.0 4 32 171 199 166 243 0.77 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_27 - 217 AAA_22 PF13401.1 131 0.00059 12.4 0.0 1 1 6.9e-05 0.0016 11.0 0.0 14 69 11 69 1 101 0.74 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_14 - 344 ATP_bind_1 PF03029.12 238 0.00016 13.6 0.0 1 1 4e-06 0.00028 12.9 0.0 1 27 176 201 176 206 0.85 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_39 - 217 SRP54 PF00448.17 196 1.6e-10 33.1 0.2 1 1 3.2e-12 2.3e-10 32.6 0.2 4 98 4 95 2 127 0.82 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_55 - 882 AAA_15 PF13175.1 415 4.1e-05 15.1 0.0 1 1 8.1e-07 5.8e-05 14.6 0.0 1 56 86 160 86 191 0.83 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_14 - 344 AAA_17 PF13207.1 121 2.1e-05 17.8 0.0 1 1 2.7e-06 6.4e-05 16.2 0.0 2 22 174 194 173 235 0.82 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_55 - 882 AAA_17 PF13207.1 121 2.2e-05 17.7 0.0 1 1 1.8e-05 0.00042 13.6 0.0 3 24 111 133 109 210 0.75 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_39 - 217 AAA_17 PF13207.1 121 3.3e-05 17.1 0.0 1 1 2.6e-06 6.2e-05 16.3 0.0 2 77 5 90 4 162 0.71 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_55 - 882 AAA_21 PF13304.1 303 2.9e-15 49.3 0.0 1 2 1.6e-09 1.1e-07 24.4 0.0 1 23 109 131 109 160 0.82 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_55 - 882 AAA_21 PF13304.1 303 2.9e-15 49.3 0.0 2 2 5.2e-09 3.7e-07 22.7 0.0 168 302 595 707 521 708 0.69 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_39 - 217 ArsA_ATPase PF02374.10 305 9.2e-09 27.1 1.2 1 2 7.5e-10 2.7e-08 25.6 0.2 3 64 4 70 2 73 0.81 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_39 - 217 ArsA_ATPase PF02374.10 305 9.2e-09 27.1 1.2 2 2 0.038 1.3 0.3 0.1 124 135 78 89 65 91 0.80 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_27 - 217 ArsA_ATPase PF02374.10 305 2.3e-06 19.2 0.0 1 1 9.9e-08 3.5e-06 18.6 0.0 4 45 3 45 1 59 0.88 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_14 - 344 T2SE PF00437.15 272 1.5e-42 137.7 0.0 1 1 2.6e-44 1.9e-42 137.4 0.0 6 268 23 316 19 320 0.96 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_47 - 290 AdoHcyase_NAD PF00670.16 162 0.00045 12.5 0.1 1 1 1e-05 0.00074 11.8 0.1 28 113 5 95 2 119 0.82 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_47 - 290 Shikimate_DH PF01488.15 135 0.00023 13.7 1.4 1 1 5e-06 0.00035 13.1 0.0 14 109 2 92 1 116 0.78 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_14 - 344 Zeta_toxin PF06414.7 201 0.00013 13.6 0.0 1 1 2.7e-06 0.00019 13.0 0.0 15 64 170 222 161 245 0.81 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_47 - 290 NAD_binding_8 PF13450.1 68 0.00012 14.5 0.0 1 1 4.2e-06 0.0003 13.3 0.0 1 31 5 35 5 40 0.93 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_47 - 290 F420_oxidored PF03807.12 96 1.1e-13 43.9 0.0 1 1 4.6e-15 3.2e-13 42.4 0.0 1 94 2 92 2 94 0.94 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_55 - 882 SMC_N PF02463.14 220 2.8e-18 58.3 0.0 1 1 6.3e-19 4.5e-17 54.4 0.0 2 207 86 712 85 718 0.93 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_39 - 217 VirC1 PF07015.6 231 4.3e-12 38.0 0.0 1 1 2e-13 7.1e-12 37.3 0.0 5 199 6 200 2 212 0.73 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_27 - 217 VirC1 PF07015.6 231 0.00034 12.1 0.0 1 1 1.1e-05 0.0004 11.9 0.0 9 152 8 146 1 193 0.80 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_39 - 217 Fer4_NifH