# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_76 - 154 Thymidylate_kin PF02223.12 186 3.2e-07 22.7 0.1 1 2 2.9e-06 0.00028 13.2 0.0 1 25 23 47 23 64 0.84 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_76 - 154 Thymidylate_kin PF02223.12 186 3.2e-07 22.7 0.1 2 2 8.4e-05 0.0082 8.4 0.0 110 180 76 141 45 147 0.76 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_33 - 597 Terminase_6 PF03237.10 384 6.2e-07 21.3 0.1 1 2 0.0009 0.088 4.3 0.0 2 51 140 190 139 232 0.78 # 28122 # 29912 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.364 1_33 - 597 Terminase_6 PF03237.10 384 6.2e-07 21.3 0.1 2 2 5.7e-07 5.5e-05 14.9 0.1 186 257 346 416 300 448 0.78 # 28122 # 29912 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.364 1_55 - 323 SSB PF00436.20 104 0.00044 13.0 0.3 1 1 2.4e-05 0.0023 10.7 0.3 2 55 11 58 10 115 0.83 # 44125 # 45093 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_92 - 196 AAA_22 PF13401.1 131 6.6e-05 15.9 0.1 1 1 1.4e-06 0.00013 15.0 0.1 42 123 33 114 2 116 0.64 # 76119 # 76706 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.316 1_76 - 154 AAA_17 PF13207.1 121 0.00014 15.6 0.1 1 1 1.8e-06 0.00018 15.2 0.1 1 78 20 108 20 150 0.58 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_59 - 345 Miro PF08477.8 119 0.00042 13.7 0.1 1 1 1.8e-05 0.0017 11.7 0.0 3 25 23 45 22 133 0.74 # 46442 # 47476 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_7 - 93 Arf PF00025.16 175 5.3e-05 15.4 0.9 1 1 6.7e-07 6.5e-05 15.1 0.9 94 137 31 74 26 89 0.85 # 2655 # 2933 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.301 1_8 - 407 MCM PF00493.18 331 0.00048 11.8 2.4 1 2 4.1e-05 0.0039 8.8 0.1 244 281 84 121 40 136 0.80 # 2985 # 4205 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.283 1_8 - 407 MCM PF00493.18 331 0.00048 11.8 2.4 2 2 0.0026 0.25 2.9 0.3 180 218 252 292 239 330 0.74 # 2985 # 4205 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.283 1_33 - 597 Terminase_1 PF03354.10 477 1e-77 254.3 3.9 1 1 1.4e-79 1.4e-77 254.0 3.9 1 470 112 574 112 581 0.93 # 28122 # 29912 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.364 1_76 - 154 Zeta_toxin PF06414.7 201 0.00027 12.9 0.0 1 2 1.9e-05 0.0019 10.2 0.0 10 46 12 48 4 110 0.78 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_76 - 154 Zeta_toxin PF06414.7 201 0.00027 12.9 0.0 2 2 0.017 1.6 0.6 0.0 96 111 130 145 128 151 0.79 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_85 - 183 AAA_18 PF13238.1 129 7e-07 22.5 0.1 1 1 3.8e-08 1.8e-06 21.2 0.1 3 119 5 139 4 154 0.70 # 71621 # 72169 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.375 1_76 - 154 AAA_18 PF13238.1 129 8.3e-06 19.0 0.2 1 1 1.1e-05 0.00055 13.1 0.2 1 86 21 118 21 139 0.60 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_7 - 93 AAA_13 PF13166.1 712 8.1e-05 14.0 3.5 1 1 1.7e-06 8e-05 14.0 3.5 314 389 10 90 1 92 0.52 # 2655 # 2933 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.301 1_22 - 1695 AAA_13 PF13166.1 712 0.032 5.5 21.5 1 2 0.00053 0.026 5.8 15.9 282 459 75 262 20 274 0.43 # 16443 # 21527 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.391 1_22 - 1695 AAA_13 PF13166.1 712 0.032 5.5 21.5 2 2 0.055 2.7 -0.9 0.3 330 453 513 635 483 651 0.52 # 16443 # 21527 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.391 1_76 - 154 AAA_14 PF13173.1 128 6.5e-05 15.7 0.4 1 1 7.2e-06 0.00023 13.9 0.4 2 27 18 42 17 151 0.83 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_59 - 345 AAA_14 PF13173.1 128 0.00033 13.4 1.5 1 1 1.4e-05 0.00047 13.0 0.2 6 91 23 116 19 137 0.65 # 46442 # 47476 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_85 - 183 AAA_14 PF13173.1 128 0.00055 12.7 0.0 1 1 2.9e-05 0.00094 12.0 0.0 4 37 2 33 1 75 0.74 # 71621 # 72169 