# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_5 - 646 Seryl_tRNA_N PF02403.17 108 0.044 8.3 20.1 1 3 4e-05 0.011 10.1 1.4 30 100 190 258 174 261 0.89 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 3_5 - 646 Seryl_tRNA_N PF02403.17 108 0.044 8.3 20.1 2 3 0.067 19 -0.3 0.7 35 56 361 382 354 415 0.51 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 3_5 - 646 Seryl_tRNA_N PF02403.17 108 0.044 8.3 20.1 3 3 9.1e-05 0.026 9.0 2.5 11 72 418 482 410 493 0.80 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 2_121 - 509 Terminase_6 PF03237.10 384 1.5e-17 57.7 0.0 1 1 6.4e-20 1.9e-17 57.5 0.0 4 382 85 484 82 486 0.84 # 74950 # 76476 # 1 # ID=2_121;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.660 1_78 - 318 IstB_IS21 PF01695.12 178 0.0017 12.2 0.3 1 2 4e-05 0.012 9.5 0.1 47 65 13 31 10 39 0.86 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_78 - 318 IstB_IS21 PF01695.12 178 0.0017 12.2 0.3 2 2 0.022 6.4 0.5 0.0 107 145 42 80 31 96 0.80 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 2_45 - 222 MipZ PF09140.6 261 1.3e-06 22.0 3.7 1 2 4.9e-06 0.00071 13.1 0.8 2 24 54 76 53 88 0.79 # 32749 # 33414 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 2_45 - 222 MipZ PF09140.6 261 1.3e-06 22.0 3.7 2 2 2.6e-05 0.0037 10.7 0.2 94 134 82 124 74 137 0.81 # 32749 # 33414 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 1_87 - 317 MipZ PF09140.6 261 1.6e-06 21.8 0.0 1 2 5.7e-07 8.3e-05 16.1 0.0 2 44 31 73 30 126 0.84 # 78090 # 79040 # -1 # ID=1_87;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.667 1_87 - 317 MipZ PF09140.6 261 1.6e-06 21.8 0.0 2 2 0.0033 0.47 3.8 0.0 73 114 142 183 131 229 0.79 # 78090 # 79040 # -1 # ID=1_87;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.667 1_87 - 317 YhjQ PF06564.7 244 6.1e-06 20.1 0.0 1 2 5e-05 0.014 9.1 0.0 10 41 38 69 30 104 0.91 # 78090 # 79040 # -1 # ID=1_87;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.667 1_87 - 317 YhjQ PF06564.7 244 6.1e-06 20.1 0.0 2 2 5.7e-05 0.016 8.9 0.0 60 139 106 189 91 198 0.69 # 78090 # 79040 # -1 # ID=1_87;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.667 2_60 - 175 SSB PF00436.20 104 1e-30 100.1 0.1 1 1 4.7e-33 1.4e-30 99.7 0.1 4 101 7 106 5 109 0.95 # 41019 # 41543 # 1 # ID=2_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.693 1_20 - 891 NB-ARC PF00931.17 287 0.0017 11.6 0.0 1 1 1.1e-05 0.0031 10.7 0.0 20 38 60 78 51 84 0.85 # 22061 # 24733 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.749 1_18 - 617 AAA_22 PF13401.1 131 0.00013 16.5 0.0 1 2 0.0021 0.12 6.9 0.1 7 30 46 69 40 208 0.81 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 AAA_22 PF13401.1 131 0.00013 16.5 0.0 2 2 0.0037 0.21 6.1 0.0 3 26 340 363 338 384 0.87 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_78 - 318 AAA_22 PF13401.1 131 0.00021 15.8 0.0 1 1 6e-06 0.00035 15.1 0.0 4 27 13 36 10 104 0.84 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_20 - 891 AAA_22 PF13401.1 131 0.00083 13.9 0.0 1 1 0.00011 0.0062 11.1 0.0 4 65 59 135 54 182 0.67 # 22061 # 24733 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.749 3_5 - 646 AAA_22 PF13401.1 131 0.0011 13.5 2.6 1 1 0.00027 0.015 9.8 1.9 5 46 26 69 21 415 0.93 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 2_45 - 222 AAA_22 PF13401.1 131 0.0022 12.5 0.0 1 1 6.1e-05 0.0035 11.9 0.0 