# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 1358 RNA_pol_Rpb2_1 PF04563.10 203 1.3e-27 86.1 0.0 1 1 1.8e-28 2.4e-27 85.2 0.0 2 203 27 514 26 514 0.97 # 8892 # 12965 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_9 - 232 Ribosomal_L1 PF00687.16 220 2.4e-50 160.9 0.0 1 1 2.1e-51 2.8e-50 160.7 0.0 13 220 24 221 2 221 0.89 # 6837 # 7532 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_5 - 398 ATP_bind_1 PF03029.12 238 0.00011 11.7 0.3 1 2 0.0018 0.023 4.2 0.1 2 33 18 48 17 66 0.88 # 4007 # 5200 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_5 - 398 ATP_bind_1 PF03029.12 238 0.00011 11.7 0.3 2 2 0.00072 0.0094 5.5 0.0 93 191 77 160 61 205 0.64 # 4007 # 5200 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_8 - 144 Ribosomal_L11_N PF03946.9 60 2.2e-34 106.8 0.1 1 1 3e-35 3.9e-34 106.0 0.1 1 60 8 67 8 67 0.99 # 6406 # 6837 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_11 - 122 TIGR00855 TIGR00855 125 6.6e-46 145.6 18.9 1 1 5.6e-47 7.3e-46 145.4 18.9 1 125 1 121 1 121 0.95 # 8306 # 8671 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.505 1_5 - 398 Miro PF08477.8 119 2.3e-05 15.0 0.0 1 1 3.4e-06 4.5e-05 14.0 0.0 2 87 15 112 14 139 0.73 # 4007 # 5200 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_13 - 1170 RNA_pol_Rpb1_4 PF05000.12 108 9.8e-24 73.3 0.6 1 1 1.5e-24 2e-23 72.3 0.6 2 107 674 763 673 764 0.83 # 13030 # 16539 # 1 # ID=1_13;partial=01;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_12 - 1358 RNA_pol_Rpb2_7 PF04560.15 82 7.2e-35 109.3 0.0 1 1 1.3e-35 1.7e-34 108.1 0.0 1 81 1281 1356 1281 1357 0.98 # 8892 # 12965 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_3 - 157 Ribosomal_S7 PF00177.16 148 1.2e-66 212.9 1.8 1 1 9.9e-68 1.3e-66 212.8 1.8 1 148 1 149 1 149 0.99 # 1324 # 1794 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 1_12 - 1358 RNA_pol_Rpb2_45 PF10385.4 66 8.4e-26 79.7 0.5 1 1 3.8e-26 4.9e-25 77.3 0.4 1 66 596 661 596 661 1.00 # 8892 # 12965 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_13 - 1170 RNA_pol_Rpb1_2 PF00623.15 166 8.9e-55 175.1 0.0 1 1 2.7e-54 3.5e-53 170.0 0.0 1 166 344 486 344 486 0.95 # 13030 # 16539 # 1 # ID=1_13;partial=01;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_5 - 398 TIGR03594 TIGR03594 432 4.5e-05 12.2 0.0 1 1 9.9e-06 6.4e-05 11.7 0.0 171 321 8 163 1 201 0.76 # 4007 # 5200 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_4 - 716 TIGR03594 TIGR03594 432 4.7e-05 12.2 0.0 1 1 2.6e-05 0.00017 10.3 0.0 249 329 100 175 56 202 0.70 # 1825 # 3972 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_13 - 1170 RNA_pol_Rpb1_5 PF04998.12 277 2.5e-59 190.7 0.1 1 1 7.3e-60 4.7e-59 189.8 0.1 1 171 766 1025 766 1067 0.91 # 13030 # 16539 # 1 # ID=1_13;partial=01;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_1 - 214 RNA_pol_Rpb1_5 PF04998.12 277 1.3e-22 70.3 0.1 1 1 2.5e-23 1.6e-22 70.0 0.1 152 276 13 135 6 136 0.97 # 1 # 642 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.586 1_10 - 167 Ribosomal_L10 PF00466.15 100 1.8e-29 91.7 0.2 1 1 2e-30 2.5e-29 91.3 0.2 3 100 5 101 3 101 0.97 # 7731 # 8231 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_5 - 398 MMR_HSR1 PF01926.18 116 3.6e-08 23.4 0.0 1 1 1.3e-08 8.7e-08 22.2 0.0 2 114 15 134 14 137 0.68 # 4007 # 5200 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_4 - 716 MMR_HSR1 PF01926.18 116 1.8e-06 18.0 0.0 1 1 5.5e-07 3.5e-06 17.0 0.0 4 116 15 143 12 143 0.76 # 1825 # 3972 