# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_16 - 255 MipZ PF09140.6 261 8.6e-14 42.0 0.7 1 1 6.6e-13 1.5e-11 34.6 0.7 2 134 3 154 2 169 0.70 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 YhjQ PF06564.7 244 1.5e-09 28.3 0.0 1 1 1.5e-10 3.5e-09 27.1 0.0 1 231 1 245 1 252 0.72 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 SRP54 PF00448.17 196 0.0001 12.6 0.4 1 2 1.3e-05 0.0003 11.1 0.1 11 39 12 40 3 57 0.93 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 SRP54 PF00448.17 196 0.0001 12.6 0.4 2 2 0.081 1.9 -1.3 0.0 83 91 118 126 93 193 0.66 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 ArsA_ATPase PF02374.10 305 3.4e-10 30.2 0.3 1 2 7.1e-11 1.6e-09 28.0 0.0 8 56 9 57 1 83 0.85 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 ArsA_ATPase PF02374.10 305 3.4e-10 30.2 0.3 2 2 0.02 0.45 0.2 0.0 124 143 116 135 106 215 0.57 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 VirC1 PF07015.6 231 1.4e-07 21.6 0.2 1 2 3.8e-08 8.8e-07 19.0 0.0 1 49 1 49 1 80 0.82 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 VirC1 PF07015.6 231 1.4e-07 21.6 0.2 2 2 0.019 0.43 0.4 0.0 83 115 118 150 103 194 0.75 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 Fer4_NifH PF00142.13 273 1.5e-10 31.4 1.2 1 2 3.5e-08 8.1e-07 19.2 0.2 8 57 10 59 3 87 0.83 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 Fer4_NifH PF00142.13 273 1.5e-10 31.4 1.2 2 2 8.5e-06 0.0002 11.4 0.1 142 247 140 251 109 254 0.74 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 CbiA PF01656.18 195 1.6e-42 135.9 1.3 1 1 9.1e-44 2.1e-42 135.5 1.3 1 194 4 220 4 221 0.87 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_16 - 255 AAA_31 PF13614.1 157 2.7e-13 41.0 0.9 1 1 1.8e-14 4.2e-13 40.4 0.9 2 154 3 154 2 156 0.79 # 14543 # 15307 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.264 1_18 - 328 DUF3584 PF12128.3 1201 0.0027 5.8 48.3 1 1 0.00016 0.0036 5.4 48.3 240 512 44 318 26 326 0.70 # 15836 # 16819 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.283 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c24eb8ff-fb25-4384-b2c4-fb9bf81ff025 # Target file: checkm_output/bins/pGCA_001038625.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001038625.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c24eb8ff-fb25-4384-b2c4-fb9bf81ff025 checkm_output/bins/pGCA_001038625.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:44 2020 # [ok]