# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_98 - 814 IstB_IS21 PF01695.12 178 1.7e-05 17.3 0.1 1 1 3.2e-07 3.3e-05 16.3 0.1 50 93 103 146 98 173 0.85 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_92 - 711 NB-ARC PF00931.17 287 8.4e-19 60.4 0.0 1 1 3.3e-20 1.1e-18 60.0 0.0 8 258 407 651 400 680 0.82 # 83437 # 85569 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.682 1_98 - 814 NB-ARC PF00931.17 287 1.1e-06 20.5 0.0 1 1 1.1e-07 3.9e-06 18.8 0.0 17 210 98 291 84 315 0.65 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_83 - 175 NB-ARC PF00931.17 287 0.00025 12.9 0.0 1 1 9.5e-06 0.00033 12.5 0.0 22 49 12 40 6 74 0.81 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_98 - 814 AAA_22 PF13401.1 131 3.2e-09 30.0 0.1 1 1 7.9e-10 2e-08 27.4 0.0 3 98 99 194 97 221 0.91 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_92 - 711 AAA_22 PF13401.1 131 4.6e-06 19.8 0.0 1 1 5.2e-07 1.3e-05 18.3 0.0 8 98 423 513 419 525 0.83 # 83437 # 85569 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.682 1_83 - 175 AAA_22 PF13401.1 131 5.8e-06 19.4 0.0 1 1 4.6e-07 1.2e-05 18.4 0.0 6 31 11 36 8 82 0.75 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_52 - 883 AAA_22 PF13401.1 131 0.00041 13.5 0.0 1 2 0.0035 0.09 5.9 0.0 3 63 239 295 236 315 0.79 # 47072 # 49720 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_52 - 883 AAA_22 PF13401.1 131 0.00041 13.5 0.0 2 2 0.011 0.28 4.3 0.0 75 121 374 421 340 425 0.71 # 47072 # 49720 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_83 - 175 ADK PF00406.17 151 0.00074 12.4 0.0 1 1 1e-05 0.001 11.9 0.0 1 37 14 47 14 62 0.83 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_90 - 274 ATP_bind_2 PF03668.10 284 2.5e-07 22.9 0.0 1 1 3.3e-09 3.4e-07 22.5 0.0 195 283 45 130 34 131 0.83 # 81390 # 82211 # 1 # ID=1_90;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.732 1_83 - 175 AAA_17 PF13207.1 121 1.9e-05 18.4 0.4 1 1 2.4e-07 2.4e-05 18.1 0.3 3 17 13 27 11 143 0.96 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_98 - 814 MobB PF03205.9 140 0.00036 13.2 0.0 1 1 5.9e-06 0.00061 12.5 0.0 3 33 103 133 101 142 0.91 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_52 - 883 Helicase_C PF00271.26 78 1.1e-05 18.2 0.0 1 1 2.1e-07 2.2e-05 17.3 0.0 13 76 557 628 553 631 0.77 # 47072 # 49720 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_98 - 814 ArsA_ATPase PF02374.10 305 0.0015 10.5 0.0 1 1 2.3e-05 0.0024 9.9 0.0 3 43 102 143 101 154 0.72 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_98 - 814 PhoH PF02562.11 205 0.00091 11.4 0.2 1 1 1.6e-05 0.0017 10.6 0.2 21 65 102 147 86 152 0.85 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_93 - 245 Fer4_NifH PF00142.13 273 0.00054 12.1 0.1 1 2 7.8e-05 0.0081 8.3 0.0 6 26 9 29 4 54 0.87 # 85782 # 86516 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_93 - 245 Fer4_NifH PF00142.13 273 0.00054 12.1 0.1 2 2 0.009 0.92 1.5 0.0 185 242 172 233 149 243 0.70 # 85782 # 86516 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_98 - 814 Arch_ATPase PF01637.13 234 8.5e-05 15.2 0.0 1 1 1.4e-06 0.00015 14.5 0.0 4 55 84 135 82 174 0.86 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_98 - 814 AAA_16 PF13191.1 185 2.8e-08 26.9 1.7 1 1 8e-10 2.8e-08 26.9 1.7 3 83 82 162 80 363 0.84 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_83 - 175 AAA_16 PF13191.1 185 2.8e-05 17.1 0.1 1 1 1.4e-06 4.7e-05 16.4 0.1 25 48 10 33 6 143 0.74 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_92 - 711 AAA_16 PF13191.1 185 0.091 5.7 13.1 1 1 2.3e-05 0.00079 12.4 0.5 2 124 397 