# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_39 - 213 MipZ PF09140.6 261 4.5e-16 50.6 0.7 1 1 6e-15 3e-13 41.3 0.7 2 135 3 114 2 120 0.80 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 YhjQ PF06564.7 244 4.6e-11 34.4 0.1 1 2 8.4e-06 0.00042 11.6 0.2 1 41 1 41 1 45 0.93 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 YhjQ PF06564.7 244 4.6e-11 34.4 0.1 2 2 1.4e-08 7.2e-07 20.7 0.0 97 231 58 196 43 205 0.76 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_8 - 987 UvrD_C_2 PF13538.1 104 2.8e-13 41.9 0.1 1 1 3.5e-14 1.8e-12 39.3 0.0 3 103 810 915 808 916 0.72 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_7 - 525 DUF87 PF01935.12 229 1e-05 17.3 0.0 1 1 6e-07 1.5e-05 16.8 0.0 24 68 141 184 132 304 0.85 # 3970 # 5544 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_21 - 890 DUF87 PF01935.12 229 0.0001 14.1 0.2 1 1 2.6e-05 0.00065 11.5 0.0 19 45 517 543 514 556 0.89 # 16700 # 19369 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_21 - 890 AAA_22 PF13401.1 131 4.9e-05 15.4 0.0 1 1 1.6e-05 0.00026 13.1 0.0 4 49 521 561 516 640 0.61 # 16700 # 19369 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_13 - 341 AAA_22 PF13401.1 131 8.7e-05 14.6 0.0 1 1 1.1e-05 0.00019 13.5 0.0 6 82 176 247 171 254 0.90 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_8 - 987 AAA_22 PF13401.1 131 0.00013 14.0 3.8 1 1 4.8e-05 0.00079 11.5 0.4 6 125 502 609 497 615 0.79 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_39 - 213 DUF1611 PF07755.6 301 8.1e-05 13.2 3.6 1 1 3.1e-05 0.0016 9.0 3.6 124 192 13 84 4 174 0.84 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 SRP54 PF00448.17 196 2.9e-07 22.0 1.0 1 1 9.9e-09 5e-07 21.2 1.0 10 91 11 85 2 95 0.80 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 MobB PF03205.9 140 2.8e-05 15.8 0.2 1 1 9.6e-07 4.8e-05 15.0 0.2 5 65 7 64 3 85 0.70 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 LpxK PF02606.9 326 0.00013 12.9 0.5 1 1 5.3e-06 0.00027 11.8 0.2 44 70 9 35 7 67 0.87 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 ArsA_ATPase PF02374.10 305 7.2e-07 20.4 1.5 1 2 2.9e-07 1.5e-05 16.1 0.5 9 42 10 43 1 64 0.87 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 ArsA_ATPase PF02374.10 305 7.2e-07 20.4 1.5 2 2 0.0028 0.14 3.0 0.0 121 136 72 87 62 91 0.81 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_8 - 987 PhoH PF02562.11 205 1.5e-09 29.2 4.0 1 2 2e-07 5.1e-06 17.7 0.5 4 47 483 527 481 533 0.87 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_8 - 987 PhoH PF02562.11 205 1.5e-09 29.2 4.0 2 2 1.2e-05 0.00029 12.0 0.2 121 163 574 617 568 654 0.72 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_39 - 213 PhoH PF02562.11 205 0.00058 11.0 0.9 1 1 3.9e-05 0.00097 10.3 0.9 20 46 3 29 1 35 0.87 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_46 - 288 AFG1_ATPase PF03969.11 362 0.00019 12.1 0.0 1 1 4.6e-06 0.00023 11.9 0.0 269 323 142 196 67 214 0.86 # 33536 # 34399 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.617 1_13 - 341 T2SE PF00437.15 272 3e-68 221.5 0.0 1 1 7.6e-70 3.8e-68 221.2 0.0 4 268 13 322 10 324 0.97 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_39 - 213 Methyltransf_24 PF13578.1 106 1.8e-06 20.7 0.1 1 1 6.7e-08 3.3e-06 19.9 0.1 4 90 12 99 10 109 0.72 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 VirC1 PF07015.6 231 4.9e-11 34.0 0.1 1 1 1.4e-12 6.9e-11 33.5 0.1 1 182 1 170 1 178 0.77 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 Fer4_NifH PF00142.13 273 0.00021 12.4 0.0 1 2 0.0001 0.0051 7.9 0.0 7 40 9 42 2 79 0.85 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 Fer4_NifH PF00142.13 273 0.00021 12.4 0.0 2 2 0.004 0.2 2.6 0.0 189 246 143 201 131 208 0.81 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_13 - 341 AAA_16 PF13191.1 185 0.00042 12.2 0.0 1 1 4e-05 0.00099 11.0 0.0 25 80 175 229 154 267 0.71 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_8 - 987 AAA_16 PF13191.1 185 0.00081 11.3 6.2 1 1 4.3e-05 0.0011 10.9 0.6 16 71 492 545 488 696 0.85 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_21 - 890 AAA_23 