# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_15 - 571 cobW PF02492.14 178 0.00095 11.5 0.1 1 1 4.4e-05 0.0042 9.4 0.1 3 38 143 178 141 201 0.80 # 15661 # 17373 # -1 # ID=2_15;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.560 2_7 - 1203 CoA_binding_2 PF13380.1 116 0.00086 12.3 1.1 1 1 7e-05 0.0066 9.5 0.5 41 100 405 465 397 474 0.84 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_34 - 213 MipZ PF09140.6 261 1.8e-19 62.6 1.3 1 2 2.2e-12 1.1e-10 33.9 0.0 2 53 2 53 1 64 0.95 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 MipZ PF09140.6 261 1.8e-19 62.6 1.3 2 2 2.2e-10 1.1e-08 27.3 0.2 86 144 66 122 61 130 0.89 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_4 - 194 MipZ PF09140.6 261 2e-09 29.7 0.4 1 2 2e-07 9.5e-06 17.6 0.0 3 66 3 65 1 76 0.82 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_4 - 194 MipZ PF09140.6 261 2e-09 29.7 0.4 2 2 3.4e-05 0.0016 10.3 0.2 101 137 79 115 72 130 0.89 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_34 - 213 YhjQ PF06564.7 244 5.5e-11 35.0 0.3 1 2 3.8e-07 3.6e-05 16.0 0.0 9 41 8 40 1 55 0.89 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 YhjQ PF06564.7 244 5.5e-11 35.0 0.3 2 2 1.9e-07 1.8e-05 17.0 0.0 100 232 63 205 50 211 0.65 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_7 - 1203 UvrD_C_2 PF13538.1 104 2.4e-08 26.9 0.5 1 1 1.1e-09 1e-07 25.0 0.5 16 98 860 947 846 949 0.68 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_15 - 571 DUF87 PF01935.12 229 0.00018 14.2 0.0 1 1 3.4e-06 0.00032 13.3 0.0 33 68 150 185 145 246 0.86 # 15661 # 17373 # -1 # ID=2_15;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.560 2_7 - 1203 AAA_22 PF13401.1 131 1.3e-08 27.9 0.1 1 1 1.2e-09 1.2e-07 24.8 0.0 6 128 584 708 579 710 0.75 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_4 - 194 DUF1611 PF07755.6 301 0.00027 12.4 0.0 1 1 4.5e-06 0.00042 11.8 0.0 114 150 2 38 1 52 0.86 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_34 - 213 ATP_bind_1 PF03029.12 238 2.6e-05 16.7 0.4 1 2 5.5e-06 0.00052 12.4 0.0 6 36 11 41 4 46 0.91 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 ATP_bind_1 PF03029.12 238 2.6e-05 16.7 0.4 2 2 0.0095 0.9 1.8 0.0 81 101 67 89 59 92 0.75 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_32 - 398 DNA_methylase PF00145.12 335 8.3e-53 172.4 0.0 1 2 2.7e-30 2.6e-28 91.9 0.0 1 126 1 134 1 140 0.87 # 31490 # 32683 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.537 2_32 - 398 DNA_methylase PF00145.12 335 8.3e-53 172.4 0.0 2 2 1e-25 9.6e-24 76.9 0.0 131 334 167 369 153 370 0.73 # 31490 # 32683 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.537 2_34 - 213 SRP54 PF00448.17 196 4e-05 15.9 0.2 1 1 2.4e-06 0.00023 13.5 0.2 4 39 2 39 1 96 0.71 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_4 - 194 AAA_17 PF13207.1 121 0.00011 15.8 0.0 1 1 3.2e-06 0.00015 15.4 0.0 9 64 11 72 6 153 0.71 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_34 - 213 AAA_17 PF13207.1 121 0.00065 13.4 0.0 1 1 2.9e-05 0.0014 12.3 0.0 9 78 11 96 1 209 0.70 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 MobB PF03205.9 140 7.5e-06 18.5 0.2 1 2 1.1e-05 0.00053 12.5 0.1 3 36 2 36 1 49 0.82 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 MobB PF03205.9 140 7.5e-06 18.5 0.2 2 2 0.0053 0.25 3.9 0.0 44 75 84 119 68 133 0.76 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_4 - 194 MobB PF03205.9 140 0.00032 13.3 0.0 1 2 4.5e-05 0.0022 10.6 0.0 2 34 2 35 1 42 0.82 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_4 - 194 MobB PF03205.9 140 0.00032 13.3 0.0 2 2 0.061 2.9 0.4 0.0 57 91 89 121 82 163 0.74 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_34 - 213 LpxK PF02606.9 326 0.00017 13.4 0.4 1 1 2.7e-06 0.00026 12.8 0.1 37 71 2 35 1 87 0.90 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 