519 396 525 0.62 # 83437 # 85569 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.682 1_83 - 175 AAA_18 PF13238.1 129 0.0005 13.4 0.0 1 1 6.9e-06 0.00071 12.9 0.0 3 16 14 27 13 81 0.84 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_93 - 245 CbiA PF01656.18 195 2e-13 43.1 0.2 1 1 1.2e-14 1.2e-12 40.5 0.2 2 171 6 182 5 204 0.79 # 85782 # 86516 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_83 - 175 KaiC PF06745.8 227 0.00016 13.8 0.0 1 1 4e-06 0.0002 13.4 0.0 16 90 6 82 5 104 0.81 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_98 - 814 KaiC PF06745.8 227 0.0011 11.0 0.0 1 1 4.2e-05 0.0022 10.1 0.0 20 79 101 163 93 180 0.75 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_83 - 175 AAA_14 PF13173.1 128 0.00026 13.9 0.0 1 1 3.4e-06 0.00035 13.4 0.0 5 46 12 54 8 84 0.60 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_93 - 245 TIGR03594 TIGR03594 432 0.00034 12.3 0.1 1 2 0.087 9 -2.3 0.0 11 16 14 19 5 29 0.67 # 85782 # 86516 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_93 - 245 TIGR03594 TIGR03594 432 0.00034 12.3 0.1 2 2 7.2e-06 0.00074 11.2 0.0 46 131 87 182 70 233 0.69 # 85782 # 86516 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_93 - 245 AAA_29 PF13555.1 62 8.1e-05 15.1 0.2 1 2 0.0085 0.44 3.2 0.0 32 39 12 19 3 33 0.83 # 85782 # 86516 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_93 - 245 AAA_29 PF13555.1 62 8.1e-05 15.1 0.2 2 2 0.00011 0.0055 9.3 0.0 35 50 115 130 113 135 0.89 # 85782 # 86516 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_83 - 175 AAA_29 PF13555.1 62 9.1e-05 14.9 0.0 1 1 4.1e-06 0.00021 13.8 0.0 22 39 8 25 4 27 0.86 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_83 - 175 AAA PF00004.24 132 2.4e-05 17.5 0.1 1 2 6.7e-06 0.0007 12.8 0.0 3 22 14 33 12 46 0.80 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_83 - 175 AAA PF00004.24 132 2.4e-05 17.5 0.1 2 2 0.0092 0.95 2.6 0.0 75 113 48 87 40 96 0.78 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_93 - 245 MMR_HSR1 PF01926.18 116 4.2e-05 16.5 0.0 1 1 1.8e-06 9e-05 15.4 0.0 10 116 14 168 11 168 0.61 # 85782 # 86516 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_83 - 175 MMR_HSR1 PF01926.18 116 0.00081 12.3 0.0 1 1 4.2e-05 0.0022 11.0 0.0 2 21 12 31 11 41 0.80 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_93 - 245 AAA_31 PF13614.1 157 0.00065 12.6 0.1 1 2 0.0012 0.13 5.2 0.0 1 26 3 28 3 53 0.89 # 85782 # 86516 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_93 - 245 AAA_31 PF13614.1 157 0.00065 12.6 0.1 2 2 0.0014 0.15 4.9 0.0 126 152 115 141 114 143 0.86 # 85782 # 86516 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_83 - 175 AAA_33 PF13671.1 143 1.7e-19 63.0 0.0 1 1 2.1e-21 2.2e-19 62.7 0.0 2 121 12 124 11 137 0.86 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_83 - 175 KTI12 PF08433.5 270 0.00011 14.4 0.0 1 1 1.5e-06 0.00015 13.9 0.0 3 82 11 84 10 125 0.77 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_98 - 814 AAA_30 PF13604.1 196 0.0002 13.9 2.6 1 2 6.5e-06 0.00067 12.2 0.5 15 73 97 154 89 191 0.76 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_98 - 814 AAA_30 PF13604.1 196 0.0002 13.9 2.6 2 2 0.02 2.1 0.8 0.1 108 149 248 284 235 333 0.69 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_83 - 175 ABC_tran PF00005.22 137 1.6e-05 18.2 0.0 1 1 2.6e-07 2.7e-05 17.4 0.0 6 30 4 28 3 40 0.88 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_98 - 814 AAA_19 PF13245.1 76 0.0002 14.1 3.1 1 1 2.7e-05 0.00093 11.9 0.8 8 47 95 132 89 160 0.74 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_52 - 883 AAA_19 PF13245.1 76 0.00024 13.8 0.3 1 1 7.1e-06 0.00024 13.8 0.3 9 62 239 290 233 311 0.74 # 47072 # 49720 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_83 - 175 AAA_19 PF13245.1 76 0.00062 12.5 0.4 1 1 4.3e-05 0.0015 11.3 0.1 11 26 10 25 4 28 0.81 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_72 - 771 AAA_10 PF12846.2 304 4.1e-08 25.9 0.9 1 2 0.0015 0.051 5.9 0.3 7 39 376 408 373 412 0.83 # 69267 # 71579 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.710 1_72 - 771 AAA_10 PF12846.2 304 4.1e-08 25.9 0.9 2 2 2.5e-07 8.6e-06 18.3 0.0 203 275 434 522 424 547 0.67 # 69267 # 71579 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.710 1_83 - 175 AAA_10 PF12846.2 304 3.8e-05 16.1 0.0 1 1 1.6e-06 5.4e-05 15.6 0.0 3 23 11 31 9 82 0.74 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_98 - 814 AAA_10 PF12846.2 304 0.0002 13.8 1.1 1 2 7.2e-05 0.0025 10.2 0.0 4 44 103 143 100 166 0.84 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_98 - 814 AAA_10 PF12846.2 304 0.0002 13.8 1.1 2 2 0.087 3 0.1 1.8 55 146 525 634 481 734 0.63 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_52 - 883 ResIII PF04851.10 184 0.00073 12.3 0.0 1 2 0.00028 0.029 7.1 0.0 3 55 219 274 217 298 0.80 # 47072 # 49720 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_52 - 883 ResIII PF04851.10 184 0.00073 12.3 0.0 2 2 0.0051 0.52 3.0 0.0 147 181 386 425 371 428 0.75 # 47072 # 49720 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_52 - 883 DEAD PF00270.24 169 1.5e-09 30.5 0.0 1 3 1.2e-06 0.00012 14.5 0.0 15 70 241 296 225 314 0.74 # 47072 # 49720 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_52 - 883 DEAD PF00270.24 169 1.5e-09 30.5 0.0 2 3 7.1e-06 0.00073 12.0 0.0 121 165 387 430 358 434 0.73 # 47072 # 49720 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_52 - 883 DEAD PF00270.24 169 1.5e-09 30.5 0.0 3 3 0.053 5.4 -0.6 0.0 46 105 522 582 479 605 0.70 # 47072 # 49720 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.678 1_41 - 666 tRNA_anti-codon PF01336.20 75 9.7e-07 21.6 0.0 1 1 3.8e-08 2e-06 20.6 0.0 9 61 197 253 189 263 0.84 # 35851 # 37848 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.737 1_88 - 161 tRNA_anti-codon PF01336.20 75 0.0009 12.1 0.0 1 1 4.9e-05 0.0025 10.7 0.0 36 74 55 95 7 96 0.72 # 80645 # 81127 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718 1_83 - 175 AAA_24 PF13479.1 213 0.00022 13.8 0.0 1 1 2.8e-06 0.00028 13.4 0.0 7 38 13 43 9 79 0.82 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_83 - 175 AAA_25 PF13481.1 194 6.7e-07 21.8 1.5 1 2 6.6e-07 3.4e-05 16.2 0.2 30 50 6 26 3 32 0.94 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_83 - 175 AAA_25 PF13481.1 194 6.7e-07 21.8 1.5 2 2 0.0021 0.11 4.8 0.1 149 178 39 68 26 82 0.83 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 1_98 - 814 AAA_25 PF13481.1 194 5e-05 15.7 0.3 1 1 9.6e-07 5e-05 15.7 0.3 16 104 85 161 71 200 0.67 # 90504 # 92945 # -1 # ID=1_98;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_83 - 175 AAA_5 PF07728.9 139 0.00094 11.9 0.0 1 1 1.9e-05 0.0019 10.9 0.0 4 18 14 28 12 37 0.90 # 77968 # 78492 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.703 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ef7df6b5-5c64-4a4e-8b06-c9565c468f5f # Target file: checkm_output/bins/pGCA_001278095.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001278095.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ef7df6b5-5c64-4a4e-8b06-c9565c468f5f checkm_output/bins/pGCA_001278095.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:55 2020 # [ok]