PF13476.1 202 5.7e-05 15.4 0.1 1 1 4.4e-06 0.00022 13.5 0.0 20 39 522 541 507 545 0.86 # 16700 # 19369 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_38 - 235 AAA_13 PF13166.1 712 0.00053 10.4 2.8 1 1 1.2e-05 0.00059 10.2 2.8 369 470 82 182 13 199 0.79 # 29819 # 30523 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.687 1_39 - 213 CbiA PF01656.18 195 5.2e-29 92.9 0.1 1 1 3.2e-30 8.1e-29 92.3 0.1 1 190 4 167 4 174 0.79 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_2 - 236 CbiA PF01656.18 195 9.1e-08 23.6 0.1 1 2 0.00051 0.013 6.8 0.0 1 20 3 22 3 24 0.91 # 677 # 1384 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_2 - 236 CbiA PF01656.18 195 9.1e-08 23.6 0.1 2 2 1.8e-06 4.6e-05 14.8 0.1 118 168 94 144 29 177 0.88 # 677 # 1384 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 890 AAA_29 PF13555.1 62 2.2e-06 19.1 0.1 1 2 2.7e-06 0.00014 13.4 0.0 14 45 512 543 508 551 0.81 # 16700 # 19369 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_21 - 890 AAA_29 PF13555.1 62 2.2e-06 19.1 0.1 2 2 0.0058 0.29 2.7 0.0 4 20 663 679 661 683 0.77 # 16700 # 19369 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_13 - 341 MMR_HSR1 PF01926.18 116 6.8e-05 14.8 0.0 1 1 2.4e-06 0.00012 14.0 0.0 8 26 183 198 176 237 0.77 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_7 - 525 TraG-D_C PF12696.2 128 2.7e-22 70.9 0.0 1 1 8.5e-24 4.3e-22 70.3 0.0 1 127 368 490 368 491 0.90 # 3970 # 5544 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_39 - 213 AAA_31 PF13614.1 157 8e-11 34.0 0.0 1 2 3.4e-06 0.00017 13.5 0.1 2 41 3 42 2 57 0.82 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 AAA_31 PF13614.1 157 8e-11 34.0 0.0 2 2 7.4e-08 3.7e-06 18.9 0.0 101 153 60 112 50 116 0.88 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_8 - 987 AAA_30 PF13604.1 196 2.2e-55 179.1 9.8 1 1 1.2e-56 5.8e-55 177.8 9.8 2 193 484 672 483 675 0.97 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_7 - 525 FtsK_SpoIIIE PF01580.13 205 2.1e-07 22.5 0.0 1 2 5.1e-08 1.3e-06 20.0 0.0 23 80 125 178 94 185 0.72 # 3970 # 5544 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_7 - 525 FtsK_SpoIIIE PF01580.13 205 2.1e-07 22.5 0.0 2 2 0.08 2 -0.3 0.0 145 174 296 362 258 384 0.70 # 3970 # 5544 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_13 - 341 FtsK_SpoIIIE PF01580.13 205 0.00041 11.8 0.0 1 1 2.7e-05 0.00067 11.1 0.0 28 62 164 198 139 204 0.79 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_13 - 341 ABC_tran PF00005.22 137 0.00042 12.6 0.0 1 1 1.5e-05 0.00075 11.8 0.0 12 51 175 215 167 313 0.86 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_13 - 341 TIGR03263 TIGR03263 180 8.7e-06 17.1 0.0 1 1 2.7e-07 1.3e-05 16.5 0.0 3 51 176 225 174 245 0.81 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_8 - 987 AAA_19 PF13245.1 76 3.5e-08 25.1 8.9 1 2 1.4e-08 3.5e-07 21.9 0.6 2 75 491 562 491 563 0.83 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_8 - 987 AAA_19 PF13245.1 76 3.5e-08 25.1 8.9 2 2 0.00064 0.016 7.0 0.1 30 62 680 712 674 731 0.75 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_39 - 213 AAA_19 PF13245.1 76 4.2e-05 15.2 2.4 1 2 4.5e-05 0.0011 10.7 0.3 20 48 12 36 10 56 0.84 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 AAA_19 PF13245.1 76 4.2e-05 15.2 2.4 2 2 0.0066 0.16 3.7 0.1 1 19 68 87 68 132 0.89 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_21 - 890 AAA_10 PF12846.2 304 3.1e-20 64.7 0.0 1 1 4.2e-21 7.1e-20 63.5 0.0 2 304 522 803 521 803 0.87 # 16700 # 19369 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_7 - 525 AAA_10 PF12846.2 304 1e-10 33.4 0.1 1 2 3.3e-09 5.6e-08 24.4 0.0 1 43 140 182 140 266 0.82 # 3970 # 5544 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_7 - 525 AAA_10 PF12846.2 304 1e-10 33.4 0.1 2 2 0.00078 0.013 6.8 0.0 214 300 353 447 319 451 0.74 # 3970 # 5544 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_39 - 213 AAA_10 PF12846.2 304 0.0001 13.7 0.0 1 1 3.1e-05 0.00052 11.4 0.0 11 48 12 56 10 104 0.86 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_38 - 235 DUF3584 PF12128.3 1201 0.0084 5.3 