# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 212 Mg_chelatase PF01078.16 207 0.00033 11.2 0.2 1 1 2.7e-05 0.00091 9.8 0.0 27 61 36 70 32 94 0.84 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 2_2 - 212 AAA_22 PF13401.1 131 5.6e-05 14.7 0.6 1 2 0.0023 0.039 5.5 0.0 9 23 36 50 28 75 0.88 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 2_2 - 212 AAA_22 PF13401.1 131 5.6e-05 14.7 0.6 2 2 0.00046 0.0078 7.8 0.1 57 127 115 192 87 195 0.77 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 223 AAA_22 PF13401.1 131 0.00012 13.6 0.1 1 1 1.2e-05 0.00021 12.9 0.1 3 30 26 53 24 150 0.86 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 SRP54 PF00448.17 196 0.00026 11.9 0.3 1 1 1.7e-05 0.00058 10.7 0.2 2 26 28 52 27 60 0.85 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 AAA_15 PF13175.1 415 1.4e-11 35.3 5.9 1 2 3.6e-08 1.2e-06 19.1 3.8 4 54 3 69 1 127 0.65 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 AAA_15 PF13175.1 415 1.4e-11 35.3 5.9 2 2 2.1e-07 7.1e-06 16.6 0.0 371 410 144 182 124 186 0.90 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 AAA_17 PF13207.1 121 1.5e-05 17.3 0.0 1 1 7.4e-07 2.5e-05 16.5 0.0 1 32 29 57 29 171 0.73 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 2_2 - 212 AAA_21 PF13304.1 303 1.5e-16 52.5 4.1 1 2 7.8e-06 0.00013 13.3 0.5 4 42 36 72 33 95 0.62 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 2_2 - 212 AAA_21 PF13304.1 303 1.5e-16 52.5 4.1 2 2 3.7e-14 6.3e-13 40.6 0.2 196 298 111 191 82 196 0.70 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 223 AAA_21 PF13304.1 303 4.5e-15 47.7 2.7 1 1 1.1e-14 1.9e-13 42.3 2.7 3 298 31 183 29 185 0.91 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 Zeta_toxin PF06414.7 201 5.7e-05 13.6 0.0 1 1 3.8e-06 0.00013 12.5 0.0 12 60 23 72 13 83 0.82 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 2_2 - 212 SMC_N PF02463.14 220 1.3e-06 19.1 1.2 1 2 0.0014 0.023 5.2 0.2 29 44 36 51 13 56 0.79 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 2_2 - 212 SMC_N PF02463.14 220 1.3e-06 19.1 1.2 2 2 7e-06 0.00012 12.7 0.0 151 205 143 198 101 209 0.70 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 223 SMC_N PF02463.14 220 8.5e-05 13.2 3.0 1 2 1.7e-05 0.00029 11.4 0.3 7 66 5 70 1 81 0.63 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 SMC_N PF02463.14 220 8.5e-05 13.2 3.0 2 2 0.011 0.18 2.3 0.7 113 195 95 179 52 191 0.66 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 Arch_ATPase PF01637.13 234 3.9e-05 14.8 0.2 1 1 2.8e-06 9.4e-05 13.5 0.2 8 52 17 58 13 111 0.76 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 AAA_23 PF13476.1 202 4.8e-09 28.2 0.1 1 1 3.5e-10 6e-09 27.9 0.1 2 61 3 67 2 136 0.74 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 2_2 - 212 AAA_23 PF13476.1 202 0.00041 12.1 16.0 1 1 0.00018 0.003 9.2 16.0 2 194 6 202 5 209 0.46 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 223 AAA_18 PF13238.1 129 5.3e-05 15.0 0.5 1 1 3.3e-06 0.00011 13.9 0.5 3 62 32 112 31 216 0.73 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 AAA_13 PF13166.1 712 5.3e-07 19.8 1.5 1 2 1.3e-07 2.3e-06 17.7 0.2 15 62 26 67 10 111 0.75 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 AAA_13 PF13166.1 712 5.3e-07 19.8 1.5 2 2 0.01 0.18 1.5 0.1 527 571 142 184 131 193 0.86 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_12 - 412 AAA_13 PF13166.1 712 0.00031 10.6 31.6 1 2 0.00057 0.0097 5.6 1.7 396 443 41 88 10 127 0.62 # 10288 # 11523 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.340 1_12 - 412 AAA_13 PF13166.1 712 0.00031 10.6 31.6 2 