# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 270 IstB_IS21 PF01695.12 178 0.00015 14.0 0.1 1 2 2.2e-05 0.0021 10.3 0.0 56 83 25 52 9 55 0.89 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_8 - 270 IstB_IS21 PF01695.12 178 0.00015 14.0 0.1 2 2 0.014 1.2 1.2 0.0 72 127 64 120 57 125 0.72 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_8 - 270 MipZ PF09140.6 261 1.3e-12 40.1 0.1 1 1 2.6e-13 1.2e-11 36.9 0.1 3 142 18 172 16 183 0.68 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_43 - 209 MipZ PF09140.6 261 1.8e-12 39.6 0.5 1 2 1.5e-11 6.7e-10 31.2 0.1 4 135 4 115 1 130 0.77 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_43 - 209 MipZ PF09140.6 261 1.8e-12 39.6 0.5 2 2 0.045 2.1 0.1 0.0 212 232 170 190 137 202 0.68 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_8 - 270 CoaE PF01121.15 180 0.0003 13.0 0.0 1 2 1.5e-05 0.0014 10.9 0.0 21 73 98 150 92 155 0.91 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_8 - 270 CoaE PF01121.15 180 0.0003 13.0 0.0 2 2 0.097 8.9 -1.6 0.0 42 59 204 221 198 232 0.77 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_32 - 992 UvrD_C_2 PF13538.1 104 2.1e-12 39.9 0.1 1 1 1.5e-13 1.4e-11 37.3 0.0 3 103 812 917 810 918 0.76 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_33 - 525 DUF87 PF01935.12 229 1.3e-05 17.8 0.0 1 1 4.3e-07 2e-05 17.3 0.0 23 73 140 187 129 315 0.82 # 26769 # 28343 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_18 - 890 DUF87 PF01935.12 229 0.0018 10.9 2.4 1 1 4.9e-05 0.0022 10.6 0.2 19 44 517 542 515 544 0.91 # 12583 # 15252 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.595 1_18 - 890 AAA_22 PF13401.1 131 0.00073 12.5 0.0 1 1 8.1e-05 0.0037 10.2 0.0 4 31 521 548 516 640 0.63 # 12583 # 15252 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.595 1_32 - 992 AAA_22 PF13401.1 131 0.0036 10.2 3.2 1 1 0.00053 0.024 7.6 0.2 66 125 548 611 499 617 0.74 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_43 - 209 SRP54 PF00448.17 196 1.2e-06 20.8 0.2 1 1 2.8e-08 2.5e-06 19.8 0.2 11 155 11 149 2 175 0.62 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_6 - 396 AAA_17 PF13207.1 121 1.9e-05 18.3 2.1 1 1 3.3e-06 0.00015 15.4 2.1 2 112 37 162 36 303 0.75 # 3787 # 4974 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_8 - 270 AAA_17 PF13207.1 121 0.00011 15.8 0.1 1 1 6.2e-06 0.00028 14.5 0.1 9 64 26 86 25 144 0.64 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_8 - 270 MobB PF03205.9 140 3.2e-05 16.5 0.0 1 1 6.7e-07 6.2e-05 15.5 0.0 6 41 20 56 15 86 0.86 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_8 - 270 ArsA_ATPase PF02374.10 305 1.1e-09 30.4 0.1 1 1 1.7e-10 7.9e-09 27.7 0.1 9 73 24 87 15 141 0.73 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_43 - 209 ArsA_ATPase PF02374.10 305 3.2e-08 25.7 0.2 1 1 1.1e-09 5.3e-08 25.0 0.2 5 42 5 41 1 48 0.86 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_32 - 992 PhoH PF02562.11 205 1.4e-08 26.9 4.1 1 2 1e-06 9.2e-05 14.5 0.3 4 47 485 529 483 535 0.87 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_32 - 992 PhoH PF02562.11 205 1.4e-08 26.9 4.1 2 2 3.4e-06 0.00031 12.8 0.3 121 182 576 635 570 656 0.69 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_26 - 341 T2SE PF00437.15 272 3.2e-70 228.8 0.0 1 1 4e-72 3.7e-70 228.6 0.0 4 269 13 323 10 326 0.96 # 20129 # 21151 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_6 - 396 Zeta_toxin PF06414.7 201 4.3e-65 211.3 0.4 1 1 