# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_132 - 509 Terminase_6 PF03237.10 384 8.1e-15 47.7 0.0 1 1 7.9e-17 1e-14 47.3 0.0 4 357 85 463 82 486 0.80 # 87615 # 89141 # 1 # ID=1_132;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.680 1_63 - 221 MipZ PF09140.6 261 3.6e-06 19.5 4.2 1 2 1.5e-06 0.0002 13.8 0.7 2 23 51 72 50 81 0.86 # 45305 # 45967 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.685 1_63 - 221 MipZ PF09140.6 261 3.6e-06 19.5 4.2 2 2 0.00012 0.016 7.5 0.2 95 136 80 123 69 131 0.74 # 45305 # 45967 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.685 1_80 - 172 SSB PF00436.20 104 8.9e-28 89.6 0.7 1 1 6.7e-30 8.9e-28 89.6 0.7 4 102 7 108 5 110 0.94 # 54801 # 55316 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.684 1_49 - 419 DNA_methylase PF00145.12 335 9.7e-34 110.2 0.0 1 2 4.3e-13 2.8e-11 36.3 0.0 3 86 2 84 1 87 0.92 # 36657 # 37913 # 1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.711 1_49 - 419 DNA_methylase PF00145.12 335 9.7e-34 110.2 0.0 2 2 9.1e-24 6e-22 71.4 0.0 83 331 108 403 100 406 0.67 # 36657 # 37913 # 1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.711 1_50 - 351 DNA_methylase PF00145.12 335 1.4e-32 106.4 0.0 1 2 5.6e-24 3.7e-22 72.1 0.0 3 166 2 189 1 211 0.88 # 37910 # 38962 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_50 - 351 DNA_methylase PF00145.12 335 1.4e-32 106.4 0.0 2 2 1.6e-10 1.1e-08 27.9 0.0 288 332 290 334 270 337 0.93 # 37910 # 38962 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_63 - 221 SRP54 PF00448.17 196 0.0013 11.5 0.8 1 1 0.00012 0.016 7.9 0.8 48 107 51 107 44 120 0.58 # 45305 # 45967 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.685 1_63 - 221 ArsA_ATPase PF02374.10 305 0.00018 13.9 0.1 1 2 0.0061 0.81 1.9 0.0 31 41 4 14 1 49 0.85 # 45305 # 45967 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.685 1_63 - 221 ArsA_ATPase PF02374.10 305 0.00018 13.9 0.1 2 2 2e-05 0.0026 10.1 0.0 8 33 57 78 51 92 0.73 # 45305 # 45967 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.685 1_63 - 221 CbiA PF01656.18 195 4.8e-15 48.7 3.2 1 2 3.9e-10 5.2e-08 25.8 1.6 2 21 53 72 52 79 0.92 # 45305 # 45967 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.685 1_63 - 221 CbiA PF01656.18 195 4.8e-15 48.7 3.2 2 2 4.6e-09 6.1e-07 22.3 0.0 97 165 86 154 75 179 0.79 # 45305 # 45967 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.685 1_114 - 254 DnaB_C PF03796.10 259 5.3e-06 18.7 0.0 1 1 2.3e-07 3.1e-05 16.2 0.0 15 174 16 173 4 251 0.67 # 73161 # 73922 # -1 # ID=1_114;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.646 1_97 - 62 EutN_CcmL PF03319.8 83 0.00091 12.9 0.0 1 1 7e-06 0.00092 12.9 0.0 34 62 16 44 3 58 0.82 # 62328 # 62513 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.683 1_130 - 765 AAA_10 PF12846.2 304 4.2e-07 22.9 0.3 1 2 6.6e-05 0.0087 8.7 0.1 2 43 396 437 395 461 0.89 # 84423 # 86717 # 1 # ID=1_130;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_130 - 765 AAA_10 PF12846.2 304 4.2e-07 22.9 0.3 2 2 6.3e-06 0.00083 12.1 0.0 214 263 478 534 453 546 0.83 # 84423 # 86717 # 1 # ID=1_130;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_130 - 765 DUF2075 PF09848.4 352 0.0018 10.6 0.0 1 1 1.9e-05 0.0025 10.1 0.0 4 143 398 546 395 555 0.71 # 84423 # 86717 # 1 # ID=1_130;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.692 1_42 - 75 Terminase_GpA PF05876.7 557 0.00052 11.7 0.2 1 1 4.2e-06 0.00056 11.6 0.2 198 258 7 68 5 74 0.81 # 31451 # 31675 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.662 1_80 - 172 tRNA_anti-codon PF01336.20 75 0.00012 15.3 0.5 1 1 1.6e-06 0.00022 14.4 0.1 31 72 58 107 49 110 0.82 # 54801 # 55316 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.684 1_114 - 254 AAA_25 PF13481.1 194 6.2e-11 35.3 0.0 1 1 7.5e-13 9.8e-11 34.7 0.0 14 186 3 175 1 181 0.80 # 73161 # 73922 # -1 # ID=1_114;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.646 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2a23f19d-ffd9-46fa-8c4d-5a8659d91456 # Target file: checkm_output/bins/pGCA_001267885.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001267885.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2a23f19d-ffd9-46fa-8c4d-5a8659d91456 checkm_output/bins/pGCA_001267885.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:53 2020 # [ok]