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_7 - 160 KOW PF00467.24 32 8.6e-12 34.6 0.1 1 1 1.4e-12 1.8e-11 33.5 0.1 1 31 108 138 108 143 0.91 # 5808 # 6287 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_13 - 1170 RNA_pol_Rpb1_3 PF04983.13 158 4.2e-33 104.3 0.0 1 1 1e-33 1.3e-32 102.7 0.0 1 157 489 643 489 644 0.97 # 13030 # 16539 # 1 # ID=1_13;partial=01;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_8 - 144 Ribosomal_L11 PF00298.14 69 9.2e-31 96.0 0.8 1 1 1.1e-31 1.4e-30 95.4 0.8 1 69 72 140 72 140 0.99 # 6406 # 6837 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_12 - 1358 RNA_pol_Rpb2_2 PF04561.9 190 4e-29 91.4 0.0 1 3 1.1e-11 1.5e-10 30.8 0.0 2 72 156 227 155 249 0.83 # 8892 # 12965 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_12 - 1358 RNA_pol_Rpb2_2 PF04561.9 190 4e-29 91.4 0.0 2 3 1.6e-19 2e-18 56.5 0.0 95 190 360 459 345 459 0.94 # 8892 # 12965 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_12 - 1358 RNA_pol_Rpb2_2 PF04561.9 190 4e-29 91.4 0.0 3 3 0.047 0.62 -0.6 0.0 84 128 1143 1186 1110 1195 0.75 # 8892 # 12965 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_12 - 1358 RNA_pol_Rpb2_3 PF04565.11 68 4.2e-33 103.1 0.0 1 1 7.5e-34 9.7e-33 101.9 0.0 1 68 518 587 518 587 0.98 # 8892 # 12965 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_4 - 716 GTP_EFTU_D2 PF03144.20 74 1.7e-20 63.1 0.7 1 1 7e-21 4.6e-20 61.7 0.7 1 74 340 407 340 407 0.98 # 1825 # 3972 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_5 - 398 GTP_EFTU_D2 PF03144.20 74 5.4e-20 61.4 4.5 1 1 2e-20 1.3e-19 60.2 4.5 1 73 228 296 228 297 0.96 # 4007 # 5200 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_12 - 1358 RNA_pol_Rpb2_6 PF00562.23 386 2.6e-164 536.5 0.0 1 2 2.7e-05 0.00036 9.3 0.0 1 33 667 699 667 705 0.88 # 8892 # 12965 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_12 - 1358 RNA_pol_Rpb2_6 PF00562.23 386 2.6e-164 536.5 0.0 2 2 6.2e-162 8.1e-161 524.9 0.1 1 386 720 1279 720 1279 0.99 # 8892 # 12965 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_2 - 124 Ribosom_S12_S23 PF00164.20 122 3.2e-57 181.3 1.2 1 1 2.7e-58 3.5e-57 181.2 1.2 2 122 3 123 2 123 0.99 # 842 # 1213 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_4 - 716 GTP_EFTU PF00009.22 188 8.1e-65 207.8 0.0 1 1 2.6e-65 1.7e-64 206.7 0.0 2 187 9 287 8 288 0.96 # 1825 # 3972 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_5 - 398 GTP_EFTU PF00009.22 188 1.1e-61 197.5 0.1 1 1 2.4e-62 1.5e-61 197.1 0.1 1 187 10 204 10 205 0.96 # 4007 # 5200 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_13 - 1170 RNA_pol_Rpb1_1 PF04997.7 337 4.4e-100 325.1 0.0 1 1 9.9e-101 1.3e-99 323.6 0.0 2 337 15 342 14 342 0.95 # 13030 # 16539 # 1 # ID=1_13;partial=01;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_4 - 716 EFG_IV PF03764.13 120 6e-42 132.1 0.1 1 1 8.6e-43 1.1e-41 131.2 0.1 1 119 495 620 495 621 0.97 # 1825 # 3972 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_7 - 160 TIGR00922 TIGR00922 172 2.9e-62 199.2 0.2 1 1 2.5e-63 3.2e-62 199.1 0.2 17 171 3 158 1 159 0.96 # 5808 # 6287 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3fbb79ed-1504-4b4f-bfe4-314c18ec466b # Target file: checkm_output/bins/pGCA_000963835.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000963835.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3fbb79ed-1504-4b4f-bfe4-314c18ec466b checkm_output/bins/pGCA_000963835.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:27 2020 # [ok]