# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 209 FeoB_N PF02421.13 156 1.6e-05 15.4 3.7 1 2 4.3e-05 0.0012 9.2 0.0 3 24 30 51 28 57 0.89 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 FeoB_N PF02421.13 156 1.6e-05 15.4 3.7 2 2 0.00037 0.011 6.2 1.3 85 131 161 207 129 208 0.78 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_22 PF13401.1 131 1.6e-06 19.4 1.0 1 1 1.7e-07 5e-06 17.9 1.0 4 122 27 188 24 197 0.70 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_15 PF13175.1 415 3.4e-09 27.3 10.0 1 2 2.8e-06 8.2e-05 12.9 6.6 7 91 11 87 4 110 0.62 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_15 PF13175.1 415 3.4e-09 27.3 10.0 2 2 5.3e-07 1.5e-05 15.2 3.5 285 411 82 190 61 194 0.67 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_17 PF13207.1 121 7.4e-06 18.0 0.3 1 1 1.6e-06 2.4e-05 16.4 0.3 3 58 31 88 30 207 0.73 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_8 - 225 AAA_17 PF13207.1 121 7e-05 14.8 0.9 1 1 7.7e-06 0.00011 14.2 0.9 23 112 24 121 19 180 0.80 # 8450 # 9124 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.332 1_19 - 209 AAA_21 PF13304.1 303 1.2e-16 52.7 5.3 1 1 3.3e-16 9.6e-15 46.4 5.3 3 301 31 193 29 195 0.94 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 Zeta_toxin PF06414.7 201 3.4e-05 14.2 0.0 1 1 1.7e-06 4.8e-05 13.7 0.0 14 62 25 74 14 97 0.82 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 SMC_N PF02463.14 220 4.4e-08 23.7 6.0 1 1 3.4e-09 9.9e-08 22.6 6.0 9 213 12 205 3 208 0.76 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_16 PF13191.1 185 4e-05 14.8 0.7 1 1 2.7e-06 7.8e-05 13.8 0.7 24 44 27 46 14 201 0.76 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_23 PF13476.1 202 9e-05 14.0 9.8 1 1 2.3e-05 0.00068 11.1 9.8 10 128 17 135 11 184 0.56 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_18 PF13238.1 129 0.00039 11.9 4.6 1 1 5.7e-05 0.0017 9.9 4.6 3 64 32 120 31 203 0.64 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_13 PF13166.1 712 1.5e-07 21.3 5.0 1 2 0.00014 0.0041 6.7 1.8 11 77 23 87 13 132 0.63 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_13 PF13166.1 712 1.5e-07 21.3 5.0 2 2 2.3e-07 6.7e-06 15.9 0.6 499 578 130 198 96 205 0.82 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 KaiC PF06745.8 227 5.2e-05 13.6 0.4 1 1 3e-06 8.7e-05 12.8 0.2 15 141 23 148 15 162 0.79 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_29 PF13555.1 62 1.6e-07 22.0 0.0 1 1 1e-08 2.9e-07 21.2 0.0 16 40 21 44 13 48 0.83 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 MMR_HSR1 PF01926.18 116 4.1e-06 17.9 2.8 1 1 3e-07 8.6e-06 16.9 2.8 3 91 31 134 29 203 0.64 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 DUF258 PF03193.11 161 3.7e-10 30.4 0.1 1 1 2.3e-11 6.6e-10 29.6 0.1 13 67 4 59 1 69 0.88 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 NTPase_1 PF03266.10 168 9.3e-05 13.3 0.3 1 2 0.0012 0.035 5.0 0.0 3 19 31 47 29 57 0.86 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 NTPase_1 PF03266.10 168 9.3e-05 13.3 0.3 2 2 0.00037 0.011 6.6 0.2 80 135 134 191 104 207 0.74 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 Dynamin_N PF00350.18 168 7.6e-05 13.7 2.6 1 1 7.1e-06 0.00021 12.3 2.6 2 35 31 64 31 196 0.64 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 ABC_tran PF00005.22 137 1.1e-36 117.3 0.1 1 1 5.4e-38 1.6e-36 116.8 0.1 1 136 17 159 17 160 0.93 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 AAA_10 PF12846.2 304 4.4e-05 14.1 0.2 1 1 2.6e-06 7.6e-05 13.3 0.1 3 22 29 48 27 78 0.84 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_19 - 209 SbcCD_C PF13558.1 90 1.6e-05 16.0 0.0 1 1 7.3e-06 0.00021 12.4 0.0 24 88 123 174 102 176 0.79 # 15659 # 16285 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.287 1_6 - 209 Ribosomal_L4 PF00573.17 192 0.00027 11.5 1.4 1 2 1.8e-05 0.00052 10.6 0.2 127 182 8 66 2 69 0.80 # 6186 # 6812 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_6 - 209 Ribosomal_L4 PF00573.17 192 0.00027 11.5 1.4 2 2 0.038 1.1 -0.3 0.1 62 76 132 148 96 199 0.70 # 6186 # 6812 # -1 # ID=1_6;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a713e5e9-ec8b-498c-ba8f-fc6d04ac6de4 # Target file: checkm_output/bins/pGCA_001021875.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001021875.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a713e5e9-ec8b-498c-ba8f-fc6d04ac6de4 checkm_output/bins/pGCA_001021875.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:37 2020 # [ok]