ArsA_ATPase PF02374.10 305 2.3e-07 22.9 0.7 1 2 3.5e-08 1.7e-06 20.1 0.2 8 40 8 40 1 50 0.89 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 ArsA_ATPase PF02374.10 305 2.3e-07 22.9 0.7 2 2 0.029 1.4 0.7 0.0 220 243 61 84 54 89 0.67 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_4 - 194 ArsA_ATPase PF02374.10 305 3.1e-07 22.5 0.0 1 1 9.8e-09 4.6e-07 21.9 0.0 1 44 1 44 1 55 0.91 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_7 - 1203 PhoH PF02562.11 205 5.8e-07 21.7 0.2 1 2 5.6e-06 0.00054 12.1 0.1 6 34 567 597 564 626 0.83 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_7 - 1203 PhoH PF02562.11 205 5.8e-07 21.7 0.2 2 2 0.0002 0.019 7.0 0.0 121 163 669 712 667 753 0.76 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 1_28 - 605 Terminase_1 PF03354.10 477 2.5e-06 18.9 0.1 1 2 0.0013 0.12 3.4 0.2 60 139 151 225 143 400 0.70 # 19177 # 20991 # 1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.566 1_28 - 605 Terminase_1 PF03354.10 477 2.5e-06 18.9 0.1 2 2 1.9e-06 0.00018 12.8 0.0 408 468 504 569 497 578 0.77 # 19177 # 20991 # 1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.566 2_34 - 213 Methyltransf_24 PF13578.1 106 4.8e-06 20.3 0.1 1 2 4.5e-07 4.2e-05 17.2 0.0 9 79 16 88 10 105 0.76 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 Methyltransf_24 PF13578.1 106 4.8e-06 20.3 0.1 2 2 0.052 5 0.9 0.1 54 90 150 178 112 195 0.54 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_4 - 194 VirC1 PF07015.6 231 1.9e-11 36.2 0.0 1 1 9.7e-13 4.6e-11 35.0 0.0 4 132 3 125 1 133 0.83 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_34 - 213 VirC1 PF07015.6 231 3.8e-10 32.0 0.1 1 1 1e-11 5e-10 31.6 0.1 4 187 3 184 1 200 0.84 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 Fer4_NifH PF00142.13 273 7.5e-07 21.4 0.1 1 1 4.3e-08 2e-06 19.9 0.0 8 39 9 40 1 72 0.91 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_4 - 194 Fer4_NifH PF00142.13 273 0.00017 13.6 0.0 1 1 6e-06 0.00029 12.9 0.0 5 44 6 45 1 55 0.88 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_2 - 591 AAA_16 PF13191.1 185 0.0002 14.2 0.1 1 1 4.1e-05 0.0013 11.5 0.0 25 41 137 153 113 178 0.82 # 901 # 2673 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 2_34 - 213 AAA_16 PF13191.1 185 0.00039 13.3 0.1 1 1 3.5e-05 0.0011 11.8 0.1 33 81 10 78 1 185 0.47 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_7 - 1203 AAA_16 PF13191.1 185 0.00043 13.1 4.9 1 1 2.9e-05 0.00091 12.1 0.0 30 63 588 621 572 676 0.70 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 1_22 - 811 AAA_18 PF13238.1 129 9.9e-05 15.5 0.0 1 1 2e-05 0.00094 12.3 0.0 2 35 525 624 524 706 0.56 # 12329 # 14761 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_34 - 213 AAA_18 PF13238.1 129 0.00076 12.6 0.0 1 1 2.4e-05 0.0011 12.1 0.0 8 79 11 85 2 131 0.70 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_4 - 194 CbiA PF01656.18 195 6.8e-27 86.9 0.0 1 1 3.4e-28 1.6e-26 85.7 0.0 1 193 3 167 3 169 0.76 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_34 - 213 CbiA PF01656.18 195 3.7e-23 74.8 0.6 1 1 1.8e-24 8.6e-23 73.6 0.6 1 187 3 173 3 184 0.76 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_22 - 811 AAA_14 PF13173.1 128 0.00036 13.3 0.0 1 1 1.1e-05 0.0011 11.8 0.0 3 40 522 558 521 584 0.81 # 12329 # 14761 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_2 - 591 AAA_29 PF13555.1 62 2.4e-06 19.9 0.2 1 1 2.3e-07 1.1e-05 17.8 0.1 17 40 130 153 121 165 0.74 # 901 # 2673 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 1_22 - 811 AAA_29 PF13555.1 62 0.00082 11.8 0.0 1 1 4.1e-05 0.0019 10.6 0.0 24 40 522 538 511 542 0.83 # 12329 # 14761 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_7 - 1203 AAA PF00004.24 132 7.7e-05 15.8 0.1 1 1 5.5e-06 0.00053 13.1 0.0 4 23 588 607 586 688 0.73 