14 59 63 108 61 139 0.88 # 32749 # 33414 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 1_87 - 317 ATP_bind_1 PF03029.12 238 0.00082 13.3 0.0 1 1 5.8e-06 0.0017 12.3 0.0 6 38 40 72 38 105 0.83 # 78090 # 79040 # -1 # ID=1_87;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.667 2_29 - 429 DNA_methylase PF00145.12 335 5.4e-32 105.6 0.0 1 2 2e-11 5.6e-09 29.9 0.0 2 85 6 88 5 93 0.93 # 23098 # 24384 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.698 2_29 - 429 DNA_methylase PF00145.12 335 5.4e-32 105.6 0.0 2 2 1.7e-24 4.8e-22 72.8 0.0 83 330 113 407 108 411 0.63 # 23098 # 24384 # 1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.698 1_18 - 617 AAA_17 PF13207.1 121 4.5e-07 25.1 0.2 1 2 2.9e-06 0.00021 16.5 0.2 1 77 45 129 45 325 0.70 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 AAA_17 PF13207.1 121 4.5e-07 25.1 0.2 2 2 0.012 0.83 4.9 0.0 2 58 344 415 344 488 0.57 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_78 - 318 AAA_17 PF13207.1 121 0.00018 16.8 0.5 1 1 7e-06 0.00051 15.3 0.4 2 17 16 31 15 47 0.94 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_20 - 891 AAA_17 PF13207.1 121 0.0021 13.3 0.0 1 1 0.00015 0.011 11.0 0.0 2 23 62 83 61 114 0.85 # 22061 # 24733 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.749 3_5 - 646 AAA_17 PF13207.1 121 0.0034 12.6 1.2 1 1 0.0013 0.09 8.0 0.0 3 18 29 44 28 97 0.86 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 1_87 - 317 LpxK PF02606.9 326 0.00044 13.6 0.0 1 1 2.3e-06 0.00067 13.0 0.0 40 71 33 64 13 66 0.87 # 78090 # 79040 # -1 # ID=1_87;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.667 3_9 - 499 Helicase_C PF00271.26 78 6.3e-25 81.3 0.1 1 1 8.6e-27 1.2e-24 80.4 0.1 3 78 328 403 326 403 0.97 # 11202 # 12698 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.727 3_2 - 900 Helicase_C PF00271.26 78 1.4e-05 19.4 0.2 1 1 2.1e-07 3e-05 18.3 0.2 12 77 373 449 368 450 0.85 # 1008 # 3707 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.710 1_87 - 317 ArsA_ATPase PF02374.10 305 8.8e-07 22.6 0.0 1 1 9.5e-09 1.4e-06 22.0 0.0 3 49 31 78 29 150 0.79 # 78090 # 79040 # -1 # ID=1_87;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.667 2_45 - 222 ArsA_ATPase PF02374.10 305 0.0026 11.2 0.4 1 1 4.2e-05 0.006 10.0 0.0 8 32 60 87 54 101 0.68 # 32749 # 33414 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 1_18 - 617 Zeta_toxin PF06414.7 201 2.3e-81 266.1 0.1 1 2 2.6e-49 3.8e-47 154.4 0.1 10 199 37 226 30 228 0.96 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 Zeta_toxin PF06414.7 201 2.3e-81 266.1 0.1 2 2 1.3e-35 1.9e-33 109.7 0.0 13 196 338 520 330 524 0.96 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_78 - 318 Zeta_toxin PF06414.7 201 1e-05 19.1 0.4 1 1 1.2e-06 0.00017 15.1 0.4 14 179 11 153 2 165 0.70 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 3_5 - 646 SMC_N PF02463.14 220 2.6e-05 17.9 0.4 1 2 8.6e-07 0.00025 14.7 0.0 17 56 18 55 13 75 0.82 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 3_5 - 646 SMC_N PF02463.14 220 2.6e-05 17.9 0.4 2 2 0.034 9.9 -0.3 0.4 159 196 341 380 331 401 0.79 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 1_87 - 317 Fer4_NifH PF00142.13 273 0.00044 13.9 0.0 1 1 2.5e-06 0.00071 13.2 0.0 9 85 39 113 32 121 0.82 # 78090 # 79040 # -1 # ID=1_87;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.667 