# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_6 - 260 cobW PF02492.14 178 5.4e-05 15.8 1.8 1 1 2.5e-06 0.0003 13.4 1.8 4 93 32 107 29 130 0.86 # 2516 # 3295 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 3_18 - 193 RuvB_C PF05491.8 76 0.00077 12.3 0.4 1 2 0.038 4.6 0.2 0.1 55 67 121 133 117 139 0.82 # 11084 # 11662 # -1 # ID=3_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 3_18 - 193 RuvB_C PF05491.8 76 0.00077 12.3 0.4 2 2 8.6e-05 0.01 8.7 0.0 6 43 145 178 142 182 0.86 # 11084 # 11662 # -1 # ID=3_18;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 3_12 - 209 FeoB_N PF02421.13 156 6.5e-05 15.4 3.7 1 2 4.3e-05 0.0052 9.2 0.0 3 24 30 51 28 57 0.89 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_12 - 209 FeoB_N PF02421.13 156 6.5e-05 15.4 3.7 2 2 0.00037 0.045 6.2 1.3 85 131 161 207 129 208 0.78 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_1 - 140 IstB_IS21 PF01695.12 178 1.9e-06 20.5 0.0 1 1 2e-08 2.3e-06 20.3 0.0 18 69 86 138 63 140 0.71 # 3 # 422 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.321 4_1 - 289 MipZ PF09140.6 261 5.7e-06 18.7 0.1 1 2 1.3e-05 0.0016 10.7 0.0 7 62 34 88 27 112 0.77 # 564 # 1430 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 4_1 - 289 MipZ PF09140.6 261 5.7e-06 18.7 0.1 2 2 0.00029 0.034 6.3 0.0 84 129 133 178 105 239 0.90 # 564 # 1430 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 4_1 - 289 YhjQ PF06564.7 244 4.6e-09 29.1 0.0 1 1 5.8e-11 6.9e-09 28.5 0.0 3 154 29 184 27 189 0.86 # 564 # 1430 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 1_20 - 148 SSB PF00436.20 104 1.6e-20 66.2 0.3 1 1 2.3e-22 2.7e-20 65.4 0.3 1 102 2 93 2 95 0.94 # 21159 # 21602 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=14bp;gc_cont=0.311 3_12 - 209 AAA_22 PF13401.1 131 6.8e-06 19.4 1.0 1 1 5.2e-07 2.1e-05 17.9 1.0 4 122 27 188 24 197 0.70 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_14 - 666 AAA_22 PF13401.1 131 7e-05 16.2 0.0 1 2 7.7e-05 0.0031 10.8 0.0 7 33 261 287 255 382 0.68 # 12945 # 14942 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.343 1_14 - 666 AAA_22 PF13401.1 131 7e-05 16.2 0.0 2 2 0.041 1.6 2.0 0.0 90 101 530 543 503 567 0.78 # 12945 # 14942 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.343 2_6 - 260 AAA_22 PF13401.1 131 0.00043 13.6 1.7 1 1 0.00015 0.0061 9.9 1.7 8 100 32 111 27 166 0.59 # 2516 # 3295 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 2_6 - 260 KAP_NTPase PF07693.9 325 2.5e-05 16.5 0.5 1 1 2.7e-07 3.3e-05 16.1 0.5 13 82 21 94 15 251 0.71 # 2516 # 3295 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 3_12 - 209 AAA_15 PF13175.1 415 1.4e-08 27.3 10.0 1 2 2.8e-06 0.00034 12.9 6.6 7 91 11 87 4 110 0.62 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_12 - 209 AAA_15 PF13175.1 415 1.4e-08 27.3 10.0 2 2 5.3e-07 6.4e-05 15.2 3.5 285 411 82 190 61 194 0.67 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_35 - 323 NAD_binding_7 PF13241.1 103 0.0006 13.3 0.0 1 1 1.3e-05 0.0016 11.9 0.0 5 63 144 197 143 244 0.72 # 32766 # 33734 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 3_12 - 209 AAA_17 PF13207.1 121 3.1e-05 18.0 0.3 1 1 2.5e-06 9.9e-05 16.4 0.3 3 58 31 88 30 207 0.73 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 4_1 - 289 AAA_17 PF13207.1 121 0.0002 15.3 0.2 1 1 2.5e-05 0.00099 13.1 0.2 9 62 38 94 37 268 0.76 # 564 # 1430 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 10_1 - 231 AAA_17 PF13207.1 121 0.00028 14.9 0.7 1 1 1.2e-05 0.00047 14.2 0.7 23 112 30 127 26 178 0.80 # 1 # 693 # 1 # ID=10_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.332 3_12 - 209 AAA_21 PF13304.1 303 4.8e-16 52.7 5.3 1 1 3.3e-16 4e-14 46.4 5.3 3 301 31 193 29 195 0.94 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_6 - 260 Miro PF08477.8 119 0.00016 15.3 0.6 1 2 0.00013 0.016 8.9 0.1 1 18 30 47 30 66 0.87 # 2516 # 3295 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 2_6 - 260 Miro PF08477.8 119 0.00016 15.3 0.6 2 2 0.0038 0.46 4.2 0.1 80 116 69 106 66 109 0.78 # 2516 # 3295 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 4_1 - 289 ArsA_ATPase PF02374.10 305 6.8e-10 31.5 0.2 1 2 2.3e-11 2.8e-09 29.5 0.0 9 141 36 162 30 164 0.82 # 564 # 1430 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 4_1 - 289 ArsA_ATPase PF02374.10 305 6.8e-10 31.5 0.2 2 2 0.079 9.5 -1.8 0.0 259 284 216 241 210 250 0.79 # 564 # 1430 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 2_1 - 140 AFG1_ATPase PF03969.11 362 0.00043 12.3 0.0 1 1 4.5e-06 0.00054 12.0 0.0 37 78 91 132 53 138 0.55 # 3 # 422 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.321 1_35 - 323 AdoHcyase_NAD PF00670.16 162 0.00012 15.2 1.6 1 1 1.2e-05 0.0015 11.6 1.6 21 111 144 231 137 247 0.76 # 32766 # 33734 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_35 - 323 Shikimate_DH PF01488.15 135 2.6e-05 17.5 0.6 1 1 3.5e-06 0.00042 13.6 0.6 8 100 142 222 136 237 0.73 # 32766 # 33734 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 3_12 - 209 Zeta_toxin PF06414.7 201 0.00014 14.2 0.0 1 1 1.7e-06 0.0002 13.7 0.0 14 62 25 74 14 97 0.82 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_35 - 323 F420_oxidored PF03807.12 96 0.00012 15.7 1.7 1 2 0.055 6.6 0.5 0.1 42 81 89 129 26 136 0.59 # 32766 # 33734 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_35 - 323 F420_oxidored PF03807.12 96 0.00012 15.7 1.7 2 2 7.5e-06 0.0009 12.9 0.2 1 36 148 179 148 229 0.85 # 32766 # 33734 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 3_12 - 209 SMC_N PF02463.14 220 1.8e-07 23.7 6.0 1 1 3.4e-09 4.1e-07 22.6 6.0 9 213 12 205 3 208 0.76 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_12 - 209 AAA_16 PF13191.1 185 0.00016 14.8 0.7 1 1 5.4e-06 0.00032 13.8 0.7 24 44 27 46 14 201 0.76 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_1 - 140 AAA_16 PF13191.1 185 0.0013 11.9 0.0 1 1 2.9e-05 0.0017 11.5 0.0 10 46 99 138 73 140 0.83 # 3 # 422 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.321 3_12 - 209 AAA_23 PF13476.1 202 0.00037 14.0 9.8 1 1 2.3e-05 0.0028 11.1 9.8 10 128 17 135 11 184 0.56 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_12 - 209 AAA_18 PF13238.1 129 0.0016 11.9 4.6 1 1 5.7e-05 0.0069 9.9 4.6 3 64 32 120 31 203 0.64 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 4_17 - 257 adh_short PF00106.20 167 2.8e-09 30.3 0.0 1 1 2.8e-11 3.3e-09 30.0 0.0 10 163 18 175 7 179 0.78 # 10466 # 11236 # -1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 3_12 - 209 AAA_13 PF13166.1 712 6.2e-07 21.3 5.0 1 2 0.00014 0.017 6.7 1.8 11 77 23 87 13 132 0.63 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_12 - 209 AAA_13 PF13166.1 712 6.2e-07 21.3 5.0 2 2 2.3e-07 2.8e-05 15.9 0.6 499 578 130 198 96 205 0.82 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 4_1 - 289 CbiA PF01656.18 195 1.6e-24 79.5 0.0 1 1 1.7e-26 2.1e-24 79.2 0.0 2 194 31 248 30 249 0.77 # 564 # 1430 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 3_12 - 209 KaiC PF06745.8 227 0.00021 13.6 0.4 1 1 3e-06 0.00036 12.8 0.2 15 141 23 148 15 162 0.79 