2 1.9e-05 0.00033 10.5 22.4 312 485 211 391 175 406 0.79 # 10288 # 11523 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.340 2_2 - 212 AAA_14 PF13173.1 128 6.9e-05 14.2 1.4 1 1 0.00034 0.0058 7.9 0.8 37 101 122 193 30 206 0.58 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 223 AAA_14 PF13173.1 128 7.8e-05 14.0 0.2 1 1 1e-05 0.00018 12.8 0.2 2 56 27 75 26 194 0.79 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 AAA_29 PF13555.1 62 5.2e-07 20.6 0.0 1 1 2.6e-08 9e-07 19.8 0.0 17 61 22 66 15 67 0.81 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 AAA PF00004.24 132 7.6e-06 17.6 0.1 1 1 6.3e-07 2.1e-05 16.1 0.1 2 41 31 75 30 182 0.72 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 DUF258 PF03193.11 161 1.4e-07 22.2 0.1 1 1 6.6e-09 2.2e-07 21.6 0.1 21 72 12 64 1 75 0.85 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 DLIC PF05783.6 472 3.1e-05 14.1 0.1 1 1 1.3e-06 4.5e-05 13.6 0.1 11 55 13 57 5 67 0.85 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 AAA_30 PF13604.1 196 0.00024 12.1 0.0 1 1 1.2e-05 0.00039 11.4 0.0 16 43 26 52 18 65 0.79 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 2_2 - 212 ABC_tran PF00005.22 137 7.7e-34 108.3 0.0 1 1 6e-35 1e-33 107.9 0.0 1 137 21 161 21 161 0.97 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 223 ABC_tran PF00005.22 137 1.5e-27 87.9 0.0 1 1 1.3e-28 2.3e-27 87.4 0.0 1 136 17 152 17 153 0.88 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 2_2 - 212 SbcCD_C PF13558.1 90 0.00012 13.4 0.0 1 1 5.7e-06 0.00019 12.7 0.0 54 89 141 176 126 177 0.78 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 3_10 - 97 DUF3584 PF12128.3 1201 5.2e-06 15.4 2.1 1 1 1.8e-07 6.2e-06 15.1 2.1 349 437 5 93 2 95 0.93 # 7266 # 7556 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_3 - 223 PduV-EutP PF10662.4 143 0.00014 12.8 0.1 1 1 9.3e-06 0.00032 11.6 0.0 5 28 31 53 27 74 0.80 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 2_2 - 212 PIF1 PF05970.9 364 0.00016 12.0 1.2 1 2 8.7e-06 0.00029 11.1 0.1 7 48 18 57 10 64 0.83 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 2_2 - 212 PIF1 PF05970.9 364 0.00016 12.0 1.2 2 2 0.052 1.8 -1.3 0.0 86 110 133 158 107 182 0.68 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 223 RNA_helicase PF00910.17 107 1.3e-06 20.0 0.1 1 1 7.4e-08 2.5e-06 19.1 0.1 2 99 31 120 30 126 0.72 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 UPF0079 PF02367.12 123 6e-07 20.6 0.1 1 1 4.4e-08 1.5e-06 19.3 0.1 6 40 18 52 13 60 0.85 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 NACHT PF05729.7 166 0.00016 12.8 0.1 1 1 1.7e-05 0.0003 11.9 0.1 2 21 29 48 28 57 0.87 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 2_2 - 212 NACHT PF05729.7 166 0.00028 11.9 0.1 1 1 3.5e-05 0.0006 10.9 0.1 6 21 37 52 34 58 0.89 # 272 # 907 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 223 AAA_25 PF13481.1 194 0.00013 12.8 0.0 1 1 5.9e-06 0.0002 12.2 0.0 30 56 24 50 12 78 0.83 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 1_3 - 223 AAA_5 PF07728.9 139 4.5e-06 17.8 0.0 1 1 3.3e-07 1.1e-05 16.6 0.0 3 43 31 71 29 78 0.93 # 2040 # 2708 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.253 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/21677b15-38a6-47a2-a690-51b8df3d3484 # Target file: checkm_output/bins/pGCA_001277915.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001277915.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/21677b15-38a6-47a2-a690-51b8df3d3484 checkm_output/bins/pGCA_001277915.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:52 2020 # [ok]