# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 263 Eno-Rase_NADH_b PF12242.3 78 6.9e-07 19.2 0.1 1 1 1.2e-07 1.7e-06 17.9 0.1 38 72 15 47 3 53 0.74 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 DUF1776 PF08643.5 299 6.7e-07 18.8 0.0 1 1 6.9e-08 9.6e-07 18.2 0.0 83 200 85 203 44 221 0.81 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 3HCDH_N PF02737.13 180 2.6e-05 14.0 0.0 1 1 3.5e-06 4.9e-05 13.1 0.0 2 72 19 94 18 124 0.71 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 NmrA PF05368.8 233 5.4e-05 12.6 0.2 1 1 6.7e-06 9.3e-05 11.8 0.2 1 54 19 91 19 139 0.72 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 F420_oxidored PF03807.12 96 7.4e-06 16.6 0.2 1 1 1.6e-06 2.2e-05 15.1 0.2 7 64 25 81 18 82 0.82 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 adh_short PF00106.20 167 4.6e-24 75.3 0.0 1 1 4.1e-25 5.7e-24 75.0 0.0 2 166 18 189 17 190 0.89 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 Polysacc_synt_2 PF02719.10 294 9.8e-06 14.7 0.1 1 1 1e-06 1.4e-05 14.2 0.1 1 76 19 88 19 147 0.79 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 KR PF08659.5 181 3e-12 36.7 0.0 1 1 4.3e-13 6e-12 35.7 0.0 3 161 19 183 18 193 0.77 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 RmlD_sub_bind PF04321.12 287 0.0001 11.4 0.1 1 1 1.4e-05 0.0002 10.4 0.1 2 48 18 86 17 137 0.77 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 NAD_binding_10 PF13460.1 183 2e-06 18.1 0.0 1 1 4.5e-07 6.2e-06 16.4 0.0 1 27 19 45 19 90 0.67 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 adh_short_C2 PF13561.1 241 1.5e-29 93.5 0.2 1 1 1.3e-30 1.8e-29 93.2 0.2 6 239 26 261 23 262 0.91 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_2 - 263 Epimerase PF01370.16 236 1.9e-10 30.7 0.2 1 1 5.9e-11 8.3e-10 28.5 0.2 1 65 19 94 19 210 0.65 # 915 # 1703 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.318 1_12 - 187 TIGR00460 TIGR00460 315 4.5e-18 55.1 0.0 1 1 3.7e-19 5.2e-18 54.9 0.0 71 188 58 175 28 183 0.88 # 8829 # 9389 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2b33fbf3-9c2f-4c8e-8104-a8704e25d3a5 # Target file: checkm_output/bins/pGCA_000978785.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000978785.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2b33fbf3-9c2f-4c8e-8104-a8704e25d3a5 checkm_output/bins/pGCA_000978785.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:34 2020 # [ok]