1_18 - 617 AAA_16 PF13191.1 185 2.6e-08 28.4 4.3 1 2 8.8e-08 6.3e-06 20.7 0.1 18 103 37 119 30 211 0.69 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 AAA_16 PF13191.1 185 2.6e-08 28.4 4.3 2 2 0.0004 0.029 8.7 0.0 19 51 336 368 329 560 0.68 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_78 - 318 AAA_16 PF13191.1 185 0.00012 16.5 1.0 1 1 4.1e-06 0.0003 15.2 1.0 25 82 14 78 8 184 0.56 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_20 - 891 AAA_16 PF13191.1 185 0.00042 14.7 0.5 1 1 5.8e-06 0.00042 14.7 0.5 24 52 48 89 22 295 0.68 # 22061 # 24733 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.749 3_5 - 646 AAA_16 PF13191.1 185 0.00091 13.6 0.2 1 1 1.3e-05 0.00091 13.6 0.2 25 49 26 49 10 169 0.84 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 3_5 - 646 AAA_23 PF13476.1 202 3.1e-09 31.8 6.1 1 2 9.1e-11 1.3e-08 29.8 0.1 12 194 18 283 14 291 0.63 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 3_5 - 646 AAA_23 PF13476.1 202 3.1e-09 31.8 6.1 2 2 0.035 5 1.8 2.1 110 200 368 475 352 482 0.43 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 1_78 - 318 AAA_23 PF13476.1 202 0.0011 13.7 0.0 1 1 1.2e-05 0.0017 13.1 0.0 18 36 12 30 5 31 0.90 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_18 - 617 AAA_18 PF13238.1 129 5.1e-05 18.0 0.0 1 2 1.8e-05 0.0053 11.5 0.0 1 23 46 74 46 140 0.76 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 AAA_18 PF13238.1 129 5.1e-05 18.0 0.0 2 2 0.0032 0.93 4.2 0.0 1 25 344 376 344 430 0.67 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_87 - 317 CbiA PF01656.18 195 5e-20 66.1 0.0 1 1 5.3e-22 7.7e-20 65.5 0.0 2 121 33 194 32 195 0.73 # 78090 # 79040 # -1 # ID=1_87;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.667 2_45 - 222 CbiA PF01656.18 195 1.7e-14 48.0 2.1 1 2 1.6e-09 2.3e-07 24.8 1.0 2 25 56 79 55 88 0.86 # 32749 # 33414 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 2_45 - 222 CbiA PF01656.18 195 1.7e-14 48.0 2.1 2 2 6.7e-09 9.6e-07 22.8 0.0 95 164 87 156 75 170 0.77 # 32749 # 33414 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 3_8 - 68 CSD PF00313.17 66 5.4e-31 100.6 0.4 1 1 2e-33 5.7e-31 100.6 0.4 2 64 3 65 2 67 0.97 # 10646 # 10849 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 3_5 - 646 AAA_29 PF13555.1 62 2.8e-05 18.0 0.1 1 1 4.8e-07 6.9e-05 16.8 0.1 15 40 19 42 14 56 0.82 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 1_78 - 318 AAA_29 PF13555.1 62 0.0001 16.2 0.0 1 1 1.6e-06 0.00023 15.1 0.0 22 39 12 29 6 31 0.83 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_18 - 617 AAA PF00004.24 132 0.0011 13.5 0.0 1 2 0.0018 0.17 6.5 0.0 2 24 47 69 46 111 0.82 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 AAA PF00004.24 132 0.0011 13.5 0.0 2 2 0.0067 0.64 4.6 0.0 1 23 344 366 344 405 0.85 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_78 - 318 AAA PF00004.24 132 0.0015 13.2 1.6 1 2 0.00055 0.052 8.2 0.1 1 16 16 31 16 36 0.92 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_78 - 318 AAA PF00004.24 132 0.0015 13.2 1.6 2 2 0.0099 0.95 4.1 0.1 60 122 37 99 33 109 0.76 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 3_5 - 646 AAA PF00004.24 132 0.0073 10.9 2.0 1 2 0.0091 0.88 4.2 0.0 3 17 30 44 28 91 0.78 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 3_5 - 646 AAA PF00004.24 132 0.0073 10.9 2.0 2 2 0.018 1.8 3.2 