# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_59 - 223 AAA_22 PF13401.1 131 4.7e-05 16.1 0.0 1 2 3.6e-06 0.00028 13.6 0.0 4 25 33 54 30 105 0.85 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_22 PF13401.1 131 4.7e-05 16.1 0.0 2 2 0.061 4.8 -0.1 0.0 36 108 155 184 125 206 0.54 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_66 - 143 tRNA_anti-like PF12869.2 144 0.00037 12.6 4.3 1 1 8e-06 0.00063 11.8 4.3 1 84 1 107 1 126 0.63 # 52917 # 53345 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.210 1_59 - 223 AAA_15 PF13175.1 415 2.7e-06 19.1 4.5 1 2 0.00038 0.03 5.8 1.9 25 56 29 76 4 132 0.66 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_15 PF13175.1 415 2.7e-06 19.1 4.5 2 2 1.3e-06 9.9e-05 14.0 0.2 322 411 125 201 113 204 0.79 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_17 PF13207.1 121 0.00048 13.5 0.8 1 1 1.6e-05 0.0013 12.1 0.8 4 18 38 52 36 168 0.80 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_21 PF13304.1 303 8.8e-14 44.6 3.4 1 1 8.6e-13 2.2e-11 36.7 3.4 3 301 37 204 35 206 0.72 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_41 - 178 AAA_21 PF13304.1 303 1.5e-12 40.6 0.4 1 2 6.7e-13 1.7e-11 37.1 0.0 234 297 14 73 3 75 0.91 # 33209 # 33742 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_41 - 178 AAA_21 PF13304.1 303 1.5e-12 40.6 0.4 2 2 0.046 1.2 1.5 0.5 96 140 112 156 85 176 0.44 # 33209 # 33742 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_31 - 68 AAA_21 PF13304.1 303 7.4e-08 25.2 0.0 1 1 3.3e-09 8.5e-08 25.0 0.0 257 299 3 45 1 49 0.93 # 25560 # 25763 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.240 1_59 - 223 Miro PF08477.8 119 3.6e-05 16.8 0.0 1 1 8.5e-07 6.6e-05 16.0 0.0 3 44 37 77 36 118 0.78 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 T2SE PF00437.15 272 0.00082 10.8 0.3 1 1 1.8e-05 0.0014 10.1 0.3 115 149 20 54 4 66 0.77 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 SMC_N PF02463.14 220 2.9e-08 25.7 0.8 1 2 5e-05 0.0039 8.9 0.2 25 42 34 51 21 56 0.85 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 SMC_N PF02463.14 220 2.9e-08 25.7 0.8 2 2 4.5e-07 3.5e-05 15.6 0.0 130 211 135 214 63 219 0.79 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_16 PF13191.1 185 1.9e-05 17.2 0.0 1 1 3.5e-07 2.7e-05 16.7 0.0 23 52 32 62 21 212 0.82 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_18 PF13238.1 129 0.00021 14.2 0.4 1 2 2.6e-05 0.0021 11.0 0.2 3 23 38 68 37 88 0.66 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_18 PF13238.1 129 0.00021 14.2 0.4 2 2 0.047 3.6 0.5 0.0 32 92 159 211 131 219 0.66 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_13 PF13166.1 712 4e-05 14.7 0.7 1 2 0.0015 0.12 3.3 0.1 21 54 38 65 27 95 0.77 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_13 PF13166.1 712 4e-05 14.7 0.7 2 2 1.2e-05 0.00095 10.2 0.1 525 576 157 207 148 218 0.83 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_14 PF13173.1 128 0.00029 13.3 0.0 1 2 0.00014 0.011 8.2 0.0 3 21 34 52 32 58 0.83 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_14 PF13173.1 128 0.00029 13.3 0.0 2 2 0.0076 0.59 2.6 0.0 85 114 57 86 52 96 0.86 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_29 PF13555.1 62 2.3e-06 19.7 0.5 1 1 6.4e-08 5e-06 18.6 0.5 19 40 30 50 15 62 0.85 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA PF00004.24 132 0.00029 13.6 0.3 1 1 4.3e-05 0.0033 10.2 0.4 3 110 38 200 36 206 0.64 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 DUF258 PF03193.11 161 2.2e-05 16.3 0.3 1 1 4.8e-07 3.7e-05 15.5 0.3 28 65 25 63 5 70 0.74 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_33 PF13671.1 143 0.00076 11.9 0.4 1 1 2.3e-05 0.0018 10.7 0.3 4 18 38 52 35 98 0.90 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 ABC_tran PF00005.22 137 3.1e-37 120.5 0.0 1 1 1.1e-38 4.2e-37 120.1 0.0 1 136 23 169 23 170 0.89 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_41 - 178 ABC_tran PF00005.22 137 2.2e-12 40.0 0.0 1 1 1.5e-13 5.7e-12 38.7 0.0 90 137 2 45 1 45 0.89 # 33209 # 33742 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.288 1_59 - 223 AAA_19 PF13245.1 76 0.00016 14.0 0.2 1 2 0.006 0.47 2.9 0.0 18 35 14 30 13 35 0.82 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_19 PF13245.1 76 0.00016 14.0 0.2 2 2 7.4e-05 0.0058 9.0 0.0 13 32 36 54 28 63 0.83 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_10 PF12846.2 304 4.8e-05 15.4 0.1 1 2 3.5e-05 0.0014 10.6 0.2 6 21 38 53 35 66 0.84 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_10 PF12846.2 304 4.8e-05 15.4 0.1 2 2 0.0084 0.33 2.8 0.0 216 264 155 203 69 208 0.88 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_31 - 68 AAA_10 PF12846.2 304 0.00021 13.3 0.0 1 1 5.9e-06 0.00023 13.2 0.0 219 266 2 48 1 54 0.95 # 25560 # 25763 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.240 1_59 - 223 SbcCD_C PF13558.1 90 4e-05 16.1 0.0 1 1 3.8e-06 0.0003 13.3 0.0 61 88 157 184 120 186 0.75 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 NACHT PF05729.7 166 0.00087 11.5 0.2 1 1 2.5e-05 0.002 10.4 0.1 4 21 37 54 34 63 0.83 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 1_59 - 223 AAA_25 PF13481.1 194 0.00018 13.5 0.1 1 1 4.2e-06 0.00033 12.6 0.1 31 51 31 51 20 69 0.86 # 47966 # 48634 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.275 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7f56f9b3-e264-455c-81fd-497dcb48a8da # Target file: checkm_output/bins/pGCA_000967115.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000967115.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7f56f9b3-e264-455c-81fd-497dcb48a8da checkm_output/bins/pGCA_000967115.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:28 2020 # [ok]