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_34 - 213 MMR_HSR1 PF01926.18 116 5.2e-05 16.0 0.0 1 1 8.9e-07 8.4e-05 15.4 0.0 9 57 11 105 1 202 0.62 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_22 - 811 DUF258 PF03193.11 161 0.00067 11.7 0.0 1 1 1.5e-05 0.0014 10.6 0.0 35 58 521 544 498 592 0.85 # 12329 # 14761 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_12 - 579 TraG-D_C PF12696.2 128 5.6e-30 96.7 0.0 1 1 2e-31 9.5e-30 95.9 0.0 1 126 422 538 422 540 0.89 # 11794 # 13530 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_2 - 591 TraG-D_C PF12696.2 128 3.6e-10 32.6 0.0 1 1 1.5e-11 7.1e-10 31.7 0.0 4 128 390 514 388 514 0.82 # 901 # 2673 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 2_34 - 213 AAA_31 PF13614.1 157 5.5e-09 29.0 0.0 1 2 8.5e-07 4e-05 16.4 0.0 9 60 9 60 1 71 0.74 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 AAA_31 PF13614.1 157 5.5e-09 29.0 0.0 2 2 2.8e-05 0.0013 11.5 0.0 105 153 63 113 56 117 0.76 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_4 - 194 AAA_31 PF13614.1 157 6.6e-06 19.0 0.1 1 2 1.2e-05 0.00057 12.7 0.0 3 41 3 41 1 45 0.88 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_4 - 194 AAA_31 PF13614.1 157 6.6e-06 19.0 0.1 2 2 0.0057 0.27 4.0 0.0 122 155 81 113 80 115 0.89 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_7 - 1203 AAA_33 PF13671.1 143 0.025 7.3 7.3 1 2 0.022 2.1 1.1 0.2 85 112 407 434 394 468 0.75 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_7 - 1203 AAA_33 PF13671.1 143 0.025 7.3 7.3 2 2 0.00027 0.025 7.3 0.5 3 21 586 604 584 701 0.83 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_34 - 213 KTI12 PF08433.5 270 0.00018 13.6 0.0 1 2 5e-06 0.00048 12.2 0.0 11 56 11 56 1 86 0.69 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 KTI12 PF08433.5 270 0.00018 13.6 0.0 2 2 0.096 9.1 -1.9 0.0 103 128 138 163 133 183 0.68 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_7 - 1203 AAA_30 PF13604.1 196 9e-54 174.8 8.1 1 2 0.00013 0.013 7.9 1.0 99 139 399 439 358 495 0.77 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_7 - 1203 AAA_30 PF13604.1 196 9e-54 174.8 8.1 2 2 3.1e-54 3e-52 169.9 1.0 1 191 565 778 565 783 0.90 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 1_22 - 811 VirE PF05272.6 198 6.5e-75 243.8 0.1 1 1 9.7e-77 9.2e-75 243.3 0.1 1 198 469 668 469 668 0.93 # 12329 # 14761 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_22 - 811 ABC_tran PF00005.22 137 0.001 12.2 0.0 1 1 3e-05 0.0028 10.8 0.0 9 34 519 544 515 566 0.85 # 12329 # 14761 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_7 - 1203 AAA_19 PF13245.1 76 2e-11 36.4 1.0 1 2 2.6e-10 1.2e-08 27.5 1.1 9 74 581 639 572 641 0.76 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_7 - 1203 AAA_19 PF13245.1 76 2e-11 36.4 1.0 2 2 0.003 0.14 4.8 0.0 28 66 788 823 785 842 0.79 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_2 - 591 AAA_19 PF13245.1 76 0.00014 14.4 0.1 1 1 8.1e-06 0.00038 13.1 0.1 8 36 133 162 127 178 0.78 # 901 # 2673 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 2_15 - 571 AAA_10 PF12846.2 304 6.9e-61 199.1 0.0 1 1 2.6e-62 8.3e-61 198.8 0.0 1 304 140 496 140 496 0.92 # 15661 # 17373 # -1 # ID=2_15;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.560 2_34 - 213 AAA_10 PF12846.2 304 0.00041 12.6 0.0 1 1 1.4e-05 0.00044 12.5 0.0 11 41 11 41 2 206 0.85 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_2 - 591 AAA_10 PF12846.2 304 0.0015 10.8 1.0 1 1 0.00015 0.0049 9.1 0.1 4 19 139 154 136 195 0.91 # 901 # 2673 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 1_23 - 452 ResIII PF04851.10 184 2.9e-07 23.3 0.2 1 1 2.2e-08 2.1e-06 20.5 0.0 1 183 2 162 2 163 0.76 # 15269 # 16624 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 2_7 - 1203 Viral_helicase1 PF01443.13 234 1.5e-07 24.0 3.3 1 2 2e-05 