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_12 - 209 AAA_29 PF13555.1 62 6.7e-07 22.0 0.0 1 1 1e-08 1.2e-06 21.2 0.0 16 40 21 44 13 48 0.83 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_6 - 260 Bac_DnaA PF00308.13 219 7.1e-07 22.2 0.3 1 1 1e-08 1.2e-06 21.5 0.3 24 111 18 112 11 149 0.79 # 2516 # 3295 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 4_17 - 257 KR PF08659.5 181 3.3e-06 20.0 0.0 1 1 4.1e-08 4.9e-06 19.5 0.0 12 90 20 95 8 112 0.82 # 10466 # 11236 # -1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 3_12 - 209 MMR_HSR1 PF01926.18 116 1.7e-05 17.9 2.8 1 1 3e-07 3.6e-05 16.9 2.8 3 91 31 134 29 203 0.64 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_12 - 209 DUF258 PF03193.11 161 1.5e-09 30.4 0.1 1 1 2.3e-11 2.7e-09 29.6 0.1 13 67 4 59 1 69 0.88 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_19 - 925 TraG-D_C PF12696.2 128 2.7e-33 107.7 0.0 1 1 8.3e-35 9.9e-33 105.9 0.0 1 127 615 732 615 733 0.89 # 18370 # 21144 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.340 1_35 - 323 NAD_binding_2 PF03446.10 163 8.5e-08 25.4 0.1 1 1 3.8e-09 4.6e-07 23.0 0.0 2 111 147 247 146 256 0.88 # 32766 # 33734 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 4_1 - 289 AAA_31 PF13614.1 157 4.1e-08 26.5 1.1 1 1 5.7e-10 6.8e-08 25.7 0.1 9 151 36 180 35 183 0.82 # 564 # 1430 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.255 3_12 - 209 NTPase_1 PF03266.10 168 0.00038 13.3 0.3 1 2 0.0012 0.14 5.0 0.0 3 19 31 47 29 57 0.86 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_12 - 209 NTPase_1 PF03266.10 168 0.00038 13.3 0.3 2 2 0.00037 0.045 6.6 0.2 80 135 134 191 104 207 0.74 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_35 - 323 2-Hacid_dh_C PF02826.14 178 4.3e-58 188.5 0.0 1 1 9.9e-60 5.9e-58 188.1 0.0 1 178 112 294 112 294 0.94 # 32766 # 33734 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 4_17 - 257 2-Hacid_dh_C PF02826.14 178 0.001 11.4 0.1 1 1 5.1e-05 0.0031 9.8 0.0 33 78 3 51 1 67 0.79 # 10466 # 11236 # -1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 2_1 - 140 AAA_30 PF13604.1 196 0.0012 11.6 0.2 1 1 1.5e-05 0.0018 11.0 0.1 9 41 107 139 93 140 0.84 # 3 # 422 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.321 2_1 - 140 Ribosomal_L9_N PF01281.14 48 0.00072 12.0 0.0 1 1 1.2e-05 0.0014 11.1 0.0 1 25 19 43 19 45 0.95 # 3 # 422 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.321 3_12 - 209 Dynamin_N PF00350.18 168 0.00031 13.7 2.6 1 1 7.1e-06 0.00086 12.3 2.6 2 35 31 64 31 196 0.64 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 3_12 - 209 ABC_tran PF00005.22 137 4.7e-36 117.3 0.1 1 1 5.4e-38 6.5e-36 116.8 0.1 1 136 17 159 17 160 0.93 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 2_1 - 140 AAA_19 PF13245.1 76 0.00022 14.2 0.0 1 1 2.8e-06 0.00033 13.6 0.0 11 33 118 138 108 140 0.72 # 3 # 422 # -1 # ID=2_1;partial=10;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.321 1_35 - 323 NAD_binding_10 PF13460.1 183 0.00015 14.9 0.0 1 1 3.1e-06 0.00037 13.7 0.0 2 47 150 189 149 220 0.86 # 32766 # 33734 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_14 - 666 AAA_10 PF12846.2 304 3.1e-58 190.7 1.5 1 1 9.5e-60 5.7e-58 189.8 1.5 4 300 261 618 258 622 0.90 # 12945 # 14942 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.343 3_12 - 209 AAA_10 PF12846.2 304 0.00018 14.1 0.2 1 1 5.2e-06 0.00031 13.3 0.1 3 22 29 48 27 78 0.84 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 4_17 - 257 adh_short_C2 PF13561.1 241 1.3e-78 257.2 0.0 1 1 1.3e-80 1.5e-78 257.0 0.0 1 241 