# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 214 MipZ PF09140.6 261 6.8e-20 63.3 0.2 1 1 2.6e-20 1.5e-18 58.9 0.2 2 139 2 120 1 137 0.87 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 YhjQ PF06564.7 244 2.6e-07 22.3 0.2 1 2 2.1e-06 0.00012 13.6 0.1 4 40 3 39 1 44 0.88 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 YhjQ PF06564.7 244 2.6e-07 22.3 0.2 2 2 0.00022 0.013 7.0 0.0 99 152 63 114 47 138 0.77 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 ATP_bind_1 PF03029.12 238 0.00034 12.3 1.4 1 1 8.8e-05 0.005 8.5 0.2 6 39 11 44 5 93 0.75 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 SRP54 PF00448.17 196 6.8e-12 37.3 0.5 1 1 2e-13 1.1e-11 36.6 0.1 4 100 2 96 1 107 0.78 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 AAA_17 PF13207.1 121 4.9e-06 19.5 0.0 1 1 1.3e-07 7.1e-06 19.0 0.0 8 78 10 104 2 208 0.70 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 MobB PF03205.9 140 2.8e-05 16.0 0.7 1 2 1.4e-06 8e-05 14.5 0.6 3 46 3 45 1 103 0.76 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 MobB PF03205.9 140 2.8e-05 16.0 0.7 2 2 0.069 3.9 -0.7 0.0 44 63 85 107 59 162 0.65 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 ArsA_ATPase PF02374.10 305 2.4e-08 25.4 4.2 1 3 2.3e-09 1.3e-07 23.0 0.4 3 39 2 39 1 59 0.88 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 ArsA_ATPase PF02374.10 305 2.4e-08 25.4 4.2 2 3 0.0069 0.39 1.7 0.0 116 135 67 88 52 90 0.72 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 ArsA_ATPase PF02374.10 305 2.4e-08 25.4 4.2 3 3 0.021 1.2 0.2 0.0 186 233 117 163 104 173 0.69 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 Zeta_toxin PF06414.7 201 0.00012 13.3 1.6 1 2 2.9e-06 0.00017 12.8 0.2 19 52 3 39 1 96 0.84 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 Zeta_toxin PF06414.7 201 0.00012 13.3 1.6 2 2 0.051 2.9 -1.0 0.1 69 69 177 177 117 210 0.56 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 VirC1 PF07015.6 231 1.2e-12 39.5 0.0 1 1 2.3e-14 1.3e-12 39.4 0.0 8 173 7 168 1 209 0.84 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 Fer4_NifH PF00142.13 273 8.9e-06 17.1 0.7 1 2 4.8e-07 2.7e-05 15.5 0.2 8 45 9 46 3 58 0.90 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 Fer4_NifH PF00142.13 273 8.9e-06 17.1 0.7 2 2 0.049 2.8 -0.9 0.0 158 173 65 80 57 140 0.66 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 AAA_23 PF13476.1 202 4.2e-05 16.0 2.0 1 2 0.0068 0.39 3.1 1.5 29 39 11 21 1 30 0.79 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 AAA_23 PF13476.1 202 4.2e-05 16.0 2.0 2 2 1.7e-05 0.00098 11.6 0.0 94 185 39 162 25 211 0.62 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 AAA_18 PF13238.1 129 2.7e-05 16.6 1.1 1 2 2.9e-06 0.00016 14.1 0.1 8 79 11 86 2 104 0.64 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 AAA_18 PF13238.1 129 2.7e-05 16.6 1.1 2 2 0.038 2.2 0.8 0.1 56 56 168 168 127 212 0.48 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 CbiA PF01656.18 195 1.3e-26 85.3 0.0 1 1 2.7e-28 1.6e-26 85.0 0.0 3 171 5 155 3 186 0.74 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 AAA_31 PF13614.1 157 1.6e-10 33.2 0.1 1 2 4.4e-07 2.5e-05 16.4 0.0 3 43 3 43 1 60 0.89 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 AAA_31 PF13614.1 157 1.6e-10 33.2 0.1 2 2 1.5e-06 8.6e-05 14.6 0.0 105 153 67 114 61 118 0.82 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 KTI12 PF08433.5 270 3.3e-05 15.3 0.0 1 1 9.2e-07 5.3e-05 14.6 0.0 11 77 11 86 1 89 0.70 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 ApbA PF02558.11 151 0.00026 12.6 0.0 1 1 7.8e-06 0.00045 11.8 0.0 9 73 17 85 11 96 0.73 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 4_2 - 387 KH_4 PF13083.1 73 0.00021 13.1 1.9 1 2 0.072 4.1 -0.7 0.0 27 46 104 126 84 132 0.64 # 1151 # 2311 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.230 4_2 - 387 KH_4 PF13083.1 73 0.00021 13.1 1.9 2 2 2.3e-05 0.0013 10.5 0.1 2 47 279 326 278 329 0.83 # 1151 # 2311 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.230 1_3 - 214 AAA_19 PF13245.1 76 0.00059 11.8 0.0 1 1 5.1e-05 0.0029 9.5 0.0 20 48 11 35 3 53 0.82 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 AAA_10 PF12846.2 304 0.00017 13.2 0.0 1 1 6.6e-06 0.00037 12.0 0.0 11 48 11 55 3 90 0.84 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 adh_short_C2 PF13561.1 241 0.00037 12.4 0.1 1 1 9.9e-06 0.00056 11.8 0.1 2 54 11 90 10 159 0.62 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 DUF2075 PF09848.4 352 2.1e-05 15.7 0.0 1 1 4.4e-07 2.5e-05 15.4 0.0 4 94 3 90 1 135 0.76 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 APS_kinase PF01583.15 157 6.4e-05 14.8 0.1 1 2 5.9e-06 0.00034 12.4 0.1 7 40 5 39 1 55 0.85 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 1_3 - 214 APS_kinase PF01583.15 157 6.4e-05 14.8 0.1 2 2 0.04 2.3 -0.0 0.0 55 96 117 161 112 188 0.65 # 899 # 1540 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.318 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c16cfd52-7776-4c22-9353-9ff4c76bf867 # Target file: checkm_output/bins/pGCA_000834965.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_000834965.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c16cfd52-7776-4c22-9353-9ff4c76bf867 checkm_output/bins/pGCA_000834965.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:43:02 2020 # [ok]