0.0 81 114 193 226 177 239 0.85 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 1_78 - 318 DUF258 PF03193.11 161 0.00011 15.8 0.0 1 1 6e-07 0.00017 15.2 0.0 35 67 13 45 9 67 0.80 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_26 - 605 Asn_synthase PF00733.16 255 1.1e-24 81.7 0.0 1 1 5.3e-27 1.5e-24 81.2 0.0 2 253 209 524 208 526 0.90 # 26880 # 28694 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_87 - 317 AAA_31 PF13614.1 157 2.1e-05 18.9 0.0 1 1 3e-07 4.3e-05 17.9 0.0 10 84 39 107 30 127 0.78 # 78090 # 79040 # -1 # ID=1_87;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.667 2_45 - 222 AAA_31 PF13614.1 157 0.0011 13.4 0.4 1 2 0.00034 0.049 8.0 0.1 2 25 54 77 53 82 0.85 # 32749 # 33414 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 2_45 - 222 AAA_31 PF13614.1 157 0.0011 13.4 0.4 2 2 0.0059 0.85 3.9 0.1 120 153 89 123 75 125 0.77 # 32749 # 33414 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 1_78 - 318 AAA_33 PF13671.1 143 1.3e-19 64.9 0.2 1 1 1.9e-21 1.8e-19 64.4 0.2 1 138 15 144 15 149 0.90 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_18 - 617 AAA_33 PF13671.1 143 4.2e-11 37.3 0.6 1 2 3.6e-10 3.4e-08 27.9 0.1 1 109 45 161 45 177 0.85 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 AAA_33 PF13671.1 143 4.2e-11 37.3 0.6 2 2 0.00092 0.088 7.1 0.0 2 112 344 460 343 479 0.68 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_20 - 891 AAA_33 PF13671.1 143 0.00083 13.6 0.1 1 1 4.1e-05 0.0039 11.5 0.1 1 24 61 84 61 98 0.88 # 22061 # 24733 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.749 1_78 - 318 KTI12 PF08433.5 270 1.5e-06 22.0 0.0 1 1 2.1e-08 3.1e-06 21.0 0.0 3 128 15 133 10 162 0.88 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_18 - 617 KTI12 PF08433.5 270 0.00013 15.6 0.0 1 2 5.1e-06 0.00074 13.1 0.0 4 47 46 88 43 107 0.82 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 KTI12 PF08433.5 270 0.00013 15.6 0.0 2 2 0.079 11 -0.6 0.0 4 26 344 366 343 384 0.84 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 AAA_30 PF13604.1 196 4.9e-06 20.6 1.6 1 2 1.8e-06 0.00052 14.0 0.5 19 52 44 77 32 151 0.69 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 AAA_30 PF13604.1 196 4.9e-06 20.6 1.6 2 2 0.0015 0.44 4.5 0.0 15 51 338 374 334 380 0.83 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 3_8 - 68 OB_RNB PF08206.6 58 4.3e-05 17.4 0.9 1 1 1.7e-07 4.8e-05 17.2 0.9 7 24 12 29 4 63 0.73 # 10646 # 10849 # 1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_118 - 775 FtsK_SpoIIIE PF01580.13 205 4.3e-06 20.7 0.0 1 1 2.9e-08 8.5e-06 19.7 0.0 14 122 360 464 351 490 0.76 # 71516 # 73840 # 1 # ID=2_118;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.696 1_67 - 876 AAA_27 PF13514.1 1111 0.00091 11.3 7.5 1 1 5e-06 0.0015 10.7 7.5 782 872 756 846 743 863 0.90 # 60808 # 63435 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.754 1_78 - 318 6PF2K PF01591.13 223 0.001 12.5 0.0 1 2 0.0056 1.6 2.1 0.0 13 31 13 31 6 37 0.89 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_78 - 318 6PF2K PF01591.13 223 0.001 12.5 0.0 2 2 7.6e-05 0.022 8.2 0.0 100 130 79 109 67 121 0.84 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 2_81 - 73 ELFV_dehydrog PF00208.16 244 0.0018 12.2 0.0 1 1 6.6e-06 0.0019 12.2 0.0 98 148 11 64 1 69 0.79 # 50679 # 50897 # -1 # ID=2_81;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_78 - 318 ABC_tran PF00005.22 137 4.6e-05 18.1 0.0 1 1 6.2e-07 9e-05 17.2 0.0 10 29 12 31 9 35 0.88 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_18 - 617 ABC_tran PF00005.22 137 0.0013 13.4 0.0 1 2 0.00045 0.065 7.9 0.0 13 51 45 82 37 235 0.80 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 ABC_tran PF00005.22 137 0.0013 13.4 0.0 2 2 0.022 3.1 2.5 0.0 13 51 343 379 339 394 0.80 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_78 - 318 TIGR03263 TIGR03263 180 0.00044 14.0 0.0 1 1 2.3e-06 0.00067 13.4 0.0 2 21 14 33 13 43 0.86 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_18 - 617 AAA_19 PF13245.1 76 3e-05 18.1 9.3 1 2 2.9e-06 0.00028 15.0 2.0 6 36 37 72 32 112 0.70 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 AAA_19 PF13245.1 76 3e-05 18.1 9.3 2 2 0.0023 0.22 5.7 0.0 12 36 343 366 335 381 0.77 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 3_5 - 646 AAA_19 PF13245.1 76 0.00017 15.8 0.1 1 1 9.4e-06 0.0009 13.4 0.1 9 45 24 53 17 92 0.71 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 1_78 - 318 AAA_19 PF13245.1 76 0.0021 12.3 0.4 1 1 6.6e-05 0.0064 10.7 0.0 10 29 13 31 8 33 0.88 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 2_118 - 775 AAA_10 PF12846.2 304 2.6e-08 28.0 0.1 1 2 3.8e-06 0.00055 13.8 0.2 3 44 390 435 388 458 0.85 # 71516 # 73840 # 1 # ID=2_118;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.696 2_118 - 775 AAA_10 PF12846.2 304 2.6e-08 28.0 0.1 2 2 2e-05 0.0029 11.4 0.0 225 264 484 528 475 559 0.84 # 71516 # 73840 # 1 # ID=2_118;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.696 1_69 - 767 AAA_10 PF12846.2 304 8.5e-08 26.3 1.0 1 2 0.00099 0.14 5.9 0.3 7 39 375 407 372 411 0.83 # 63975 # 66275 # 1 # ID=1_69;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.713 1_69 - 767 AAA_10 PF12846.2 304 8.5e-08 26.3 1.0 2 2 1.2e-07 1.8e-05 18.7 0.0 201 275 431 521 423 546 0.69 # 63975 # 66275 # 1 # ID=1_69;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.713 3_2 - 900 ResIII PF04851.10 184 3e-15 50.9 0.0 1 1 1.2e-16 1.7e-14 48.4 0.0 8 183 13 211 5 212 0.75 # 1008 # 3707 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.710 3_9 - 499 ResIII PF04851.10 184 0.0034 11.6 0.0 1 1 6.6e-05 0.0095 10.2 0.0 33 74 114 164 108 180 0.81 # 11202 # 12698 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.727 1_18 - 617 DUF2075 PF09848.4 352 0.0013 12.1 0.0 1 2 5.6e-05 0.016 8.5 0.0 2 25 44 67 43 148 0.84 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 DUF2075 PF09848.4 352 0.0013 12.1 0.0 2 2 0.0074 2.1 1.5 0.0 3 18 343 358 341 382 0.78 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 3_9 - 499 DEAD PF00270.24 169 3.1e-42 138.3 0.0 1 2 9.7e-43 1.4e-40 132.9 0.0 2 167 94 260 93 262 0.94 # 11202 # 12698 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.727 3_9 - 499 DEAD PF00270.24 169 3.1e-42 138.3 0.0 2 2 0.007 1 3.2 0.0 58 103 318 366 313 380 0.76 # 11202 # 12698 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.727 3_2 - 900 DEAD PF00270.24 169 1.3e-07 25.6 0.0 1 1 3.7e-09 5.3e-07 23.7 0.0 15 133 34 183 25 213 0.64 # 1008 # 3707 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.710 2_118 - 775 DUF853 PF05872.7 504 0.00021 14.1 0.0 1 1 1.1e-06 0.00032 13.5 0.0 16 59 383 426 371 440 0.90 # 71516 # 73840 # 1 # ID=2_118;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.696 