PF00142.13 273 1.6e-05 16.6 0.7 1 1 8.5e-07 3e-05 15.7 0.3 8 40 11 43 3 56 0.85 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_27 - 217 Fer4_NifH PF00142.13 273 4.8e-05 15.0 0.0 1 1 1.8e-06 6.4e-05 14.6 0.0 8 42 9 43 2 91 0.89 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_55 - 882 Arch_ATPase PF01637.13 234 0.0014 10.7 0.9 1 2 0.00012 0.0084 8.2 0.0 20 37 107 124 104 130 0.88 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_55 - 882 Arch_ATPase PF01637.13 234 0.0014 10.7 0.9 2 2 0.092 6.5 -1.3 0.1 119 131 660 674 650 689 0.74 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_55 - 882 AAA_16 PF13191.1 185 0.00011 14.6 0.1 1 2 1.6e-06 0.00011 14.6 0.1 25 67 108 156 97 438 0.86 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_55 - 882 AAA_16 PF13191.1 185 0.00011 14.6 0.1 2 2 0.062 4.4 -0.4 2.3 78 141 479 527 438 686 0.65 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_55 - 882 AAA_23 PF13476.1 202 3.4e-14 46.0 0.0 1 1 1.9e-15 1.4e-13 44.1 0.0 3 165 90 308 88 344 0.60 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_14 - 344 AAA_18 PF13238.1 129 3.7e-05 16.5 0.0 1 1 2.1e-06 7.4e-05 15.5 0.0 1 22 174 195 174 224 0.73 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_55 - 882 AAA_18 PF13238.1 129 0.00061 12.5 0.0 1 1 4.9e-05 0.0018 11.1 0.0 3 23 112 142 111 179 0.73 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_55 - 882 AAA_13 PF13166.1 712 2.3e-10 31.9 1.5 1 2 1e-08 3.6e-07 21.3 0.0 12 40 103 131 91 154 0.83 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_55 - 882 AAA_13 PF13166.1 712 2.3e-10 31.9 1.5 2 2 0.00012 0.0043 7.9 0.0 527 582 661 715 636 745 0.86 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_58 - 679 AAA_13 PF13166.1 712 0.0026 8.6 8.8 1 2 0.002 0.072 3.8 1.0 409 459 400 450 364 473 0.57 # 49232 # 51268 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_58 - 679 AAA_13 PF13166.1 712 0.0026 8.6 8.8 2 2 0.00038 0.014 6.2 7.9 293 473 428 612 415 633 0.71 # 49232 # 51268 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_47 - 290 GFO_IDH_MocA PF01408.17 120 5.7e-08 25.8 0.2 1 1 1.7e-09 1.2e-07 24.7 0.2 1 84 1 80 1 116 0.79 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_39 - 217 CbiA PF01656.18 195 7.2e-22 70.1 0.0 1 1 4.1e-23 9.6e-22 69.7 0.0 1 145 5 131 5 162 0.85 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_27 - 217 CbiA PF01656.18 195 1.5e-16 52.8 0.0 1 1 1.1e-17 2.7e-16 51.9 0.0 5 142 7 126 3 168 0.79 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_22 - 248 CbiA PF01656.18 195 1.1e-08 27.1 1.3 1 2 1.8e-05 0.00042 12.2 0.3 1 20 11 30 11 31 0.93 # 18936 # 19679 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.491 1_22 - 248 CbiA PF01656.18 195 1.1e-08 27.1 1.3 2 2 5.2e-06 0.00012 13.9 0.0 77 167 51 152 38 173 0.79 # 18936 # 19679 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.491 1_47 - 290 Rossmann-like PF10727.4 127 0.00012 14.2 1.8 1 1 2.2e-06 0.00015 13.9 0.3 12 79 2 69 1 112 0.71 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_55 - 882 AAA_29 PF13555.1 62 2.7e-07 22.5 0.0 1 1 1.8e-08 6.4e-07 21.3 0.0 16 50 102 134 86 139 0.82 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_14 - 344 AAA_29 PF13555.1 62 0.00046 12.2 0.0 1 1 3.8e-05 0.0013 10.7 0.0 9 38 160 186 157 194 0.77 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_55 - 882 AAA PF00004.24 132 0.00023 13.8 2.3 1 1 1.2e-05 