7.2e-67 6.6e-65 210.7 0.4 2 200 22 217 21 218 0.98 # 3787 # 4974 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 2_4 - 352 Phe_tRNA-synt_N PF02912.13 73 0.0001 14.9 10.5 1 2 4.1e-06 0.00037 13.0 0.1 9 65 27 81 20 88 0.84 # 3665 # 4720 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.688 2_4 - 352 Phe_tRNA-synt_N PF02912.13 73 0.0001 14.9 10.5 2 2 0.00066 0.061 5.9 1.5 47 70 89 112 82 113 0.86 # 3665 # 4720 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.688 1_43 - 209 VirC1 PF07015.6 231 5e-10 31.6 0.1 1 1 6.5e-12 6e-10 31.3 0.1 4 183 3 177 1 199 0.80 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_43 - 209 Fer4_NifH PF00142.13 273 1e-06 20.9 0.0 1 1 2.3e-08 2.2e-06 19.8 0.0 4 42 5 42 3 53 0.89 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_6 - 396 AAA_16 PF13191.1 185 4.5e-05 16.3 0.1 1 1 4e-06 0.00018 14.3 0.0 14 71 23 77 17 110 0.65 # 3787 # 4974 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_32 - 992 AAA_16 PF13191.1 185 0.016 7.9 9.1 1 1 0.00014 0.0064 9.3 1.1 16 77 494 553 490 775 0.85 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_18 - 890 AAA_23 PF13476.1 202 0.00017 14.8 0.1 1 1 5.3e-06 0.00049 13.2 0.0 20 39 522 541 509 544 0.88 # 12583 # 15252 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.595 1_6 - 396 AAA_18 PF13238.1 129 2e-05 17.7 0.0 1 2 9.8e-06 0.00045 13.3 0.0 1 82 37 121 37 153 0.67 # 3787 # 4974 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_6 - 396 AAA_18 PF13238.1 129 2e-05 17.7 0.0 2 2 0.04 1.9 1.7 0.0 15 62 261 306 258 343 0.82 # 3787 # 4974 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_8 - 270 AAA_18 PF13238.1 129 0.00088 12.4 0.0 1 1 4.4e-05 0.002 11.2 0.0 8 43 26 67 25 148 0.69 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 2_4 - 352 AAA_13 PF13166.1 712 1.7e-07 22.8 17.5 1 3 0.073 6.7 -2.3 0.0 29 44 40 55 36 62 0.83 # 3665 # 4720 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.688 2_4 - 352 AAA_13 PF13166.1 712 1.7e-07 22.8 17.5 2 3 1.9e-09 1.7e-07 22.8 17.5 285 470 68 248 63 255 0.83 # 3665 # 4720 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.688 2_4 - 352 AAA_13 PF13166.1 712 1.7e-07 22.8 17.5 3 3 0.011 0.98 0.4 0.5 102 173 243 311 231 342 0.41 # 3665 # 4720 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.688 1_8 - 270 CbiA PF01656.18 195 1.5e-28 92.3 0.0 1 1 6.9e-30 2.1e-28 91.8 0.0 2 175 19 211 18 227 0.79 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_43 - 209 CbiA PF01656.18 195 2.4e-25 81.8 0.3 1 1 1.7e-26 5.1e-25 80.8 0.3 2 193 4 176 3 178 0.78 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_40 - 166 CbiA PF01656.18 195 0.00013 14.2 0.1 1 1 7.9e-06 0.00024 13.3 0.1 118 167 24 73 22 102 0.89 # 31768 # 32265 # 1 # ID=1_40;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_18 - 890 AAA_29 PF13555.1 62 9.3e-06 18.0 0.6 1 2 3.6e-06 0.00033 13.0 0.1 15 45 514 543 508 546 0.79 # 12583 # 15252 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.595 1_18 - 890 AAA_29 PF13555.1 62 9.3e-06 18.0 0.6 2 2 0.0068 0.62 2.5 0.1 4 17 663 676 661 683 0.75 # 12583 # 15252 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.595 14_1 - 246 NAD_binding_11 PF14833.1 122 5.9e-06 19.2 3.7 1 5 0.0037 0.34 3.8 0.0 26 50 14 38 13 50 0.82 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 14_1 - 246 NAD_binding_11 PF14833.1 122 5.9e-06 19.2 3.7 2 5 0.014 1.3 2.0 0.0 26 50 48 72 46 82 0.82 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 14_1 - 246 NAD_binding_11 PF14833.1 122 5.9e-06 19.2 3.7 3 5 0.016 1.5 1.8 0.0 26 53 82 108 80 135 0.68 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 14_1 - 246 NAD_binding_11 PF14833.1 122 5.9e-06 19.2 3.7 4 5 0.027 2.5 1.0 0.0 26 49 184 207 181 217 0.80 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 14_1 - 246 NAD_binding_11 PF14833.1 122 5.9e-06 19.2 3.7 5 5 0.0089 0.82 2.6 0.0 26 48 218 240 216 244 0.91 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 1_33 - 525 TraG-D_C PF12696.2 128 5e-22 70.9 0.0 1 1 8.5e-24 7.8e-22 70.3 0.0 1 127 368 490 368 491 0.90 # 26769 # 28343 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_8 - 270 AAA_31 PF13614.1 157 2.2e-09 30.2 0.0 1 1 3.5e-10 1.6e-08 27.4 0.0 9 152 24 162 17 167 0.75 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_43 - 209 AAA_31 PF13614.1 157 1.8e-08 27.2 0.0 1 1 2.3e-09 1e-07 24.8 0.0 7 40 7 39 2 44 0.87 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_6 - 396 AAA_33 PF13671.1 143 1e-07 24.7 0.8 1 2 1.4e-08 1.3e-06 21.2 0.1 2 123 37 165 36 183 0.79 # 3787 # 4974 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_6 - 396 AAA_33 PF13671.1 143 1e-07 24.7 0.8 2 2 0.014 1.3 1.7 0.1 67 96 248 280 206 309 0.76 # 3787 # 4974 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.620 1_32 - 992 AAA_30 PF13604.1 196 5.2e-55 178.8 8.4 1 1 1.7e-56 1.6e-54 177.2 8.4 2 193 486 674 485 677 0.97 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_33 - 525 FtsK_SpoIIIE PF01580.13 205 1.9e-07 23.5 0.0 1 2 1.7e-08 1.5e-06 20.5 0.0 17 80 119 178 96 185 0.73 # 26769 # 28343 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_33 - 525 FtsK_SpoIIIE PF01580.13 205 1.9e-07 23.5 0.0 2 2 0.027 2.5 0.3 0.0 145 174 296 362 258 386 0.70 # 26769 # 28343 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.608 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 1 15 0.036 0.47 3.1 0.0 22 51 25 55 22 60 0.77 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 2 15 0.062 0.82 2.3 0.0 22 50 58 88 57 98 0.72 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 3 15 0.053 0.69 2.6 0.0 22 52 92 123 90 131 0.76 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 4 15 0.05 0.65 2.7 0.0 22 50 125 155 121 166 0.73 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 5 15 0.014 0.18 4.4 0.0 22 52 159 191 154 200 0.78 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 6 15 0.018 0.24 4.1 0.0 22 52 193 225 192 233 0.78 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 7 15 0.032 0.42 3.3 0.0 22 52 227 258 226 266 0.76 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 8 15 0.056 0.73 2.5 0.0 22 50 260 290 259 301 0.72 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 9 15 0.019 0.25 4.0 0.0 22 52 294 326 290 333 0.81 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 10 15 0.029 0.38 3.4 0.0 22 51 328 359 323 369 0.74 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 11 15 0.014 0.19 4.4 0.0 22 52 362 394 358 403 0.78 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 12 15 0.029 0.38 3.4 0.0 22 52 396 427 392 435 0.77 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 13 15 0.052 0.68 2.6 0.0 22 50 429 459 426 470 0.73 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 14 15 0.015 0.19 4.4 0.0 22 52 463 495 460 504 0.78 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 6_1 - 566 RBD PF02196.10 71 6.3e-17 54.0 15.4 15 15 0.016 0.21 4.3 0.0 22 52 497 529 496 538 0.77 # 3 # 1700 # 1 # ID=6_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 9_1 - 348 RBD PF02196.10 71 7.6e-14 44.1 6.1 1 10 0.0078 0.1 5.2 0.0 22 52 18 50 15 59 0.78 # 2 # 1045 # 1 # ID=9_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.696 9_1 - 348 RBD PF02196.10 71 7.6e-14 44.1 6.1 2 10 0.017 0.22 4.2 0.0 22 51 52 83 50 93 0.73 # 2 # 1045 # 1 # ID=9_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.696 9_1 - 348 RBD PF02196.10 71 7.6e-14 44.1 6.1 3 10 0.016 0.21 4.2 0.0 22 51 86 117 84 127 0.72 # 2 # 1045 # 1 # ID=9_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.696 9_1 - 348 RBD PF02196.10 71 7.6e-14 44.1 6.1 4 10 0.0089 0.12 5.1 0.0 22 52 120 152 117 160 0.79 # 2 # 1045 # 1 # ID=9_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.696 9_1 - 348 RBD PF02196.10 71 7.6e-14 44.1 6.1 5 10 0.016 0.2 4.3 0.0 22 51 154 185 151 195 0.73 # 2 # 1045 # 1 # ID=9_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.696 9_1 - 348 RBD PF02196.10 71 7.6e-14 44.1 6.1 6 10 0.018 0.23 4.1 0.0 22 50 188 218 185 228 0.74 # 2 # 1045 # 1 # ID=9_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.696 9_1 - 348 RBD PF02196.10 71 7.6e-14 44.1 6.1 7 10 0.016 0.2 4.3 0.0 22 51 222 253 219 263 0.73 # 2 # 1045 # 1 # ID=9_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.696 9_1 - 348 RBD PF02196.10 71 7.6e-14 44.1 6.1 8 10 0.016 0.21 4.2 0.0 22 51 256 287 253 297 0.73 # 2 # 1045 # 1 # ID=9_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.696 9_1 - 348 RBD PF02196.10 71 7.6e-14 44.1 6.1 9 10 0.016 0.2 4.3 0.0 22 51 290 321 286 331 0.74 # 2 # 1045 # 1 # ID=9_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.696 9_1 - 348 RBD PF02196.10 71 7.6e-14 44.1 6.1 10 10 0.074 0.98 2.1 0.0 22 40 324 342 323 346 0.83 # 2 # 1045 # 1 # ID=9_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.696 11_1 - 321 RBD PF02196.10 71 4.2e-13 41.7 5.1 1 9 0.017 0.22 4.2 0.0 22 51 25 55 22 61 0.77 # 3 # 965 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 11_1 - 321 RBD PF02196.10 71 4.2e-13 41.7 5.1 2 9 0.014 0.18 4.4 0.0 22 51 58 89 54 99 0.74 # 3 # 965 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 11_1 - 321 RBD PF02196.10 71 4.2e-13 41.7 5.1 3 9 0.015 0.2 4.3 0.0 22 51 92 123 90 133 0.73 # 3 # 965 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 11_1 - 321 RBD PF02196.10 71 4.2e-13 41.7 5.1 4 9 0.03 0.4 3.4 0.0 22 50 126 156 125 166 0.72 # 3 # 965 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 11_1 - 321 RBD PF02196.10 71 4.2e-13 41.7 5.1 5 9 0.0076 0.1 5.3 0.0 22 52 160 192 159 201 0.77 # 3 # 965 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 11_1 - 321 RBD PF02196.10 71 4.2e-13 41.7 5.1 6 9 0.0067 0.088 5.4 0.0 22 52 194 226 190 235 0.78 # 3 # 965 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 11_1 - 321 RBD PF02196.10 71 4.2e-13 41.7 5.1 7 9 0.014 0.18 4.4 0.0 22 51 228 259 225 269 0.73 # 3 # 965 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 11_1 - 321 RBD PF02196.10 71 4.2e-13 41.7 5.1 8 9 0.007 0.092 5.4 0.0 22 52 262 294 259 303 0.78 # 3 # 965 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 11_1 - 321 RBD PF02196.10 71 4.2e-13 41.7 5.1 9 9 0.062 0.82 2.3 0.0 22 40 296 314 293 318 0.85 # 3 # 965 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 13_1 - 247 RBD PF02196.10 71 5.6e-12 38.1 2.8 1 7 0.0055 0.072 5.7 0.0 22 52 18 50 15 58 0.79 # 2 # 742 # -1 # ID=13_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 13_1 - 247 RBD PF02196.10 71 5.6e-12 38.1 2.8 2 7 0.0099 0.13 4.9 0.0 22 51 52 83 49 93 0.74 # 2 # 742 # -1 # ID=13_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 13_1 - 247 RBD PF02196.10 71 5.6e-12 38.1 2.8 3 7 0.0046 0.06 6.0 0.0 22 52 86 118 82 127 0.78 # 2 # 742 # -1 # ID=13_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 13_1 - 247 RBD PF02196.10 71 5.6e-12 38.1 2.8 4 7 0.0048 0.063 5.9 0.0 22 52 120 152 117 161 0.78 # 2 # 742 # -1 # ID=13_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 13_1 - 247 RBD PF02196.10 71 5.6e-12 38.1 2.8 5 7 0.0096 0.13 4.9 0.0 22 51 154 185 151 195 0.73 # 2 # 742 # -1 # ID=13_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 13_1 - 247 RBD PF02196.10 71 5.6e-12 38.1 2.8 6 7 0.0045 0.059 6.0 0.0 22 52 188 220 183 229 0.78 # 2 # 742 # -1 # ID=13_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 13_1 - 247 RBD PF02196.10 71 5.6e-12 38.1 2.8 7 7 0.045 0.59 2.8 0.0 22 40 222 240 220 245 0.84 # 2 # 742 # -1 # ID=13_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.699 14_1 - 246 RBD PF02196.10 71 1.3e-10 33.7 3.5 1 7 0.01 0.13 4.9 0.0 22 51 7 38 5 48 0.72 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 14_1 - 246 RBD PF02196.10 71 1.3e-10 33.7 3.5 2 7 0.037 0.48 3.1 0.1 22 50 41 71 38 82 0.72 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 14_1 - 246 RBD PF02196.10 71 1.3e-10 33.7 3.5 3 7 0.011 0.14 4.8 0.0 22 51 75 106 71 115 0.75 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 14_1 - 246 RBD PF02196.10 71 1.3e-10 33.7 3.5 4 7 0.0057 0.074 5.7 0.0 22 52 109 141 107 149 0.79 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 14_1 - 246 RBD PF02196.10 71 1.3e-10 33.7 3.5 5 7 0.0052 0.068 5.8 0.0 22 52 143 175 142 184 0.77 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 14_1 - 246 RBD PF02196.10 71 1.3e-10 33.7 3.5 6 7 0.02 0.26 3.9 0.0 22 44 177 199 176 218 0.73 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 14_1 - 246 RBD PF02196.10 71 1.3e-10 33.7 3.5 7 7 0.032 0.42 3.3 0.0 22 41 211 230 207 240 0.85 # 2 # 739 # -1 # ID=14_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.702 17_1 - 87 RBD PF02196.10 71 0.00011 14.7 0.0 1 2 0.00067 0.0088 8.7 0.0 22 52 18 50 14 59 0.78 # 2 # 262 # 1 # ID=17_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 17_1 - 87 RBD PF02196.10 71 0.00011 14.7 0.0 2 2 0.0066 0.087 5.5 0.0 22 41 52 71 51 84 0.83 # 2 # 262 # 1 # ID=17_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.697 18_1 - 86 RBD PF02196.10 71 0.00021 13.9 0.0 1 2 0.0014 0.018 7.6 0.0 22 52 17 49 13 58 0.74 # 2 # 259 # -1 # ID=18_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 18_1 - 86 RBD PF02196.10 71 0.00021 13.9 0.0 2 2 0.0062 0.081 5.6 0.0 22 41 51 70 49 83 0.84 # 2 # 259 # -1 # ID=18_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.674 1_32 - 992 AAA_19 PF13245.1 76 2.2e-08 26.6 7.6 1 2 1.3e-08 5.9e-07 22.0 0.4 2 75 493 564 493 565 0.84 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_32 - 992 AAA_19 PF13245.1 76 2.2e-08 26.6 7.6 2 2 0.00052 0.024 7.3 0.0 30 63 682 719 676 734 0.73 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_43 - 209 AAA_19 PF13245.1 76 0.0003 13.3 2.2 1 1 1.4e-05 0.00063 12.3 2.1 15 46 6 33 3 130 0.90 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_18 - 890 AAA_10 PF12846.2 304 4.9e-19 61.6 0.0 1 1 6.6e-20 2e-18 59.6 0.0 2 304 522 803 521 803 0.85 # 12583 # 15252 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.595 