# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_47 - 344 Mg_chelatase PF01078.16 207 5.1e-08 24.5 0.0 1 1 1.3e-09 7.9e-08 23.9 0.0 1 51 150 200 150 248 0.87 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_4 - 599 UPF0020 PF01170.13 180 5.8e-07 21.5 0.0 1 1 5.4e-08 3.4e-06 19.0 0.0 30 119 152 255 142 274 0.63 # 3379 # 5175 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.552 1_57 - 254 Torsin PF06309.6 127 0.00013 14.1 0.0 1 1 7e-06 0.00043 12.4 0.0 58 86 15 43 7 65 0.88 # 44739 # 45500 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.488 1_57 - 254 IstB_IS21 PF01695.12 178 1.3e-05 16.9 0.0 1 1 6e-07 1.8e-05 16.4 0.0 44 77 7 40 1 77 0.92 # 44739 # 45500 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.488 1_47 - 344 IstB_IS21 PF01695.12 178 0.0001 14.0 1.0 1 2 0.019 0.59 1.7 0.1 135 164 128 157 120 161 0.87 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_47 - 344 IstB_IS21 PF01695.12 178 0.0001 14.0 1.0 2 2 4.3e-05 0.0013 10.3 0.1 44 62 168 186 161 192 0.88 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_15 - 217 MipZ PF09140.6 261 1e-19 62.8 0.5 1 1 1.7e-19 1e-17 56.2 0.5 2 147 4 129 3 140 0.85 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_55 - 202 SSB PF00436.20 104 1.1e-39 126.8 0.1 1 1 2.4e-41 1.5e-39 126.3 0.1 1 100 5 107 5 111 0.96 # 43528 # 44133 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.592 1_47 - 344 AAA_22 PF13401.1 131 0.00016 14.1 0.0 1 1 4.5e-06 0.00028 13.3 0.0 3 31 170 198 165 241 0.81 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_47 - 344 ATP_bind_1 PF03029.12 238 7.3e-05 14.6 0.0 1 1 1.9e-06 0.00012 13.9 0.0 1 27 176 201 176 205 0.85 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_15 - 217 SRP54 PF00448.17 196 1.2e-10 33.4 0.2 1 1 2.7e-12 1.7e-10 32.9 0.2 4 98 4 95 2 127 0.82 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_15 - 217 AAA_17 PF13207.1 121 1.7e-05 17.9 0.0 1 1 7.8e-07 2.4e-05 17.4 0.0 2 77 5 90 4 201 0.72 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_47 - 344 AAA_17 PF13207.1 121 2.8e-05 17.2 0.0 1 1 2.2e-06 6.8e-05 15.9 0.0 2 19 174 191 173 255 0.85 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_57 - 254 MobB PF03205.9 140 0.00024 13.1 0.0 1 1 1.6e-05 0.0005 12.0 0.0 7 33 17 43 13 53 0.89 # 44739 # 45500 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.488 1_15 - 217 MobB PF03205.9 140 0.00043 12.2 0.5 1 1 2.8e-05 0.00087 11.3 0.5 2 42 4 43 3 90 0.83 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_15 - 217 ArsA_ATPase PF02374.10 305 2.1e-08 25.7 1.1 1 2 2e-09 6.1e-08 24.2 0.1 3 65 4 71 2 74 0.82 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_15 - 217 ArsA_ATPase PF02374.10 305 2.1e-08 25.7 1.1 2 2 0.041 1.3 0.2 0.1 124 135 78 89 68 91 0.80 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_57 - 254 ArsA_ATPase PF02374.10 305 4.1e-05 14.9 0.0 1 1 2e-06 6.3e-05 14.3 0.0 6 42 15 51 11 75 0.84 # 44739 # 45500 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.488 1_47 - 344 T2SE PF00437.15 272 2.1e-43 140.3 0.0 1 1 4.1e-45 2.6e-43 140.1 0.0 7 269 24 317 19 320 0.96 