2_118 - 775 TrwB_AAD_bind PF10412.4 386 0.00096 12.2 0.0 1 2 9.4e-06 0.0027 10.7 0.0 15 54 388 427 378 435 0.90 # 71516 # 73840 # 1 # ID=2_118;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.696 2_118 - 775 TrwB_AAD_bind PF10412.4 386 0.00096 12.2 0.0 2 2 0.073 21 -2.1 0.0 257 312 502 556 468 559 0.73 # 71516 # 73840 # 1 # ID=2_118;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.696 2_60 - 175 tRNA_anti_2 PF13742.1 99 0.00014 16.1 0.0 1 1 6.4e-07 0.00018 15.7 0.0 51 82 54 84 12 106 0.88 # 41019 # 41543 # 1 # ID=2_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.693 1_18 - 617 ArgK PF03308.11 267 0.0071 9.5 4.4 1 2 3.2e-05 0.0092 9.1 0.6 26 62 40 76 16 77 0.85 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 ArgK PF03308.11 267 0.0071 9.5 4.4 2 2 0.011 3.2 0.8 0.1 179 248 86 153 79 162 0.75 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 2_45 - 222 GTP_EFTU PF00009.22 188 0.00011 16.1 0.0 1 1 1.4e-06 0.00041 14.2 0.0 64 135 77 153 56 168 0.80 # 32749 # 33414 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 2_60 - 175 tRNA_anti-codon PF01336.20 75 3.4e-07 24.5 0.0 1 1 2.2e-09 6.2e-07 23.6 0.0 25 72 51 106 30 108 0.78 # 41019 # 41543 # 1 # ID=2_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.693 1_78 - 318 AAA_24 PF13479.1 213 0.00042 14.3 0.0 1 1 2.3e-06 0.00066 13.7 0.0 6 33 16 43 12 58 0.84 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 1_20 - 891 NACHT PF05729.7 166 0.0022 12.1 0.1 1 2 7.1e-05 0.021 8.9 0.0 2 26 61 85 60 92 0.86 # 22061 # 24733 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.749 1_20 - 891 NACHT PF05729.7 166 0.0022 12.1 0.1 2 2 0.03 8.5 0.4 0.0 85 142 262 316 207 367 0.63 # 22061 # 24733 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.749 1_78 - 318 AAA_25 PF13481.1 194 9.2e-05 16.3 1.2 1 1 4.2e-06 0.00061 13.6 1.0 30 53 10 33 3 103 0.89 # 70053 # 71006 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.719 3_5 - 646 AAA_25 PF13481.1 194 0.0008 13.2 10.3 1 2 1.4e-05 0.002 11.9 0.0 36 106 28 94 24 125 0.72 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 3_5 - 646 AAA_25 PF13481.1 194 0.0008 13.2 10.3 2 2 0.00054 0.078 6.7 0.0 143 180 556 593 548 600 0.84 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 2_45 - 222 Rad51 PF08423.6 256 0.00061 13.1 0.0 1 1 4.1e-06 0.0012 12.2 0.0 49 93 64 107 43 114 0.87 # 32749 # 33414 # 1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.665 1_18 - 617 AAA_5 PF07728.9 139 0.00043 14.4 0.4 1 2 8.9e-05 0.013 9.7 0.1 2 31 46 75 45 84 0.80 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 1_18 - 617 AAA_5 PF07728.9 139 0.00043 14.4 0.4 2 2 0.019 2.8 2.1 0.0 3 23 345 365 343 377 0.81 # 19774 # 21624 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.739 3_5 - 646 AAA_5 PF07728.9 139 0.0011 13.1 0.3 1 1 5.5e-05 0.0079 10.3 0.0 3 27 29 53 27 83 0.83 # 5972 # 7909 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.665 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/97db8e94-e6a7-4fa1-b3ca-f732b0626059 # Target file: checkm_output/bins/pGCA_001013905.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001013905.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/97db8e94-e6a7-4fa1-b3ca-f732b0626059 checkm_output/bins/pGCA_001013905.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:38 2020 # [ok]