1_33 - 525 AAA_10 PF12846.2 304 1.4e-10 33.9 0.2 1 2 3.5e-09 1.1e-07 24.3 0.0 1 43 140 182 140 266 0.85 # 26769 # 28343 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_33 - 525 AAA_10 PF12846.2 304 1.4e-10 33.9 0.2 2 2 0.00049 0.015 7.5 0.0 214 300 348 447 319 451 0.74 # 26769 # 28343 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_8 - 270 AAA_10 PF12846.2 304 9.8e-05 14.6 0.0 1 2 4.1e-05 0.0013 11.0 0.0 11 43 26 59 24 84 0.85 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_8 - 270 AAA_10 PF12846.2 304 9.8e-05 14.6 0.0 2 2 0.03 0.91 1.6 0.0 23 100 122 205 117 261 0.65 # 7243 # 8052 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_32 - 992 Viral_helicase1 PF01443.13 234 5.7e-12 38.4 0.6 1 2 2.1e-06 0.00019 13.8 0.1 4 151 508 662 506 703 0.72 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_32 - 992 Viral_helicase1 PF01443.13 234 5.7e-12 38.4 0.6 2 2 3.9e-09 3.6e-07 22.7 0.1 181 234 871 919 827 919 0.80 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_32 - 992 DUF2075 PF09848.4 352 0.00072 11.3 2.1 1 2 2.4e-05 0.0022 9.7 0.6 4 129 505 613 502 700 0.65 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_32 - 992 DUF2075 PF09848.4 352 0.00072 11.3 2.1 2 2 0.029 2.7 -0.4 0.0 324 349 893 918 870 921 0.63 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_33 - 525 DEAD PF00270.24 169 0.00073 11.8 0.0 1 1 1.2e-05 0.0011 11.2 0.0 8 50 134 174 132 291 0.88 # 26769 # 28343 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_33 - 525 TrwB_AAD_bind PF10412.4 386 1.5e-126 414.8 0.0 1 1 1.9e-128 1.8e-126 414.6 0.0 2 386 127 510 126 510 0.96 # 26769 # 28343 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_32 - 992 AAA_11 PF13086.1 236 0.00029 13.2 3.2 1 1 3.9e-05 0.0036 9.6 3.1 2 133 486 647 485 733 0.50 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_33 - 525 T4SS-DNA_transf PF02534.9 469 1.2e-21 69.5 0.0 1 2 0.077 7.1 -2.2 0.0 47 84 143 182 100 185 0.80 # 26769 # 28343 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_33 - 525 T4SS-DNA_transf PF02534.9 469 1.2e-21 69.5 0.0 2 2 3e-23 2.8e-21 68.3 0.0 220 447 288 512 219 520 0.85 # 26769 # 28343 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_43 - 209 AAA_24 PF13479.1 213 6.3e-06 18.7 0.0 1 1 1e-07 9.6e-06 18.1 0.0 7 77 5 87 2 90 0.77 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_43 - 209 AAA_25 PF13481.1 194 5.6e-05 15.4 0.1 1 1 2.1e-06 9.5e-05 14.6 0.1 36 78 4 35 2 85 0.82 # 34032 # 34658 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.665 1_18 - 890 AAA_25 PF13481.1 194 0.00012 14.3 0.0 1 1 1.2e-05 0.00055 12.1 0.0 27 76 517 565 497 632 0.70 # 12583 # 15252 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.595 1_32 - 992 Herpes_Helicase PF02689.9 819 0.00026 11.6 0.0 1 2 0.029 2.6 -1.7 0.0 174 210 553 589 539 595 0.74 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 1_32 - 992 Herpes_Helicase PF02689.9 819 0.00026 11.6 0.0 2 2 9.8e-06 0.0009 9.8 0.0 741 785 872 917 848 924 0.84 # 23780 # 26755 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.644 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5061ed2b-6888-4f17-b358-2ba4a3e3aac7 # Target file: checkm_output/bins/pGCA_000961375.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000961375.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5061ed2b-6888-4f17-b358-2ba4a3e3aac7 checkm_output/bins/pGCA_000961375.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:24 2020 # [ok]