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_47 - 344 Zeta_toxin PF06414.7 201 0.00025 12.4 0.0 1 1 6.2e-06 0.00038 11.8 0.0 14 49 169 205 158 226 0.86 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_15 - 217 VirC1 PF07015.6 231 8.1e-12 36.9 0.0 1 1 2.2e-13 1.4e-11 36.1 0.0 4 198 5 199 2 212 0.73 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_15 - 217 Fer4_NifH PF00142.13 273 4.9e-05 14.8 0.5 1 1 1.6e-06 9.7e-05 13.8 0.2 8 40 11 43 3 56 0.86 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_47 - 344 AAA_18 PF13238.1 129 2.8e-05 16.7 0.0 1 1 8e-07 5e-05 15.9 0.0 1 34 174 207 174 225 0.74 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_15 - 217 CbiA PF01656.18 195 2.3e-22 71.6 0.0 1 1 9.7e-24 3e-22 71.2 0.0 1 145 5 131 5 163 0.85 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_57 - 254 CbiA PF01656.18 195 1.1e-09 30.2 0.0 1 1 6.1e-11 1.9e-09 29.4 0.0 3 45 14 56 13 151 0.73 # 44739 # 45500 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.488 1_47 - 344 AAA_29 PF13555.1 62 0.00032 12.5 0.0 1 1 1.6e-05 0.00096 11.0 0.0 9 39 160 187 156 195 0.78 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_4 - 599 N6_Mtase PF02384.11 311 2.1e-11 35.6 0.0 1 1 7.1e-13 4.4e-11 34.6 0.0 20 188 120 302 108 308 0.75 # 3379 # 5175 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.552 1_51 - 553 TraG-D_C PF12696.2 128 2.1e-28 91.0 0.0 1 1 5.6e-30 3.5e-28 90.3 0.0 2 127 311 433 310 434 0.88 # 38938 # 40596 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.575 1_15 - 217 AAA_31 PF13614.1 157 3e-10 32.5 0.1 1 2 3.6e-09 2.2e-07 23.1 0.0 2 44 4 46 3 69 0.88 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_15 - 217 AAA_31 PF13614.1 157 3e-10 32.5 0.1 2 2 0.00025 0.016 7.4 0.0 110 133 73 96 58 111 0.79 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_15 - 217 KTI12 PF08433.5 270 0.00017 13.0 0.0 1 1 8.9e-06 0.00028 12.4 0.0 11 53 13 55 1 91 0.65 # 11831 # 12481 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_47 - 344 KTI12 PF08433.5 270 0.00053 11.4 0.0 1 1 2.9e-05 0.00091 10.7 0.0 4 34 174 204 173 220 0.83 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_4 - 599 Methyltransf_26 PF13659.1 117 5.9e-21 67.0 0.2 1 2 0.041 2.5 0.4 0.0 25 48 75 98 29 140 0.76 # 3379 # 5175 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.552 1_4 - 599 Methyltransf_26 PF13659.1 117 5.9e-21 67.0 0.2 2 2 1.1e-21 6.6e-20 63.6 0.0 3 116 153 298 151 299 0.85 # 3379 # 5175 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.552 1_47 - 344 FtsK_SpoIIIE PF01580.13 205 1.8e-06 19.8 0.0 1 1 4.7e-08 2.9e-06 19.1 0.0 28 59 161 192 134 194 0.78 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_44 - 263 AAA_27 PF13514.1 1111 2.4e-05 14.3 0.5 1 1 4.7e-07 2.9e-05 14.1 0.5 418 520 3 109 1 128 0.87 # 31726 # 32514 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.551 1_47 - 344 ABC_tran PF00005.22 137 0.00053 12.5 0.0 1 1 1.6e-05 0.00097 11.7 0.0 6 54 166 212 162 279 0.80 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_4 - 599 Eco57I PF07669.6 106 1.4e-16 53.1 0.0 1 1 5.4e-18 3.3e-16 51.8 0.0 3 102 243 347 241 350 0.94 # 3379 # 5175 