13 253 13 253 0.98 # 10466 # 11236 # -1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 3_12 - 209 SbcCD_C PF13558.1 90 6.5e-05 16.0 0.0 1 1 7.3e-06 0.00087 12.4 0.0 24 88 123 174 102 176 0.79 # 6643 # 7269 # -1 # ID=3_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_14 - 666 Zot PF05707.7 193 0.00039 13.1 0.3 1 2 0.076 9.1 -1.2 0.1 5 26 263 284 261 292 0.68 # 12945 # 14942 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.343 1_14 - 666 Zot PF05707.7 193 0.00039 13.1 0.3 2 2 1.5e-05 0.0017 10.9 0.0 83 131 531 580 468 616 0.81 # 12945 # 14942 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.343 1_14 - 666 DUF853 PF05872.7 504 1.1e-05 17.1 0.1 1 2 0.017 2.1 -0.3 0.0 22 42 259 279 249 304 0.79 # 12945 # 14942 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.343 1_14 - 666 DUF853 PF05872.7 504 1.1e-05 17.1 0.1 2 2 5.1e-07 6.1e-05 14.6 0.0 261 362 531 640 523 646 0.87 # 12945 # 14942 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.343 1_19 - 925 TrwB_AAD_bind PF10412.4 386 8.2e-22 70.4 0.0 1 2 2.5e-05 0.0015 10.3 0.0 16 135 222 360 215 384 0.79 # 18370 # 21144 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.340 1_19 - 925 TrwB_AAD_bind PF10412.4 386 8.2e-22 70.4 0.0 2 2 1.1e-19 6.8e-18 57.5 0.0 234 373 605 739 554 746 0.82 # 18370 # 21144 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.340 1_14 - 666 TrwB_AAD_bind PF10412.4 386 1.5e-06 20.2 0.3 1 1 8e-08 4.8e-06 18.5 0.1 19 73 262 324 250 328 0.85 # 12945 # 14942 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.343 1_19 - 925 T4SS-DNA_transf PF02534.9 469 3.1e-38 124.6 11.8 1 2 1.2e-24 1.4e-22 73.0 0.6 32 258 209 458 163 464 0.77 # 18370 # 21144 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.340 1_19 - 925 T4SS-DNA_transf PF02534.9 469 3.1e-38 124.6 11.8 2 2 1.5e-20 1.7e-18 59.5 0.5 250 434 557 741 551 770 0.82 # 18370 # 21144 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.340 1_35 - 323 IlvN PF07991.7 165 0.00014 14.4 0.0 1 1 4e-06 0.00048 12.7 0.0 2 91 144 226 143 241 0.80 # 32766 # 33734 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.446 1_20 - 148 tRNA_anti-codon PF01336.20 75 3.9e-05 16.7 0.1 1 1 1.3e-06 0.00016 14.7 0.1 25 63 38 76 21 114 0.85 # 21159 # 21602 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=14bp;gc_cont=0.311 2_6 - 260 AAA_24 PF13479.1 213 1.2e-31 103.1 3.2 1 1 1.2e-33 1.4e-31 102.8 3.2 2 199 27 231 26 255 0.84 # 2516 # 3295 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 2_6 - 260 AAA_25 PF13481.1 194 0.0015 11.1 3.2 1 2 0.00056 0.067 5.7 0.5 37 52 32 47 26 74 0.77 # 2516 # 3295 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 2_6 - 260 AAA_25 PF13481.1 194 0.0015 11.1 3.2 2 2 0.00057 0.068 5.7 0.1 126 161 85 117 55 138 0.67 # 2516 # 3295 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.342 5_2 - 209 Ribosomal_L4 PF00573.17 192 0.0011 11.5 1.4 1 2 1.8e-05 0.0022 10.6 0.2 127 182 8 66 2 69 0.80 # 2450 # 3076 # -1 # ID=5_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 5_2 - 209 Ribosomal_L4 PF00573.17 192 0.0011 11.5 1.4 2 2 0.038 4.5 -0.3 0.1 62 76 132 148 96 199 0.70 # 2450 # 3076 # -1 # ID=5_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e69637b6-ccd9-4b3f-a61b-1822cb786ccf # Target file: checkm_output/bins/pGCA_001278745.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001278745.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e69637b6-ccd9-4b3f-a61b-1822cb786ccf checkm_output/bins/pGCA_001278745.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:55 2020 # [ok]