# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 519 UPF0020 PF01170.13 180 2e-08 26.1 0.0 1 1 7.5e-10 4.2e-08 25.0 0.0 23 122 218 310 207 316 0.81 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 519 Seryl_tRNA_N PF02403.17 108 0.088 5.0 11.8 1 2 0.059 3.3 -0.1 0.0 68 90 103 125 97 137 0.70 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 519 Seryl_tRNA_N PF02403.17 108 0.088 5.0 11.8 2 2 0.00046 0.026 6.7 4.9 25 105 432 513 418 516 0.71 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 519 Methyltransf_18 PF12847.2 112 8e-05 15.3 0.0 1 1 3.8e-06 0.00021 14.0 0.0 4 79 226 304 223 355 0.79 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_10 - 706 AAA_22 PF13401.1 131 5.4e-05 15.4 0.1 1 1 4e-06 0.00023 13.4 0.0 7 24 500 517 494 565 0.89 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_10 - 215 AAA_17 PF13207.1 121 2.1e-06 20.6 1.2 1 1 1.3e-07 3.7e-06 19.9 1.2 23 113 24 122 21 206 0.85 # 11009 # 11653 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.341 2_10 - 706 AAA_17 PF13207.1 121 3.4e-06 20.0 0.8 1 2 0.0071 0.2 4.6 0.1 11 67 29 87 28 167 0.70 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_17 PF13207.1 121 3.4e-06 20.0 0.8 2 2 1.8e-05 0.0005 13.0 0.0 1 19 499 517 499 591 0.88 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_21 PF13304.1 303 2.1e-09 29.8 9.8 1 2 1.7e-08 9.7e-07 21.0 1.7 3 66 501 566 500 581 0.75 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_21 PF13304.1 303 2.1e-09 29.8 9.8 2 2 8.2e-09 4.6e-07 22.1 1.4 182 288 565 659 540 674 0.72 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 Miro PF08477.8 119 1.5e-06 20.8 0.5 1 1 8.8e-08 4.9e-06 19.2 0.5 1 55 499 560 499 599 0.78 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 MobB PF03205.9 140 4.8e-05 15.2 0.1 1 1 2.6e-06 0.00014 13.6 0.1 3 24 500 521 498 538 0.85 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 T2SE PF00437.15 272 4.9e-06 17.7 0.1 1 1 1.7e-07 9.3e-06 16.7 0.1 112 156 481 525 462 533 0.81 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 SMC_N PF02463.14 220 6.4e-07 20.8 6.6 1 1 3.1e-08 1.8e-06 19.4 6.6 26 212 499 676 485 681 0.62 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_16 PF13191.1 185 6.4e-05 15.1 0.0 1 1 1.9e-06 0.00011 14.3 0.0 23 50 496 523 486 580 0.83 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_23 PF13476.1 202 0.00019 13.9 18.4 1 3 0.062 1.7 0.9 2.7 72 143 89 156 28 194 0.58 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_23 PF13476.1 202 0.00019 13.9 18.4 2 3 0.032 0.9 1.9 0.0 95 176 354 460 310 486 0.56 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_23 PF13476.1 202 0.00019 13.9 18.4 3 3 1.5e-05 0.00041 12.8 9.6 21 88 499 618 485 701 0.44 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_8 - 519 AAA_23 PF13476.1 202 0.017 7.5 11.2 1 1 1.1e-05 0.00032 13.1 1.3 106 201 423 512 334 513 0.59 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_10 - 706 AAA_18 PF13238.1 129 0.0096 8.3 10.7 1 1 3.8e-06 0.00021 13.7 0.9 1 23 500 532 500 600 0.71 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_17 - 278 AAA_14 PF13173.1 128 0.032 6.3 10.1 1 1 2.1e-05 0.00058 11.9 0.5 27 90 86 156 75 199 0.65 # 17076 # 17909 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.242 2_10 - 706 AAA_14 PF13173.1 128 0.043 5.8 12.1 1 2 5e-05 0.0014 10.6 0.2 3 77 498 572 496 612 0.68 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_14 PF13173.1 128 0.043 5.8 12.1 2 2 0.029 0.8 1.7 0.1 50 105 645 693 612 699 0.68 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_29 PF13555.1 62 1.5e-06 19.8 0.1 1 1 6.1e-08 3.4e-06 18.7 0.1 18 51 493 525 487 533 0.81 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA PF00004.24 132 9.4e-05 14.7 2.5 1 2 0.067 3.8 -0.2 0.0 53 74 316 340 310 366 0.75 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA PF00004.24 132 9.4e-05 14.7 2.5 2 2 1.1e-05 0.00064 12.0 1.2 1 99 500 613 500 677 0.60 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_8 - 519 N6_Mtase PF02384.11 311 2e-118 387.0 0.4 1 1 4.9e-120 2.7e-118 386.6 