# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 193 RuvB_C PF05491.8 76 0.00022 12.3 0.4 1 2 0.038 1.3 0.2 0.1 55 67 121 133 117 139 0.82 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_12 - 193 RuvB_C PF05491.8 76 0.00022 12.3 0.4 2 2 8.6e-05 0.0029 8.7 0.0 6 43 145 178 142 182 0.86 # 7671 # 8249 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_3 - 67 Seryl_tRNA_N PF02403.17 108 0.0003 12.2 6.1 1 1 9.1e-06 0.00031 12.2 6.1 31 89 5 64 1 66 0.87 # 1185 # 1385 # 1 # ID=1_3;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.229 1_5 - 68 AAA_15 PF13175.1 415 2.3e-05 14.9 0.0 1 1 7.7e-07 2.6e-05 14.7 0.0 371 411 10 49 5 53 0.90 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 5_1 - 231 AAA_17 PF13207.1 121 7.8e-05 14.9 0.7 1 1 4e-06 0.00013 14.2 0.7 23 112 30 127 26 178 0.80 # 61 # 753 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.330 1_5 - 68 AAA_21 PF13304.1 303 3.6e-07 21.7 0.1 1 1 1.2e-08 4.2e-07 21.5 0.1 253 301 7 52 2 54 0.87 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_5 - 68 SMC_N PF02463.14 220 0.00015 12.4 0.1 1 1 4.6e-06 0.00016 12.3 0.1 161 213 11 64 2 67 0.85 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_5 - 68 AAA_13 PF13166.1 712 1.6e-06 18.2 0.3 1 1 5.2e-08 1.8e-06 18.0 0.3 527 578 8 57 3 65 0.92 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_5 - 68 ABC_tran PF00005.22 137 0.00016 13.4 0.1 1 1 9.6e-06 0.00033 12.4 0.0 119 136 1 18 1 19 0.94 # 3232 # 3435 # -1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_17 - 209 Ribosomal_L4 PF00573.17 192 0.00032 11.5 1.4 1 2 1.8e-05 0.00062 10.6 0.2 127 182 8 66 2 69 0.80 # 14172 # 14798 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_17 - 209 Ribosomal_L4 PF00573.17 192 0.00032 11.5 1.4 2 2 0.038 1.3 -0.3 0.1 62 76 132 148 96 199 0.70 # 14172 # 14798 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/26037fe0-094b-4205-94dd-7959d88a624c # Target file: checkm_output/bins/pGCA_001021895.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001021895.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/26037fe0-094b-4205-94dd-7959d88a624c checkm_output/bins/pGCA_001021895.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:37 2020 # [ok]