21.9 1 2 0.00033 0.016 4.3 10.8 301 364 78 144 21 151 0.74 # 29819 # 30523 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.687 1_38 - 235 DUF3584 PF12128.3 1201 0.0084 5.3 21.9 2 2 0.00021 0.011 4.9 4.7 606 662 149 205 144 211 0.90 # 29819 # 30523 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.687 1_8 - 987 Viral_helicase1 PF01443.13 234 4.4e-14 44.4 1.4 1 2 4.4e-08 2.2e-06 19.2 0.1 3 141 505 651 503 701 0.75 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_8 - 987 Viral_helicase1 PF01443.13 234 4.4e-14 44.4 1.4 2 2 1.5e-09 7.6e-08 24.0 0.1 183 234 869 917 847 917 0.86 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_8 - 987 DUF2075 PF09848.4 352 1.6e-05 15.9 0.5 1 1 1.2e-06 5.9e-05 14.0 0.7 4 129 503 611 500 695 0.65 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_7 - 525 DEAD PF00270.24 169 0.00039 11.9 0.0 1 1 1.2e-05 0.00062 11.2 0.0 8 50 134 174 132 292 0.88 # 3970 # 5544 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_7 - 525 TrwB_AAD_bind PF10412.4 386 2.3e-126 413.3 0.0 1 1 1.1e-127 2.7e-126 413.1 0.0 2 386 127 510 126 510 0.96 # 3970 # 5544 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_13 - 341 TrwB_AAD_bind PF10412.4 386 0.00014 12.4 0.0 1 1 1.6e-05 0.0004 11.0 0.0 14 50 173 209 169 211 0.87 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_8 - 987 AAA_11 PF13086.1 236 6.9e-05 14.4 4.9 1 1 1.7e-05 0.00084 10.8 4.9 2 115 484 657 483 737 0.53 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_13 - 341 Guanylate_kin PF00625.16 183 0.00021 12.7 0.0 1 1 6.2e-06 0.00031 12.1 0.0 3 47 175 219 173 243 0.85 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_7 - 525 T4SS-DNA_transf PF02534.9 469 6.9e-22 69.5 0.0 1 2 0.074 3.7 -2.2 0.0 47 84 143 182 99 185 0.79 # 3970 # 5544 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_7 - 525 T4SS-DNA_transf PF02534.9 469 6.9e-22 69.5 0.0 2 2 3.2e-23 1.6e-21 68.3 0.0 223 447 291 512 226 520 0.86 # 3970 # 5544 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_46 - 288 MethyltransfD12 PF02086.10 260 3.9e-18 57.7 0.0 1 1 1.3e-19 6.6e-18 57.0 0.0 1 220 13 224 13 251 0.82 # 33536 # 34399 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.617 1_8 - 987 PIF1 PF05970.9 364 0.0002 12.2 0.8 1 1 6.9e-06 0.00034 11.5 0.2 2 57 484 540 483 612 0.76 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_13 - 341 GTP_EFTU PF00009.22 188 3.3e-05 15.3 0.0 1 1 2e-06 5e-05 14.7 0.0 2 29 173 200 172 218 0.82 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_39 - 213 GTP_EFTU PF00009.22 188 7.7e-05 14.1 0.0 1 1 4.8e-06 0.00012 13.5 0.0 14 99 13 105 8 109 0.68 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_21 - 890 AAA_25 PF13481.1 194 9.1e-06 17.1 0.0 1 1 1.2e-06 3.1e-05 15.3 0.0 28 79 518 568 497 631 0.73 # 16700 # 19369 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_39 - 213 AAA_25 PF13481.1 194 0.00043 11.6 2.4 1 1 0.00021 0.0052 8.1 1.8 41 76 10 35 2 98 0.67 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_39 - 213 AAA_28 PF13521.1 163 7.6e-05 14.6 0.2 1 1 5.4e-06 0.00013 13.8 0.2 9 94 12 99 11 192 0.85 # 30647 # 31285 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.645 1_13 - 341 AAA_28 PF13521.1 163 0.00016 13.6 0.2 1 1 2.4e-05 0.0006 11.7 0.0 2 39 177 218 176 246 0.81 # 10787 # 11809 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_8 - 987 Herpes_Helicase PF02689.9 819 9.2e-06 15.5 0.1 1 2 0.02 0.98 -1.2 0.0 172 209 549 586 500 593 0.74 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 1_8 - 987 Herpes_Helicase PF02689.9 819 9.2e-06 15.5 0.1 2 2 7.5e-07 3.7e-05 13.5 0.0 742 785 871 915 855 923 0.87 # 5558 # 8518 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.636 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0f75cc37-c6a9-463e-a1e9-8f5ee9fcc5bc # Target file: checkm_output/bins/pGCA_001042735.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001042735.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0f75cc37-c6a9-463e-a1e9-8f5ee9fcc5bc checkm_output/bins/pGCA_001042735.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:46 2020 # [ok]