# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 193 RuvB_C PF05491.8 76 0.00022 12.3 0.4 1 2 0.038 1.3 0.2 0.1 55 67 121 133 117 139 0.82 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_7 - 193 RuvB_C PF05491.8 76 0.00022 12.3 0.4 2 2 8.6e-05 0.003 8.7 0.0 6 43 145 178 142 182 0.86 # 8271 # 8849 # 1 # ID=1_7;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_15 - 131 AAA_15 PF13175.1 415 2.5e-06 18.1 1.5 1 1 1.1e-07 3.9e-06 17.5 1.5 291 411 9 112 2 116 0.69 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 5_1 - 231 AAA_17 PF13207.1 121 8.1e-05 14.9 0.7 1 1 4e-06 0.00014 14.2 0.7 23 112 30 127 26 178 0.80 # 44 # 736 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_15 - 131 AAA_21 PF13304.1 303 1.4e-11 36.2 0.4 1 1 4.3e-13 1.5e-11 36.1 0.4 197 301 21 115 1 117 0.68 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_15 - 131 SMC_N PF02463.14 220 4.4e-07 20.7 1.3 1 1 1.5e-08 5.1e-07 20.5 1.3 105 213 25 127 4 130 0.69 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_15 - 131 AAA_13 PF13166.1 712 1.4e-06 18.4 0.7 1 1 6.6e-08 2.3e-06 17.7 0.7 499 578 52 120 10 127 0.81 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_15 - 131 ABC_tran PF00005.22 137 5.3e-16 50.6 0.2 1 1 2.2e-17 7.7e-16 50.1 0.2 65 136 2 81 1 82 0.86 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_15 - 131 SbcCD_C PF13558.1 90 5.5e-06 17.7 0.0 1 1 2.5e-06 8.7e-05 13.9 0.0 23 88 44 96 21 98 0.79 # 12900 # 13292 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_2 - 209 Ribosomal_L4 PF00573.17 192 0.00033 11.5 1.4 1 2 1.8e-05 0.00063 10.6 0.2 127 182 8 66 2 69 0.80 # 1722 # 2348 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_2 - 209 Ribosomal_L4 PF00573.17 192 0.00033 11.5 1.4 2 2 0.038 1.3 -0.3 0.1 62 76 132 148 96 199 0.70 # 1722 # 2348 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ecfd482b-e020-44e2-bc3a-5d85a816a22f # Target file: checkm_output/bins/pGCA_001045795.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001045795.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ecfd482b-e020-44e2-bc3a-5d85a816a22f checkm_output/bins/pGCA_001045795.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:44 2020 # [ok]