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.552 1_47 - 344 AAA_19 PF13245.1 76 0.00017 13.6 0.0 1 1 8.2e-06 0.00051 12.1 0.0 4 25 168 186 165 199 0.77 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_40 - 851 AAA_10 PF12846.2 304 8.4e-19 60.3 0.0 1 1 8.8e-20 1.8e-18 59.2 0.0 2 297 426 713 425 717 0.81 # 26751 # 29303 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.575 1_47 - 344 AAA_10 PF12846.2 304 8.2e-05 14.3 0.0 1 1 1e-05 0.00021 13.0 0.0 2 34 172 204 171 212 0.85 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_57 - 254 AAA_10 PF12846.2 304 0.0001 14.0 0.0 1 1 5.4e-06 0.00011 13.9 0.0 2 65 11 79 10 251 0.76 # 44739 # 45500 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.488 1_47 - 344 Viral_helicase1 PF01443.13 234 0.00066 11.4 0.0 1 1 2.1e-05 0.0013 10.4 0.0 1 21 174 194 174 228 0.78 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_51 - 553 TrwB_AAD_bind PF10412.4 386 1.7e-24 78.3 0.0 1 2 0.00015 0.0091 6.8 0.0 20 128 48 163 39 172 0.69 # 38938 # 40596 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.575 1_51 - 553 TrwB_AAD_bind PF10412.4 386 1.7e-24 78.3 0.0 2 2 1.4e-23 8.9e-22 69.4 0.0 245 378 311 445 263 454 0.89 # 38938 # 40596 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.575 1_51 - 553 T4SS-DNA_transf PF02534.9 469 3.5e-76 248.8 0.0 1 2 2.6e-77 1.6e-75 246.6 0.0 31 456 25 469 3 473 0.82 # 38938 # 40596 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.575 1_51 - 553 T4SS-DNA_transf PF02534.9 469 3.5e-76 248.8 0.0 2 2 0.032 2 -1.0 0.0 86 123 488 526 484 536 0.72 # 38938 # 40596 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.575 1_47 - 344 Pox_A32 PF04665.7 241 0.00012 13.7 0.0 1 1 2.9e-06 0.00018 13.0 0.0 14 67 172 222 162 235 0.76 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_8 - 68 S1 PF00575.18 74 0.0003 13.1 0.2 1 2 1e-05 0.00064 12.1 0.1 43 70 6 33 3 36 0.87 # 6975 # 7178 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_8 - 68 S1 PF00575.18 74 0.0003 13.1 0.2 2 2 7.2e-05 0.0045 9.4 0.1 49 70 12 33 11 61 0.65 # 6975 # 7178 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_47 - 344 AAA_24 PF13479.1 213 0.00023 13.0 0.0 1 1 8.5e-06 0.00053 11.8 0.0 4 23 172 191 169 199 0.88 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_36 - 178 TIGR00922 TIGR00922 172 0.00027 12.7 0.0 1 1 5.5e-06 0.00034 12.4 0.0 33 91 27 87 10 107 0.80 # 24500 # 25033 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_47 - 344 AAA_28 PF13521.1 163 2.6e-05 16.5 0.1 1 2 3.6e-06 0.00022 13.4 0.0 1 30 173 207 173 221 0.71 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_47 - 344 AAA_28 PF13521.1 163 2.6e-05 16.5 0.1 2 2 0.097 6 -1.0 0.0 80 98 307 326 307 339 0.68 # 34668 # 35699 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8619cf4b-b427-47e4-b632-6e21ae9ad7ee # Target file: checkm_output/bins/pGCA_000988395.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000988395.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8619cf4b-b427-47e4-b632-6e21ae9ad7ee checkm_output/bins/pGCA_000988395.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:38 2020 # [ok]