0.00041 13.0 0.0 2 18 111 127 110 156 0.86 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_14 - 344 AAA PF00004.24 132 0.00056 12.6 0.0 1 1 2.9e-05 0.001 11.7 0.0 1 35 174 208 174 253 0.80 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_17 - 551 TraG-D_C PF12696.2 128 9.7e-29 92.3 0.0 1 1 2.2e-30 1.6e-28 91.6 0.0 2 127 309 431 308 432 0.88 # 12918 # 14570 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_47 - 290 NAD_binding_2 PF03446.10 163 1.1e-17 56.7 0.9 1 2 5e-19 3.6e-17 55.1 0.4 2 129 1 127 1 150 0.88 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_47 - 290 NAD_binding_2 PF03446.10 163 1.1e-17 56.7 0.9 2 2 0.081 5.7 -0.8 0.0 104 121 227 246 219 247 0.66 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_39 - 217 AAA_31 PF13614.1 157 1.7e-10 33.5 0.1 1 2 3.5e-09 1.2e-07 24.2 0.0 2 44 4 46 3 69 0.88 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_39 - 217 AAA_31 PF13614.1 157 1.7e-10 33.5 0.1 2 2 0.00051 0.018 7.4 0.0 110 133 73 96 58 111 0.79 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_27 - 217 AAA_31 PF13614.1 157 1.9e-09 30.0 0.0 1 2 4e-08 1.4e-06 20.7 0.0 8 42 8 42 2 53 0.90 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_27 - 217 AAA_31 PF13614.1 157 1.9e-09 30.0 0.0 2 2 0.00061 0.022 7.1 0.0 107 150 68 110 64 116 0.84 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_27 - 217 AAA_33 PF13671.1 143 0.00016 14.0 0.1 1 1 4.2e-06 0.0003 13.1 0.1 9 98 11 107 2 160 0.76 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_39 - 217 KTI12 PF08433.5 270 0.00052 11.7 0.0 1 1 1.2e-05 0.00085 11.0 0.0 10 53 12 55 1 91 0.65 # 34620 # 35270 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_47 - 290 2-Hacid_dh_C PF02826.14 178 6.5e-09 27.6 0.0 1 1 1.5e-10 1.1e-08 26.8 0.0 38 126 2 91 1 115 0.88 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_14 - 344 FtsK_SpoIIIE PF01580.13 205 1.2e-06 20.5 0.0 1 1 2.9e-08 2e-06 19.8 0.0 24 59 159 192 139 194 0.78 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_11 - 263 AAA_27 PF13514.1 1111 3.8e-05 13.9 0.7 1 1 6.4e-07 4.5e-05 13.6 0.7 418 520 3 109 1 130 0.87 # 8210 # 8998 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_55 - 882 ABC_tran PF00005.22 137 0.00034 13.4 0.3 1 1 6.1e-05 0.0022 10.8 0.0 12 31 108 127 104 142 0.88 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_14 - 344 ABC_tran PF00005.22 137 0.00067 12.4 0.0 1 1 3.5e-05 0.0013 11.5 0.0 7 65 167 223 163 343 0.79 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_47 - 290 UDPG_MGDP_dh_N PF03721.9 185 4.2e-06 18.7 0.1 1 1 2.3e-07 1.6e-05 16.7 0.0 1 33 1 33 1 43 0.94 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_14 - 344 AAA_19 PF13245.1 76 0.00033 12.9 0.0 1 1 1.2e-05 0.00085 11.5 0.0 9 25 171 186 165 195 0.74 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_7 - 811 AAA_10 PF12846.2 304 1.3e-20 66.4 0.0 1 1 9.1e-22 2.2e-20 65.7 0.0 2 297 386 673 385 677 0.85 # 3358 # 5790 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_27 - 217 AAA_10 PF12846.2 304 7.8e-06 17.9 0.0 1 1 9e-07 2.1e-05 16.4 0.0 11 50 11 52 9 95 0.87 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_14 - 344 AAA_10 PF12846.2 304 0.00017 13.4 0.0 1 1 1.4e-05 0.00033 12.5 0.0 2 34 172 204 171 227 0.85 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_47 - 290 DAO PF01266.19 358 8.3e-05 14.0 0.0 1 1 3.1e-06 0.00022 12.6 0.0 2 31 3 32 2 42 0.89 