0.4 2 310 177 480 176 481 0.97 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_10 - 706 DUF258 PF03193.11 161 4e-06 18.2 0.4 1 1 1.6e-07 8.7e-06 17.1 0.4 23 99 484 564 467 587 0.67 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_8 - 519 Methyltransf_26 PF13659.1 117 1.1e-15 49.8 0.0 1 1 5.9e-17 3.3e-15 48.3 0.0 3 116 226 355 225 356 0.82 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_10 - 706 AAA_30 PF13604.1 196 0.00026 12.7 0.0 1 1 1.7e-05 0.00095 10.8 0.0 20 50 499 529 491 553 0.82 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 FtsK_SpoIIIE PF01580.13 205 0.00015 13.3 0.1 1 1 4.9e-06 0.00027 12.5 0.1 31 62 490 520 483 528 0.77 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_8 - 519 MTS PF05175.9 170 2.3e-09 28.9 0.0 1 1 8.3e-11 4.7e-09 27.9 0.0 20 140 210 354 202 376 0.87 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_10 - 706 ABC_tran PF00005.22 137 4.5e-37 119.5 3.2 1 1 9.7e-39 5.4e-37 119.2 2.1 1 137 487 635 487 635 0.87 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 1_8 - 519 Eco57I PF07669.6 106 3.8e-06 19.4 0.0 1 1 4.3e-07 2.4e-05 16.8 0.0 3 103 295 405 293 408 0.82 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_8 - 519 AviRa PF11599.3 246 7.7e-05 13.8 0.0 1 1 2.6e-06 0.00015 12.9 0.0 49 99 221 269 206 281 0.84 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 2_10 - 706 AAA_19 PF13245.1 76 6e-05 14.9 0.0 1 1 2.1e-06 0.00012 13.9 0.0 7 36 494 522 490 539 0.82 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_10 PF12846.2 304 0.00016 13.2 0.1 1 1 7.8e-06 0.00044 11.8 0.1 4 22 500 518 498 528 0.89 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 8_1 - 46 NusA_N PF08529.6 122 0.00036 12.6 0.0 1 1 7.9e-06 0.00044 12.4 0.0 1 26 14 40 14 42 0.80 # 3 # 140 # -1 # ID=8_1;partial=10;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.297 1_6 - 929 ResIII PF04851.10 184 7.2e-35 112.5 3.8 1 2 3e-36 1.7e-34 111.3 0.2 2 183 239 401 238 402 0.86 # 4668 # 7454 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_6 - 929 ResIII PF04851.10 184 7.2e-35 112.5 3.8 2 2 0.027 1.5 0.7 0.3 44 104 718 777 694 832 0.69 # 4668 # 7454 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_8 - 519 Methyltransf_31 PF13847.1 152 5.4e-06 18.2 0.0 1 1 3.7e-07 2.1e-05 16.3 0.0 3 112 223 356 221 440 0.73 # 8126 # 9682 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_6 - 929 DEAD PF00270.24 169 7.2e-12 37.2 0.6 1 2 2.7e-12 1.5e-10 32.9 0.0 4 164 245 402 242 407 0.74 # 4668 # 7454 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_6 - 929 DEAD PF00270.24 169 7.2e-12 37.2 0.6 2 2 0.016 0.87 1.1 0.1 50 85 498 535 469 581 0.67 # 4668 # 7454 # 1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 2_11 - 241 PDH PF02153.12 258 9.6e-05 13.4 0.0 1 1 4.9e-06 0.00027 11.9 0.0 14 59 39 83 29 96 0.75 # 9899 # 10621 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 2_10 - 706 AAA_24 PF13479.1 213 2.1e-07 22.8 0.3 1 1 9.9e-09 5.5e-07 21.4 0.3 3 79 497 567 495 599 0.84 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 NACHT PF05729.7 166 8.1e-06 17.7 0.1 1 1 3.1e-07 1.7e-05 16.6 0.1 3 25 500 522 498 530 0.86 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_25 PF13481.1 194 0.00021 12.8 0.0 1 1 6.9e-06 0.00039 11.9 0.0 31 54 495 518 485 540 0.81 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_5 PF07728.9 139 6.4e-05 14.8 1.4 1 2 2e-05 0.0011 10.8 0.1 2 31 500 529 499 549 0.81 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 2_10 - 706 AAA_5 PF07728.9 139 6.4e-05 14.8 1.4 2 2 0.014 0.76 1.6 0.0 30 63 565 598 545 640 0.80 # 7780 # 9897 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.271 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e0b01b6d-3fa3-4553-861c-cc1e482b5bb5 # Target file: checkm_output/bins/pGCA_001045995.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001045995.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e0b01b6d-3fa3-4553-861c-cc1e482b5bb5 checkm_output/bins/pGCA_001045995.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:45 2020 # [ok]