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.375 1_92 - 196 TK PF00265.13 176 2.3e-21 69.0 0.0 1 1 2.8e-23 2.7e-21 68.7 0.0 2 176 2 188 1 188 0.80 # 76119 # 76706 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.316 1_85 - 183 AAA_33 PF13671.1 143 7.3e-05 15.5 0.1 1 1 5.9e-06 0.00028 13.6 0.1 3 39 4 40 2 158 0.75 # 71621 # 72169 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.375 1_76 - 154 AAA_33 PF13671.1 143 0.00015 14.5 0.0 1 2 0.0013 0.064 6.0 0.0 2 28 21 47 20 51 0.83 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_76 - 154 AAA_33 PF13671.1 143 0.00015 14.5 0.0 2 2 0.00061 0.03 7.1 0.0 76 118 50 105 40 113 0.74 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_67 - 531 DnaB_C PF03796.10 259 1.1e-15 50.0 0.0 1 1 1.7e-17 1.7e-15 49.4 0.0 18 215 226 442 217 493 0.77 # 54609 # 56201 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.355 1_85 - 183 FtsK_SpoIIIE PF01580.13 205 0.0003 13.1 0.1 1 1 6.2e-06 0.00061 12.1 0.1 43 61 5 23 3 28 0.88 # 71621 # 72169 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.375 1_85 - 183 TIGR03263 TIGR03263 180 3.4e-22 71.5 0.0 1 1 4.1e-24 3.9e-22 71.3 0.0 3 179 2 178 1 179 0.83 # 71621 # 72169 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.375 1_92 - 196 Zot PF05707.7 193 0.00061 12.1 0.0 1 1 8.2e-06 0.0008 11.8 0.0 2 88 3 88 2 115 0.66 # 76119 # 76706 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.316 1_22 - 1695 DUF3584 PF12128.3 1201 0.0021 8.2 26.5 1 3 7e-05 0.0068 6.5 11.5 606 752 34 184 12 194 0.78 # 16443 # 21527 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.391 1_22 - 1695 DUF3584 PF12128.3 1201 0.0021 8.2 26.5 2 3 8.8e-06 0.00085 9.5 4.5 466 531 189 254 177 258 0.89 # 16443 # 21527 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.391 1_22 - 1695 DUF3584 PF12128.3 1201 0.0021 8.2 26.5 3 3 0.022 2.1 -1.7 0.1 824 893 552 621 498 645 0.71 # 16443 # 21527 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.391 1_46 - 345 PrmA PF06325.8 295 0.0014 10.6 1.7 1 2 0.028 2.7 -0.2 0.2 32 89 28 84 15 102 0.67 # 38817 # 39851 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_46 - 345 PrmA PF06325.8 295 0.0014 10.6 1.7 2 2 2.9e-05 0.0028 9.6 0.6 38 108 98 175 71 183 0.67 # 38817 # 39851 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.329 1_76 - 154 CPT PF07931.7 174 2.8e-08 26.4 0.1 1 2 4.7e-08 4.5e-06 19.2 0.1 2 36 19 51 18 114 0.85 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_76 - 154 CPT PF07931.7 174 2.8e-08 26.4 0.1 2 2 0.00064 0.062 5.8 0.0 103 170 78 148 66 151 0.63 # 63482 # 63943 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.374 1_85 - 183 Guanylate_kin PF00625.16 183 8.5e-16 50.8 0.0 1 1 1.1e-17 1e-15 50.5 0.0 4 180 2 177 1 180 0.83 # 71621 # 72169 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.375 1_7 - 93 TIGR00344 TIGR00344 847 0.00024 11.9 3.8 1 1 2.5e-06 0.00025 11.9 3.8 709 798 4 89 1 92 0.76 # 2655 # 2933 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.301 1_59 - 345 AAA_24 PF13479.1 213 3.8e-23 75.0 5.8 1 1 3.9e-23 3.8e-21 68.5 5.1 5 198 21 237 18 275 0.77 # 46442 # 47476 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_85 - 183 AAA_28 PF13521.1 163 3.7e-06 19.9 0.1 1 1 6.5e-08 6.3e-06 19.1 0.1 2 32 3 33 2 40 0.90 # 71621 # 72169 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.375 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/77ceeeae-84b8-4ac6-b19b-f6090da3de65 # Target file: checkm_output/bins/pGCA_000877815.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000877815.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/77ceeeae-84b8-4ac6-b19b-f6090da3de65 checkm_output/bins/pGCA_000877815.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:07 2020 # [ok]