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_14 - 344 Viral_helicase1 PF01443.13 234 0.00068 11.6 0.0 1 1 1.8e-05 0.0013 10.7 0.0 1 30 174 200 174 221 0.78 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_47 - 290 Pyr_redox PF00070.22 80 0.00031 13.6 0.0 1 1 1.5e-05 0.001 11.9 0.0 1 42 2 44 2 54 0.88 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_17 - 551 TrwB_AAD_bind PF10412.4 386 6.1e-25 80.0 0.0 1 2 0.00042 0.03 5.3 0.0 20 127 46 160 37 169 0.68 # 12918 # 14570 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_17 - 551 TrwB_AAD_bind PF10412.4 386 6.1e-25 80.0 0.0 2 2 1.9e-24 1.3e-22 72.3 0.0 247 377 311 442 305 452 0.88 # 12918 # 14570 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_17 - 551 T4SS-DNA_transf PF02534.9 469 5.3e-75 245.1 0.0 1 2 9.9e-76 7e-74 241.4 0.0 31 457 23 468 5 471 0.82 # 12918 # 14570 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_17 - 551 T4SS-DNA_transf PF02534.9 469 5.3e-75 245.1 0.0 2 2 0.0075 0.53 1.1 0.0 85 124 485 525 480 535 0.82 # 12918 # 14570 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_14 - 344 Pox_A32 PF04665.7 241 0.00023 12.9 0.0 1 1 4.7e-06 0.00034 12.4 0.0 13 67 171 222 161 239 0.73 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_55 - 882 RNA_helicase PF00910.17 107 0.0002 14.0 0.0 1 1 1.1e-05 0.00078 12.1 0.0 2 44 111 153 110 161 0.84 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_47 - 290 IlvN PF07991.7 165 0.00013 13.8 0.0 1 1 3.2e-06 0.00023 13.0 0.0 6 78 2 76 1 92 0.83 # 40854 # 41723 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.634 1_55 - 882 AAA_24 PF13479.1 213 3.2e-05 16.0 0.0 1 1 2e-06 7.1e-05 14.9 0.0 6 34 110 138 107 175 0.87 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_14 - 344 AAA_24 PF13479.1 213 0.00023 13.2 0.0 1 1 1.3e-05 0.00047 12.2 0.0 3 23 171 191 169 197 0.87 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_2 - 178 TIGR00922 TIGR00922 172 0.00044 12.2 0.0 1 1 7.9e-06 0.00056 11.9 0.0 33 90 27 86 9 104 0.79 # 969 # 1502 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.528 1_27 - 217 AAA_25 PF13481.1 194 0.00046 12.0 1.0 1 1 4.2e-05 0.0029 9.4 0.9 42 95 10 53 2 202 0.62 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_14 - 344 AAA_28 PF13521.1 163 8.9e-05 14.9 0.0 1 1 1.3e-05 0.00047 12.6 0.0 1 20 173 192 173 211 0.77 # 11164 # 12195 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_55 - 882 AAA_28 PF13521.1 163 0.00031 13.2 0.5 1 2 0.00043 0.015 7.6 0.0 4 20 112 128 110 155 0.81 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_55 - 882 AAA_28 PF13521.1 163 0.00031 13.2 0.5 2 2 0.015 0.53 2.6 0.1 30 82 454 506 452 512 0.81 # 45936 # 48581 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_27 - 217 APS_kinase PF01583.15 157 0.00038 12.6 0.2 1 2 1.8e-05 0.0013 10.8 0.1 5 39 3 38 1 42 0.85 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_27 - 217 APS_kinase PF01583.15 157 0.00038 12.6 0.2 2 2 0.092 6.5 -1.2 0.0 73 98 96 121 90 138 0.76 # 25627 # 26277 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/345b1f0f-8315-4aa1-9b6c-d59cd61bc7da # Target file: checkm_output/bins/pGCA_001281365.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001281365.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/345b1f0f-8315-4aa1-9b6c-d59cd61bc7da checkm_output/bins/pGCA_001281365.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:57 2020 # [ok]