0.0019 10.5 0.1 61 107 666 714 585 845 0.79 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_7 - 1203 Viral_helicase1 PF01443.13 234 1.5e-07 24.0 3.3 2 2 1.4e-05 0.0013 11.1 0.6 119 226 849 946 821 953 0.64 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 1_23 - 452 DEAD PF00270.24 169 2.1e-12 39.7 0.0 1 1 4.2e-14 4e-12 38.8 0.0 3 163 8 162 6 169 0.81 # 15269 # 16624 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 2_12 - 579 TrwB_AAD_bind PF10412.4 386 8.1e-10 30.6 0.0 1 1 3.8e-11 1.2e-09 30.0 0.0 104 381 267 554 248 557 0.74 # 11794 # 13530 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_2 - 591 TrwB_AAD_bind PF10412.4 386 5.3e-09 27.9 0.4 1 2 0.082 2.6 -0.7 0.0 15 33 136 154 130 158 0.84 # 901 # 2673 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 2_2 - 591 TrwB_AAD_bind PF10412.4 386 5.3e-09 27.9 0.4 2 2 6.3e-10 2e-08 26.0 0.1 165 372 306 519 204 529 0.72 # 901 # 2673 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 2_4 - 194 TrwB_AAD_bind PF10412.4 386 0.00066 11.1 0.0 1 1 2.6e-05 0.00082 10.8 0.0 21 52 7 38 1 49 0.86 # 3869 # 4450 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_7 - 1203 AAA_11 PF13086.1 236 6.3e-09 28.5 0.2 1 3 0.0002 0.019 7.3 0.0 2 68 566 625 565 639 0.76 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_7 - 1203 AAA_11 PF13086.1 236 6.3e-09 28.5 0.2 2 3 3e-07 2.9e-05 16.5 0.0 196 232 671 710 668 711 0.88 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_7 - 1203 AAA_11 PF13086.1 236 6.3e-09 28.5 0.2 3 3 0.044 4.1 -0.3 0.0 31 75 784 823 764 842 0.79 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 2_12 - 579 T4SS-DNA_transf PF02534.9 469 7.4e-23 73.6 0.0 1 1 3.5e-24 1.7e-22 72.4 0.0 47 441 165 555 123 557 0.81 # 11794 # 13530 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_2 - 591 T4SS-DNA_transf PF02534.9 469 5e-08 24.7 0.0 1 1 5.7e-09 2.7e-07 22.3 0.0 40 396 122 478 92 533 0.68 # 901 # 2673 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 2_34 - 213 ArgK PF03308.11 267 4.6e-05 15.1 2.2 1 2 7.4e-07 7.1e-05 14.5 0.1 38 68 10 40 2 45 0.91 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 ArgK PF03308.11 267 4.6e-05 15.1 2.2 2 2 0.017 1.6 0.2 0.2 192 231 139 178 76 211 0.63 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_34 - 213 GTP_EFTU PF00009.22 188 6.6e-05 15.2 0.1 1 1 7.4e-07 7e-05 15.1 0.1 14 99 12 106 1 191 0.76 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_7 - 1203 NACHT PF05729.7 166 0.0002 13.9 0.1 1 1 1.5e-05 0.00071 12.1 0.1 3 30 585 612 583 654 0.91 # 6090 # 9698 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.513 1_22 - 811 NACHT PF05729.7 166 0.00021 13.8 0.0 1 1 8.5e-06 0.0004 12.9 0.0 2 27 523 548 522 555 0.89 # 12329 # 14761 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_2 - 591 AAA_25 PF13481.1 194 1.2e-05 17.6 0.1 1 1 5.8e-07 2.8e-05 16.4 0.1 31 92 134 206 121 278 0.74 # 901 # 2673 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.466 2_34 - 213 AAA_25 PF13481.1 194 0.00021 13.6 0.5 1 1 2.8e-05 0.0013 10.9 0.5 42 83 10 41 8 94 0.63 # 34248 # 34886 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_23 - 452 SNF2_N PF00176.18 299 6.8e-28 90.1 0.1 1 1 1e-29 9.5e-28 89.6 0.1 33 271 27 270 8 301 0.81 # 15269 # 16624 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_22 - 811 AAA_5 PF07728.9 139 6e-05 15.6 0.0 1 1 1.3e-06 0.00012 14.7 0.0 2 48 524 571 523 596 0.88 # 12329 # 14761 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/68417ea7-e9c5-4d6f-8cfd-babf0aa7454b # Target file: checkm_output/bins/pGCA_001020985.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001020985.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/68417ea7-e9c5-4d6f-8cfd-babf0aa7454b checkm_output/bins/pGCA_001020985.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:39 2020 # [ok]